Mycobacterium tuberculosis (CIP 104256, ATCC 19422, CCUG 21046)

Name: Mycobacterium tuberculosis (CIP 104256, ATCC 19422, CCUG 21046)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 135717

Type strain

Culture col. no. CIP 104256 ATCC 19422 CCUG 21046 NCTC 8710

NCBI tax ID(s) 1773

Special Collections CCUG CIP

Links

Mycobacterium tuberculosis CIP 104256 is a bacterium of the family Mycobacteriaceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 36982

ATCC 19422,NCTC 8710,DSM 44155,CCUG 21046,CIP 104256,CNCTC 7280

@ref 20215

Last LPSN update 2026-05-29 08:38:37

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium tuberculosis

Full scientific name Mycobacterium tuberculosis (Zopf 1883) Lehmann and Neumann 1896 (Approved Lists 1980)

Synonyms (8)

Mycobacterium africanum
Mycobacterium bovis subsp. caprae
"Bacterium tuberculosis"
Mycobacterium pinnipedii
Mycobacterium caprae
Mycobacterium microti
Mycobacterium tuberculosis subsp. caprae
Mycobacterium bovis

BacDive ID	Other strains from **Mycobacterium tuberculosis** (78)	Type strain
170314	M. tuberculosis H37Rv, ATCC 27294, NCTC 13144, NCTC 13114, ... (type strain)
8542	M. tuberculosis BCGT, tice, DSM 43990, ATCC 27289
8543	M. tuberculosis S4-Jena, BCG S4, DSM 45071
174194	M. tuberculosis H37Rv, CIP 104475, ATCC 25618
174195	M. tuberculosis 140010142, CRBIP7.10, CIPT 10
174196	M. tuberculosis 140010143, CRBIP7.105, CIPT 105
174197	M. tuberculosis a10924*14, 140010128, CRBIP7.11
174198	M. tuberculosis 44848, 140010127, CRBIP7.12
174199	M. tuberculosis 64-15489, 140010044, CRBIP7.122, CIPT 122
174200	M. tuberculosis 140010045, 65/15398, CRBIP7.123, CIPT 123
174201	M. tuberculosis 140010046, CRBIP7.124, CIPT 124
174202	M. tuberculosis 140010047, CRBIP7.125, CIPT 125
174203	M. tuberculosis e32, 140010048, CRBIP7.126, CIPT 126
174204	M. tuberculosis 140010049, CRBIP7.127, CIPT 127
174205	M. tuberculosis 140010050, CRBIP7.128, CIPT 128
174206	M. tuberculosis 140010051, 770893, CRBIP7.129, CIPT 129
174207	M. tuberculosis 140010134, CRBIP7.13, CIPT 13
174208	M. tuberculosis 140010064, CRBIP7.130, CIPT 130
174209	M. tuberculosis 140010075, 860497, CRBIP7.131, CIPT 131
174210	M. tuberculosis 860174, 140010077, CRBIP7.132, CIPT 132
174211	M. tuberculosis 140010144, CRBIP7.14, CIPT 14
174212	M. tuberculosis 2357.0276, 140010123, CRBIP7.15, CIPT 15
174213	M. tuberculosis 860173, 140010076, CRBIP7.174, CIPT 174
174214	M. tuberculosis 140010145, 005245286, CRBIP7.26, CIPT 26
174215	M. tuberculosis 140010135, 054977, CRBIP7.27, CIPT 27
174216	M. tuberculosis 140010140, CRBIP7.28, CIPT 28
174217	M. tuberculosis 140010129, CRBIP7.3, CIPT 3
174218	M. tuberculosis 20020435, A20426-984073, CRBIP7.4, CIPT 4
174219	M. tuberculosis 140010135, CRBIP7.53, CIPT 53
174220	M. tuberculosis 140010141, k4828/02, CRBIP7.54, CIPT 54
174221	M. tuberculosis 36003005., 140010136, CRBIP7.55, CIPT 55
174222	M. tuberculosis 140010137, CRBIP7.6, CIPT 6
174223	M. tuberculosis CR027007, 140010132, CRBIP7.7, CIPT 7
174224	M. tuberculosis 140010124, CRBIP7.77, CIPT 77
174225	M. tuberculosis Behring, CRBIP7.78, CIPT 78
174226	M. tuberculosis LA, CRBIP7.79, CIPT 79
174227	M. tuberculosis 140010133, CRBIP7.8, CIPT 8
174228	M. tuberculosis 140010146, CRBIP7.9, CIPT 9
174229	M. tuberculosis MYC 4500, CIP 111339
174230	M. tuberculosis MYC 4504, CIP 111343
174231	M. tuberculosis 1454, MYC 5125, CIP 111354
174232	M. tuberculosis 1549, MYC 5172, CIP 111356
174233	M. tuberculosis MYC 5180, 1562, CIP 111357
174234	M. tuberculosis MYC 5181, 1566, CIP 111358
174235	M. tuberculosis 5199, 1574, CIP 111361
174236	M. tuberculosis 1569, MYC 5194, CIP 111359
174237	M. tuberculosis 1573, 5198, CIP 111360
174238	M. tuberculosis 1505, MYC 5650, CIP 111365
174239	M. tuberculosis MYC 5214, 1589, CIP 111367
174240	M. tuberculosis 1628, MYC 5249, CIP 111368
174241	M. tuberculosis 1702, MYC 5311, CIP 111369
174242	M. tuberculosis 1704, MYC 5312, CIP 111370
174243	M. tuberculosis 1751, MYC 5337, CIP 111371
174244	M. tuberculosis 1769, MYC 5343, CIP 111372
174245	M. tuberculosis 1918, MYC 5438, CIP 111373
174246	M. tuberculosis MYC 5645, 2188, CIP 111375
174247	M. tuberculosis 2189, MYC 5646, CIP 111376
174248	M. tuberculosis 2203, MYC 5665, CIP 111377
174249	M. tuberculosis MYC 5691, 2218, CIP 111379
174250	M. tuberculosis MYC 5815, 2336, CIP 111380
174251	M. tuberculosis MYC 5243, 1621, CIP 111382
174252	M. tuberculosis 1610, MYC 5652, CIP 111389
174253	M. tuberculosis 2197, MYC 5660, CIP 111390
174254	M. tuberculosis 2254, MYC 5727, CIP 111394
174255	M. tuberculosis MYC 5761, 2281, CIP 111396
174256	M. tuberculosis 2303, MYC 5783, CIP 111397
174257	M. tuberculosis MYC 5236, 101, CIP 111413
174258	M. tuberculosis MYC 5599, 1864, CIP 111419
174259	M. tuberculosis MYC 5601, 1954, CIP 111420
174260	M. tuberculosis 2049, MYC 5604, CIP 111422
174261	M. tuberculosis MYC 5622, 1967, CIP 111425
174262	M. tuberculosis 2180, MYC 5635, CIP 111426
174263	M. tuberculosis 1548, MYC 5651, CIP 111427
174264	M. tuberculosis 2234, MYC 5707, CIP 111430
174265	M. tuberculosis 2344, MYC 5823, CIP 111433
174266	M. tuberculosis MYC 5923, 2437, CIP 111438
174267	M. tuberculosis 2451, MYC 5935, CIP 111440
174268	M. tuberculosis MYC 5999, 2512, CIP 111443

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		91
125438		90.681	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth
34898	MEDIUM 55 - for Mycobacterium

Culture temp

@ref	Growth	Type	Temperature (°C)
34898	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.756

Isolation, sampling and environmental information

Isolation

@ref	Geographic location	Country	Country ISO 3 Code	Continent
34898	Oxford	United Kingdom	GBR	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM298221v1 assembly for Mycobacterium tuberculosis variant microti ATCC 19422	scaffold	GCA_002982215	1806.15	8117334603	1806	24.81

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Mycobacterium microti 16S ribosomal RNA gene, partial sequence.	AF480584	1484		1806
124043	Mycobacterium microti strain CIP 104256 16S ribosomal RNA gene, partial sequence.	AF547947	556		1806

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM298221v1 assembly for Mycobacterium tuberculosis variant microti ATCC 19422
BV-BRC: 1806.15

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.76	no
125439	gram_stain	BacteriaNetⓘ	positive	84.27	no
125439	motility	BacteriaNetⓘ	no	84.08	no
125439	spore_formation	BacteriaNetⓘ	no	76.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycobacterium tuberculosis variant microti ATCC 19422
NCBI: GCA_002982215.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.68	no
125438	anaerobic	anaerobicⓘ	no	97.60	no
125438	aerobic	aerobicⓘ	yes	75.57	no
125438	spore-forming	spore-formingⓘ	no	64.18	no
125438	thermophilic	thermophileⓘ	no	95.35	yes
125438	flagellated	motile2+ⓘ	no	91.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Development of a multiplex loop-mediated isothermal amplification (LAMP) method for differential detection of Mycobacterium bovis and Mycobacterium tuberculosis by dipstick DNA chromatography.	Akapelwa ML, Kapalamula TF, Moonga LC, Bwalya P, Solo ES, Chizimu JY, Thapa J, Hayashida K, Hang'ombe BM, Munyeme M, Tamaru A, Wada T, Yoshida S, Kodera T, Kawase M, Gordon SV, Yamada K, Nakajima C, Suzuki Y.	Microbiol Spectr	10.1128/spectrum.02421-24	2025
	Development and preliminary evaluation toward a new tuberculosis treatment monitoring tool: the PATHFAST TB LAM Ag assay.	Akinaga A, Takahashi M, Yamazaki T, Chikamatsu K, Matsushita S, Hashimoto Y, Iyoda T, Saika T, Mitarai S.	J Clin Microbiol	10.1128/jcm.00629-24	2024
Genetics	Genomic comparison between Mycobacterium bovis and Mycobacterium microti and in silico analysis of peptide-based biomarkers for serodiagnosis.	Moens C, Bogaerts B, Lorente-Leal V, Vanneste K, De Keersmaecker SCJ, Roosens NHC, Mostin L, Fretin D, Marche S.	Front Vet Sci	10.3389/fvets.2024.1446930	2024
	Rapid and Visual Differentiation of Mycobacterium tuberculosis From the Mycobacterium tuberculosis Complex Using Multiplex Loop-Mediated Isothermal Amplification Coupled With a Nanoparticle-Based Lateral Flow Biosensor.	Yang X, Huang J, Chen X, Xiao Z, Wang X, Chen Y, Zheng W, Chen W, Chen H, Lei S, Hu Y, Li S.	Front Microbiol	10.3389/fmicb.2021.708658	2021
Enzymology	Development of a new High Resolution Melting (HRM) assay for identification and differentiation of Mycobacterium tuberculosis complex samples.	Landolt P, Stephan R, Scherrer S.	Sci Rep	10.1038/s41598-018-38243-6	2019
Phylogeny	Three-reaction high-resolution melting assay for rapid differentiation of Mycobacterium tuberculosis complex members.	Landolt P, Stephan R, Stevens MJA, Scherrer S.	Microbiologyopen	10.1002/mbo3.919	2019
	Nosiheptide Harbors Potent In Vitro and Intracellular Inhbitory Activities against Mycobacterium tuberculosis.	Yu X, Zhu R, Geng Z, Kong Y, Wang F, Dong L, Zhao L, Xue Y, Ma X, Huang H.	Microbiol Spectr	10.1128/spectrum.01444-22	2022
	Description, validation, and review of a decade of experience with a laboratory-developed PCR test for detection of Mycobacterium tuberculosis complex in pulmonary and extrapulmonary specimens.	Buckwalter SP, Connelly BJ, Louison LK, Kolesch JM, Herring SA, Woodliff ED, Bolster LaSalle CM, Grys TE, Deml SM, Wohlfiel SL, Steinmetz LK, Wengenack NL.	J Clin Tuberc Other Mycobact Dis	10.1016/j.jctube.2022.100340	2022
Phylogeny	Pathogenomic analyses of Mycobacterium microti, an ESX-1-deleted member of the Mycobacterium tuberculosis complex causing disease in various hosts.	Orgeur M, Frigui W, Pawlik A, Clark S, Williams A, Ates LS, Ma L, Bouchier C, Parkhill J, Brodin P, Brosch R.	Microb Genom	10.1099/mgen.0.000505	2021
	Carbonyl Cyanide 3-Chlorophenylhydrazone (CCCP) Exhibits Direct Antibacterial Activity Against Mycobacterium abscessus.	Chen S, Teng T, Zhang Z, Shang Y, Xiao H, Jiang G, Wang F, Jia J, Dong L, Zhao L, Chu N, Huang H.	Infect Drug Resist	10.2147/idr.s303113	2021
	Fundamental Cell Morphologies Examined With Cryo-TEM of the Species in the Novel Five Genera Robustly Correlate With New Classification in Family Mycobacteriaceae.	Yamada H, Chikamatsu K, Aono A, Murata K, Miyazaki N, Kayama Y, Bhatt A, Fujiwara N, Maeda S, Mitarai S.	Front Microbiol	10.3389/fmicb.2020.562395	2020
Enzymology	Development of a loop-mediated isothermal amplification (LAMP) method for specific detection of Mycobacterium bovis.	Kapalamula TF, Thapa J, Akapelwa ML, Hayashida K, Gordon SV, Hang' Ombe BM, Munyeme M, Solo ES, Bwalya P, Nyenje ME, Tamaru A, Suzuki Y, Nakajima C.	PLoS Negl Trop Dis	10.1371/journal.pntd.0008996	2021
	In Vitro Activity of the Sudapyridine (WX-081) against Non-Tuberculous Mycobacteria Isolated in Beijing, China.	Zhu R, Shang Y, Chen S, Xiao H, Ren R, Wang F, Xue Y, Li L, Li Y, Chu N, Huang H.	Microbiol Spectr	10.1128/spectrum.01372-22	2022
Phylogeny	Novel DNA chip based on a modified DigiTag2 assay for high-throughput species identification and genotyping of Mycobacterium tuberculosis complex isolates.	Srilohasin P, Chaiprasert A, Tokunaga K, Nao N, Prammananan T.	J Clin Microbiol	10.1128/jcm.00153-14	2014
Pathogenicity	Intrinsic macrolide resistance of the Mycobacterium tuberculosis complex is inducible.	Andini N, Nash KA.	Antimicrob Agents Chemother	10.1128/aac.00264-06	2006
Enzymology	Development of a One-Step Multiplex PCR Assay for Differential Detection of Major Mycobacterium Species.	Chae H, Han SJ, Kim SY, Ki CS, Huh HJ, Yong D, Koh WJ, Shin SJ.	J Clin Microbiol	10.1128/jcm.00549-17	2017
	Rapid PCR Detection of Mycoplasma hominis, Ureaplasma urealyticum, and Ureaplasma parvum.	Cunningham SA, Mandrekar JN, Rosenblatt JE, Patel R.	Int J Bacteriol	10.1155/2013/168742	2013
	Detection of rifampicin resistance in Mycobacterium tuberculosis by padlock probes and magnetic nanobead-based readout.	Engstrom A, Zardan Gomez de la Torre T, Stromme M, Nilsson M, Herthnek D.	PLoS One	10.1371/journal.pone.0062015	2013
Pathogenicity	In Vitro Activities of Bedaquiline and Delamanid against Nontuberculous Mycobacteria Isolated in Beijing, China.	Yu X, Gao X, Li C, Luo J, Wen S, Zhang T, Ma Y, Dong L, Wang F, Huang H.	Antimicrob Agents Chemother	10.1128/aac.00031-19	2019
Phylogeny	Identification of Mycobacterium species by comparative analysis of the dnaA gene.	Mukai T, Miyamoto Y, Yamazaki T, Makino M.	FEMS Microbiol Lett	10.1111/j.1574-6968.2005.00031.x	2006
	Naturally attenuated, orally administered Mycobacterium microti as a tuberculosis vaccine is better than subcutaneous Mycobacterium bovis BCG.	Manabe YC, Scott CP, Bishai WR.	Infect Immun	10.1128/iai.70.3.1566-1570.2002	2002
Pathogenicity	Intrinsic macrolide resistance in Mycobacterium smegmatis is conferred by a novel erm gene, erm(38).	Nash KA.	Antimicrob Agents Chemother	10.1128/aac.47.10.3053-3060.2003	2003
Phylogeny	Identification of mycobacteria by matrix-assisted laser desorption ionization-time-of-flight mass spectrometry.	Pignone M, Greth KM, Cooper J, Emerson D, Tang J.	J Clin Microbiol	10.1128/jcm.01959-05	2006
	Mycobacterial biomaterials and resources for researchers.	Hazbon MH, Rigouts L, Schito M, Ezewudo M, Kudo T, Itoh T, Ohkuma M, Kiss K, Wu L, Ma J, Hamada M, Strong M, Salfinger M, Daley CL, Nick JA, Lee JS, Rastogi N, Couvin D, Hurtado-Ortiz R, Bizet C, Suresh A, Rodwell T, Albertini A, Lacourciere KA, Deheer-Graham A, Alexander S, Russell JE, Bradford R, Riojas MA.	Pathog Dis	10.1093/femspd/fty042	2018
Pathogenicity	Molecular genetics of para-aminosalicylic acid resistance in clinical isolates and spontaneous mutants of Mycobacterium tuberculosis.	Mathys V, Wintjens R, Lefevre P, Bertout J, Singhal A, Kiass M, Kurepina N, Wang XM, Mathema B, Baulard A, Kreiswirth BN, Bifani P.	Antimicrob Agents Chemother	10.1128/aac.01197-08	2009
Pathogenicity	Molecular basis of intrinsic macrolide resistance in the Mycobacterium tuberculosis complex.	Buriankova K, Doucet-Populaire F, Dorson O, Gondran A, Ghnassia JC, Weiser J, Pernodet JL.	Antimicrob Agents Chemother	10.1128/aac.48.1.143-150.2004	2004
Phylogeny	PCR-based method to differentiate the subspecies of the Mycobacterium tuberculosis complex on the basis of genomic deletions.	Huard RC, Lazzarini LC, Butler WR, van Soolingen D, Ho JL.	J Clin Microbiol	10.1128/jcm.41.4.1637-1650.2003	2003
Phylogeny	Diagnosis of Mycobacterium microti infections among humans by using novel genetic markers.	van Soolingen D, van der Zanden AG, de Haas PE, Noordhoek GT, Kiers A, Foudraine NA, Portaels F, Kolk AH, Kremer K, van Embden JD.	J Clin Microbiol	10.1128/jcm.36.7.1840-1845.1998	1998
Phylogeny	Distribution of environmental mycobacteria in Karonga District, northern Malawi.	Chilima BZ, Clark IM, Floyd S, Fine PE, Hirsch PR.	Appl Environ Microbiol	10.1128/aem.72.4.2343-2350.2006	2006
Enzymology	Mycobacterium microti tuberculosis in its maintenance host, the field vole (Microtus agrestis): characterization of the disease and possible routes of transmission.	Kipar A, Burthe SJ, Hetzel U, Rokia MA, Telfer S, Lambin X, Birtles RJ, Begon M, Bennett M, Bennett M.	Vet Pathol	10.1177/0300985813513040	2014
	Identification of a new DNA region specific for members of Mycobacterium tuberculosis complex.	Magdalena J, Vachee A, Supply P, Locht C.	J Clin Microbiol	10.1128/jcm.36.4.937-943.1998	1998
	Comparison of PCR-generated fragments of the mce gene from Mycobacterium tuberculosis, M. avium, M. intracellulare, and M. scrofulaceum.	Parker SL, Tsai YL, Palmer CJ.	Clin Diagn Lab Immunol	10.1128/cdli.2.6.770-775.1995	1995
Enzymology	Characterization of a DNA probe for detection of Mycobacterium tuberculosis complex in clinical samples by polymerase chain reaction.	Altamirano M, Kelly MT, Wong A, Bessuille ET, Black WA, Smith JA.	J Clin Microbiol	10.1128/jcm.30.8.2173-2176.1992	1992
Phylogeny	Differentiation of mycobacterial species by PCR-restriction analysis of DNA (342 base pairs) of the RNA polymerase gene (rpoB).	Kim BJ, Lee KH, Park BN, Kim SJ, Bai GH, Kim SJ, Kook YH.	J Clin Microbiol	10.1128/jcm.39.6.2102-2109.2001	2001
Phylogeny	Detection of Mycobacterium tuberculosis directly from spiked human sputum by Q-beta replicase-amplified assay.	Shah JS, Liu J, Buxton D, Stone B, Nietupski R, Olive DM, King W, Klinger JD.	J Clin Microbiol	10.1128/jcm.33.2.322-328.1995	1995
Enzymology	MTC28, a novel 28-kilodalton proline-rich secreted antigen specific for the Mycobacterium tuberculosis complex.	Manca C, Lyashchenko K, Colangeli R, Gennaro ML.	Infect Immun	10.1128/iai.65.12.4951-4957.1997	1997
Enzymology	Detection of Mycobacterium tuberculosis in clinical specimens by polymerase chain reaction and Gen-Probe Amplified Mycobacterium Tuberculosis Direct Test.	Abe C, Hirano K, Wada M, Kazumi Y, Takahashi M, Fukasawa Y, Yoshimura T, Miyagi C, Goto S.	J Clin Microbiol	10.1128/jcm.31.12.3270-3274.1993	1993
Phylogeny	Bacterial artificial chromosome-based comparative genomic analysis identifies Mycobacterium microti as a natural ESAT-6 deletion mutant.	Brodin P, Eiglmeier K, Marmiesse M, Billault A, Garnier T, Niemann S, Cole ST, Brosch R.	Infect Immun	10.1128/iai.70.10.5568-5578.2002	2002
Enzymology	PCR identification of Mycobacterium bovis BCG.	Talbot EA, Williams DL, Frothingham R.	J Clin Microbiol	10.1128/jcm.35.3.566-569.1997	1997
Enzymology	Performance of an automated Q-beta replicase amplification assay for Mycobacterium tuberculosis in a clinical trial.	Smith JH, Radcliffe G, Rigby S, Mahan D, Lane DJ, Klinger JD.	J Clin Microbiol	10.1128/jcm.35.6.1484-1491.1997	1997
Enzymology	Use of PCR and reverse line blot hybridization macroarray based on 16S-23S rRNA gene internal transcribed spacer sequences for rapid identification of 34 mycobacterium species.	Xiong L, Kong F, Yang Y, Cheng J, Gilbert GL.	J Clin Microbiol	10.1128/jcm.00633-06	2006
	Insertion element IS987 from Mycobacterium bovis BCG is located in a hot-spot integration region for insertion elements in Mycobacterium tuberculosis complex strains.	Hermans PW, van Soolingen D, Bik EM, de Haas PE, Dale JW, van Embden JD.	Infect Immun	10.1128/iai.59.8.2695-2705.1991	1991
Pathogenicity	Restriction of the main lineages of Mycobacterium africanum to West Africa: Insights from host-pathogen interaction studies.	Afum T, Asare P, Osei-Wusu S, Yeboah-Manu D.	Tuberculosis (Edinb)	10.1016/j.tube.2025.102701	2025
	Performance of direct detection of Mycobacterium tuberculosis within Mycobacterium tuberculosis complex by routine MALDI-TOF for diagnosis using species-specific lipid fingerprint.	Cheong B, He C, Laurenson I, Claxton P, Kostrzewa M, Drobniewski F, Larrouy-Maumus G.	Microbiol Spectr	10.1128/spectrum.00356-25	2025
	Molecular epidemiology of tuberculosis in Western Burkina Faso: insights from a MIRU-VNTR study.	Nagalo YYAA, Kabore OD, Millogo A, Sourabie A, Zongo E, Ouattara CA, Sawadogo Y, Kabore J, Birba E, Poda A, Belem AMG, Hoffmann J, Carriere C, Godreuil S, Ouedraogo AS.	BMC Microbiol	10.1186/s12866-025-04430-5	2025
Genetics	Population-Level Frequency of Fluoroquinolone Resistance by Whole-Genome Sequencing Drug Predictions in Mycobacterium tuberculosis Complex Isolates in England From 2017 Through 2023.	Ferran E, Chan C, Sheikh N, Dedicoat M, Alexander E, Gibertoni-Cruz A, Brown J, Robinson E, Lipman M.	Clin Infect Dis	10.1093/cid/ciae560	2025
	Review canine tuberculosis - An emerging concern.	Barker EN, O'Halloran C, Gunn-Moore DA.	Vet J	10.1016/j.tvjl.2024.106111	2024
	Histopathologic and molecular diagnosis of gastrointestinal tuberculosis in an immunocompetent patient: case report.	Cherukuri S, Huang EB, Totten AH, Steinberg J, Ahmed S.	ASM Case Rep	10.1128/asmcr.00105-24	2025
Genetics	First report of tuberculosis in a cat from Italy caused by Mycobacterium africanum, lineage 6: genomic characterization and phylogenetic analysis.	Alba P, Caprioli A, Cocumelli C, Eleni C, Galietta V, Giacomi A, Sorbara L, Stravino F, Feltrin F, Amoruso R, Ianzano A, Ceccaroni F, Frega M, Carfora V, Franco A, Battisti A.	Front Microbiol	10.3389/fmicb.2025.1633110	2025
	Canine tuberculosis: A review of 18 new and 565 previously reported confirmed cases.	O'Halloran C, Barker EN, Hope JC, Gunn-Moore DA.	Vet J	10.1016/j.tvjl.2024.106089	2024
Genetics	Mycobacterium tuberculosis genomic surveillance in Mexico. Characterization of variants in drug resistance and efflux pump genes.	Alvarado-Pena N, Munoz Torrico M, Narvaez-Diaz L, Mejia-Ponce PM, Becerril Vargas E, Zuniga J, Muniz-Salazar R, Laniado-Laborin R, Licona-Cassani C, Soberon X, Silva-Herzog E.	Front Microbiol	10.3389/fmicb.2025.1666838	2025
Genetics	Whole-genome sequencing analysis to identify antimicrobial resistance regions and virulence factors in Mycobacterium tuberculosis isolates from the Amhara Region, Ethiopia.	Gessese AT, Kinde MZ, Eshetu T, Kerisew B.	Sci Rep	10.1038/s41598-025-01241-6	2025
	Experimental infection of goats with Mycobacterium microti induces subclinical pulmonary tuberculosis and mild responses to tuberculin skin tests.	Melgarejo C, Cobos A, Domingo M, Cantero G, Moll X, Sevilla IA, Garrido JM, Michelet L, Boschiroli ML, Vidal E, Perez de Val B.	Vet Microbiol	10.1016/j.vetmic.2024.110009	2024
	Preliminary performance of the VIDAS TB-IGRA as an aid in the diagnosis of individuals infected with Mycobacterium tuberculosis.	Serge Diagbouga P, Djibougou AD, Pease C, Alcaide A, Berthoux A, Bruiners N, Cirillo DM, Combary A, Falchero N, Handler D, Kabore A, Lardizabal A, Lopes A, Loubet M, Manivet P, Margain C, Meunier V, Mougari F, Onyuka A, Rivoiron S, Sagna T, Sanvert M, Sawadogo L, Simpore J, Cambau E, Gennaro ML.	J Clin Microbiol	10.1128/jcm.01641-24	2025
	The Recent Development in the Diagnosis of Mycobacterium tuberculosis.	Temur N, Eren EE, Celik I, Yildiz IE, Nisari M, Unal IS, Celik C, Ildiz N, Ocsoy I.	Smart Med	10.1002/smmd.70007	2025
	Case Report: Mycobacterial epidural pyogranulomatous steatitis in a cat.	Decrop F, Henriques T, Hermann A, Fina C, Alvarez P, Minguez J, Posporis C.	Front Vet Sci	10.3389/fvets.2025.1610313	2025
	Mycobacterium bovis: An unusual cause of aortic graft infection.	Colantonio MA, Pokharel S, Dionne C, Leibrock S.	Radiol Case Rep	10.1016/j.radcr.2024.09.107	2024
	Genetic diversities of Mycobacterium tuberculosis complex species in Western Kenya.	Chelimo CK, Angienda PO, Olwal CO, Nyamogoba H.	Access Microbiol	10.1099/acmi.0.000729.v3	2024
	Evidence of Mycobacterium bovis DNA in shared water sources at livestock-wildlife-human interfaces in KwaZulu-Natal, South Africa.	Matthews MC, Cooke DM, Kerr TJ, Loxton AG, Warren RM, Ghielmetti G, Streicher EM, Witte CS, Miller MA, Goosen WJ.	Front Vet Sci	10.3389/fvets.2025.1483162	2025
	Prevalence of Mycobacterium Bovis infection and associated risk factors among dairy farm cattle in Mekelle and Wukro towns, Northern Ethiopia.	Weldegebriel M, Hailu K, Seid K, Negash L, Weldu Y, Fantay H, Mekonnen B, Abebe N.	BMC Microbiol	10.1186/s12866-025-04267-y	2025
Genetics	Molecular typing of Mycobacterium tuberculosis: a review of current methods, databases, softwares, and analytical tools.	Couvin D, Allaguy AS, Ez-Zari A, Jagielski T, Rastogi N.	FEMS Microbiol Rev	10.1093/femsre/fuaf017	2025
	First detection of bovine tuberculosis by Ziehl-Neelsen staining and polymerase chain reaction at dairy farms in the Lekok Sub-District, Pasuruan Regency, and Surabaya region, Indonesia.	Desire IA, Luqman M, Puspitasari Y, Tyasningsih W, Wardhana DK, Meles DK, Dhamayanti Y, Permatasari DA, Witaningrum AM, Perwitasari ADS, Raharjo HM, Ayuti SR, Kurniawan SC, Kamaruzaman INA, Silaen OSM.	Vet World	10.14202/vetworld.2024.577-584	2024
Genetics	Global epidemiology of Mycobacterium tuberculosis lineage 4 insights from Ecuadorian genomic data.	Morey-Leon G, Mejia-Ponce PM, Fernandez-Cadena JC, Garcia-Moreira E, Andrade-Molina D, Licona-Cassani C, Fresia P, Berna L.	Sci Rep	10.1038/s41598-025-86079-8	2025
	High-throughput nanopore targeted sequencing for efficient drug resistance assay of Mycobacterium tuberculosis	Tang C, Wu L, Li M, Dai J, Shi Y, Wang Q, Xu F, Zheng L, Xiao X, Cai J, Zhang Y, Yang Y, Zheng X, Xiang G.	Front Microbiol		2024
	Mycobacterium bovis infected domestic cats in an officially bovine tuberculosis free country resulting in human infection.	Commandeur S, van der Most M, Koomen J, van Keulen L, Dinkla A, Luinenburg X, Escher M, Jacobs P, Keur I, Grinwis GCM, Weerts E, Broens EM, Anthony R, Agterveld MK, Rebel K, Huisman E, Heijne M, Koets A.	One Health	10.1016/j.onehlt.2025.101048	2025
	Spondylitis with epidural abscess and spinal tuberculoma as a major cause of myeloradiculopathy: a case report.	Buchori E, Sari PP.	Radiol Case Rep	10.1016/j.radcr.2022.10.073	2023
	Histological and immunohistochemical characterization of granulomas in alpacas (Vicugna pacos) naturally infected with tuberculosis.	Agullo-Ros I, Ruedas-Torres I, Hunter L, Bird A, Whitehead CE, Salguero FJ.	Front Vet Sci	10.3389/fvets.2025.1638459	2025
	Mycobacterium orygis and its unseen impact: re-evaluating zoonotic tuberculosis in animal and human populations.	Rani I, Kumar R, Singha H, Riyesh T, Vaid RK, Bhattacharya TK, Shanmugasundaram K.	Front Public Health	10.3389/fpubh.2025.1505967	2025
	A precision overview of genomic resistance screening in Ecuadorian isolates of Mycobacterium tuberculosis using web-based bioinformatics tools.	Morey-Leon G, Mejia-Ponce PM, Granda Pardo JC, Munoz-Mawyin K, Fernandez-Cadena JC, Garcia-Moreira E, Andrade-Molina D, Licona-Cassani C, Berna L.	PLoS One	10.1371/journal.pone.0294670	2023
	Single nucleotide variation catalog from clinical isolates mapped on tertiary and quaternary structures of ESX-1-related proteins reveals critical regions as putative Mtb therapeutic targets.	Tzfadia O, Gijsbers A, Vujkovic A, Snobre J, Vargas R, Dewaele K, Meehan CJ, Farhat M, Hakke S, Peters PJ, de Jong BC, Siroy A, Ravelli RBG.	Microbiol Spectr	10.1128/spectrum.03816-23	2024
Genetics	Molecular detection and characterization of the Mycobacterium tuberculosis complex subspecies responsible for bovine tuberculosis in Punjab, Pakistan.	Maqsood R, Duffy SC, Bin Rashid H, Gill SS, Jabeen C, Arshad N, Umbreen G, Behr MA, Kapur V, Chaudhry M.	Microbiol Spectr	10.1128/spectrum.02692-23	2024
	Mycobacteria that cause tuberculosis have retained ancestrally acquired genes for the biosynthesis of chemically diverse terpene nucleosides.	Mayfield JA, Raman S, Ramnarine AK, Mishra VK, Huang AD, Dudoit S, Buter J, Cheng TY, Young DC, Nair YM, Ouellet IG, Griebel BT, Ma S, Sherman DR, Mallet L, Rhee KY, Minnaard AJ, Branch Moody D.	PLoS Biol	10.1371/journal.pbio.3002813	2024
	Antibodies against the Mycobacterium tuberculosis complex and Brucella spp. in captive and free-living European bison (Bison bonasus) in Poland.	Didkowska A, Colino EF, Olech W, Gloddy H, Anusz K, Infantes-Lorenzo JA, Gortazar C.	Vet Med Sci	10.1002/vms3.1314	2024
Genetics	Diversification of gene content in the Mycobacterium tuberculosis complex is determined by phylogenetic and ecological signatures.	Silva-Pereira TT, Soler-Camargo NC, Guimaraes AMS.	Microbiol Spectr	10.1128/spectrum.02289-23	2024
	Tackling Drug-Resistant Tuberculosis: New Challenges from the Old Pathogen Mycobacterium tuberculosis.	Mancuso G, Midiri A, De Gaetano S, Ponzo E, Biondo C.	Microorganisms	10.3390/microorganisms11092277	2023
	Knowledge and Preventive Practices of Abattoir Workers toward Bovine Tuberculosis in Wolaita Zone, Southern Ethiopia.	Mathewos M, Atiso T, Fesseha H, Kebede IA.	Am J Trop Med Hyg	10.4269/ajtmh.23-0776	2024
	Mycobacterium marinum Infection and Interferon-Gamma Release Assays Cross-Reactivity: A Case Report.	Patel PM, Camps N, Rivera CI, Tuda C, VanOstran G.	Cureus	10.7759/cureus.21420	2022
	Revolutionizing chronic endometritis diagnosis: real-time polymerase chain reaction unveils microbial pathogens in Indian women with abnormal bleeding and reproductive challenges.	Nandagopal M, Rajan N R, Padhiar C, Abhaya M, Bansal U, Ghambir P.	AJOG Glob Rep	10.1016/j.xagr.2024.100377	2024
Genetics	Comparative genomics of drug-resistant strains of Mycobacterium tuberculosis in Ecuador.	Morey-Leon G, Andrade-Molina D, Fernandez-Cadena JC, Berna L.	BMC Genomics	10.1186/s12864-022-09042-1	2022
	Tuberculous spondylitis following intravesical Bacillus Calmette-Guérin therapy for bladder cancer surgically treated through the anterior approach.	Shimizu T, Kobayashi Y, Fujiyoshi K, Yato Y.	BMJ Case Rep	10.1136/bcr-2022-251075	2022
	Genetic diversity and drug resistance profiles of Mycobacterium tuberculosis complex isolates from patients with extrapulmonary tuberculosis in Ghana and their associated host immune responses.	Addo SO, Mensah GI, Mosi L, Abrahams AOD, Addo KK.	IJID Reg	10.1016/j.ijregi.2022.06.005	2022
	Molecular detection of Mycobacterium tuberculosis sensu stricto in the soil of Niger.	Harouna Hamidou Z, Mamadou S, Saad J.	New Microbes New Infect	10.1016/j.nmni.2021.100939	2021
Phylogeny	Whole genome sequencing-based identification of human tuberculosis caused by animal-lineage Mycobacterium orygis.	Islam MR, Sharma MK, KhunKhun R, Shandro C, Sekirov I, Tyrrell GJ, Soualhine H.	J Clin Microbiol	10.1128/jcm.00260-23	2023
Proteome	Proteome Profile Changes Induced by Heterologous Overexpression of Mycobacterium tuberculosis-Derived Antigens PstS-1 (Rv0934) and Ag85B (Rv1886c) in Mycobacterium microti.	Garcia-Ruiz V, Orduna P, Castillo-Rodal AI, Flores-Rodriguez TJ, Lopez-Vidal Y.	Biomolecules	10.3390/biom12121836	2022
Genetics	The rate and role of pseudogenes of the Mycobacterium tuberculosis complex.	Soler-Camargo NC, Silva-Pereira TT, Zimpel CK, Camacho MF, Zelanis A, Aono AH, Patane JS, Dos Santos AP, Guimaraes AMS.	Microb Genom	10.1099/mgen.0.000876	2022
	Diagnostic and Neurological Overview of Brain Tuberculomas: A Review of Literature.	Perez-Malagon CD, Barrera-Rodriguez R, Lopez-Gonzalez MA, Alva-Lopez LF.	Cureus	10.7759/cureus.20133	2021
	Tailoring selective triclosan azo-adducts: Design, synthesis, and anti-mycobacterial evaluation.	Shekhar, Alcaraz M, Seboletswe P, Manhas N, Kremer L, Singh P, Kumar V.	Heliyon	10.1016/j.heliyon.2023.e22182	2023
Phylogeny	Phylogenomic analysis of the species of the Mycobacterium tuberculosis complex demonstrates that Mycobacterium africanum, Mycobacterium bovis, Mycobacterium caprae, Mycobacterium microti and Mycobacterium pinnipedii are later heterotypic synonyms of Mycobacterium tuberculosis.	Riojas MA, McGough KJ, Rider-Riojas CJ, Rastogi N, Hazbon MH.	Int J Syst Evol Microbiol	10.1099/ijsem.0.002507	2018
Enzymology	Feline Ocular Mycobacteriosis: Clinical Presentation, Histopathological Features, and Outcome.	Stavinohova R, O'Halloran C, Newton JR, Oliver JAC, Scurrell E, Gunn-Moore DA.	Vet Pathol	10.1177/0300985819844819	2019
Genetics	Rapid Identification of Mycobacterium tuberculosis Complex Using Mass Spectrometry: A Proof of Concept.	Robinne S, Saad J, Morsli M, Hamidou ZH, Tazerart F, Drancourt M, Baron SA.	Front Microbiol	10.3389/fmicb.2022.753969	2022
	Bacterial Load Comparison of the Three Main Lineages of Mycobacterium tuberculosis Complex in West Africa.	Osei-Wusu S, Morgan P, Asare P, Adams G, Musah AB, Siam IM, Gillespie SH, Sabiiti W, Yeboah-Manu D.	Front Microbiol	10.3389/fmicb.2021.719531	2021
Enzymology	BCG Infection due to MPT64-Negative Strain: A Diagnostic Challenge.	Suresh P, Biswas L, Prasad V, Kumar A, Sivadas S, Khan S, Biswas R.	Am J Trop Med Hyg	10.4269/ajtmh.19-0853	2020
	Synthetic approaches to potent heterocyclic inhibitors of tuberculosis: A decade review.	Dasmahapatra U, Chanda K.	Front Pharmacol	10.3389/fphar.2022.1021216	2022
	Whole-genome comparative analysis at the lineage/sublineage level discloses relationships between Mycobacterium tuberculosis genotype and clinical phenotype.	Negrete-Paz AM, Vazquez-Marrufo G, Vazquez-Garciduenas MS.	PeerJ	10.7717/peerj.12128	2021
Genetics	Genetic Analysis of TB Susceptibility Variants in Ghana Reveals Candidate Protective Loci in SORBS2 and SCL11A1 Genes.	Asante-Poku A, Morgan P, Osei-Wusu S, Aboagye SY, Asare P, Otchere ID, Adadey SM, Mnika K, Esoh K, Mawuta KH, Arthur N, Forson A, Mazandu GK, Wonkam A, Yeboah-Manu D.	Front Genet	10.3389/fgene.2021.729737	2021
	Ancient and recent differences in the intrinsic susceptibility of Mycobacterium tuberculosis complex to pretomanid.	Bateson A, Ortiz Canseco J, McHugh TD, Witney AA, Feuerriegel S, Merker M, Kohl TA, Utpatel C, Niemann S, Andres S, Kranzer K, Maurer FP, Ghodousi A, Borroni E, Cirillo DM, Wijkander M, Toro JC, Groenheit R, Werngren J, Machado D, Viveiros M, Warren RM, Sirgel F, Dippenaar A, Koser CU, Sun E, Timm J.	J Antimicrob Chemother	10.1093/jac/dkac070	2022
Genetics	The impact of frequently neglected model violations on bacterial recombination rate estimation: a case study in Mycobacterium canettii and Mycobacterium tuberculosis.	Sabin S, Morales-Arce AY, Pfeifer SP, Jensen JD.	G3 (Bethesda)	10.1093/g3journal/jkac055	2022
	T-Cell Exhaustion in Mycobacterium tuberculosis and Nontuberculous Mycobacteria Infection: Pathophysiology and Therapeutic Perspectives.	Lombardi A, Villa S, Castelli V, Bandera A, Gori A.	Microorganisms	10.3390/microorganisms9122460	2021
	A comprehensive update to the Mycobacterium tuberculosis H37Rv reference genome.	Chitale P, Lemenze AD, Fogarty EC, Shah A, Grady C, Odom-Mabey AR, Johnson WE, Yang JH, Eren AM, Brosch R, Kumar P, Alland D.	Nat Commun	10.1038/s41467-022-34853-x	2022
	Mycobacterium microti Interferes with Bovine Tuberculosis Surveillance.	Michelet L, de Cruz K, Tambosco J, Henault S, Boschiroli ML.	Microorganisms	10.3390/microorganisms8121850	2020
	Mycobacterium microti Infection in Red Foxes in France.	Michelet L, Richomme C, Reveillaud E, De Cruz K, Moyen JL, Boschiroli ML.	Microorganisms	10.3390/microorganisms9061257	2021
	The tough process of unmasking the slow-growing mycobacterium: case report of Mycobacterium microti infection.	van de Weg CAM, de Steenwinkel JEM, Miedema JR, Bakker M, van Ingen J, Hoefsloot W.	Access Microbiol	10.1099/acmi.0.000074	2020
	Molecular Characterisation of Mycobacterium bovis Isolates from Cattle Slaughtered in Adamawa and Gombe States, North-Eastern Nigeria.	Damina SM, Barnes DA, Inuwa B, Ularamu GH, Bello M, Okaiyeto OS, Kudi AC, Thapa J, Nakajima C, Suzuki Y.	Curr Issues Mol Biol	10.3390/cimb45070382	2023
	Repeated bouts of pulmonary tuberculosis in a hunting cat: reinfection or recrudescence?	Albuquerque CS, Cerna P, Gunn-Moore DA.	JFMS Open Rep	10.1177/2055116921990292	2021
	Mycobacterium microti Infection in Wild Boar (Sus scrofa): Histopathology Analysis Suggests Containment of the Infection.	Pigoli C, Tranquillo V, Gibelli LR, Gaffuri A, Alborali GL, Pacciarini M, Zanoni M, Boniotti MB, Sironi G, Caniatti M, Grieco V.	Front Vet Sci	10.3389/fvets.2021.734919	2021
	Disseminated Mycobacterium avium infection in a cat on long-term ciclosporin therapy and potential latent infection of an in-contact cat.	Webster J, Marchesi F, Gunn-Moore D, Haining H, Ridyard AE.	JFMS Open Rep	10.1177/20551169221109442	2022
	The double-edged sword - prosthetic joint infection following BCG treatment for bladder cancer: a case report.	Nguyen MH, Giordani MM, Thompson GR.	BMC Infect Dis	10.1186/s12879-019-3951-1	2019
Genetics	Mycobacterium microti Infections in Free-Ranging Red Deer (Cervus elaphus).	Ghielmetti G, Kupca AM, Hanczaruk M, Friedel U, Weinberger H, Revilla-Fernandez S, Hofer E, Riehm JM, Stephan R, Glawischnig W.	Emerg Infect Dis	10.3201/eid2708.210634	2021
	Human-to-Cattle Mycobacterium tuberculosis Complex Transmission in the United States.	Lombard JE, Patton EA, Gibbons-Burgener SN, Klos RF, Tans-Kersten JL, Carlson BW, Keller SJ, Pritschet DJ, Rollo S, Dutcher TV, Young CA, Hench WC, Thacker TC, Perea C, Lehmkuhl AD, Robbe-Austerman S.	Front Vet Sci	10.3389/fvets.2021.691192	2021
	Antituberculosis Targeted Drug Delivery as a Potential Future Treatment Approach.	Mazlan MKN, Mohd Tazizi MHD, Ahmad R, Noh MAA, Bakhtiar A, Wahab HA, Mohd Gazzali A.	Antibiotics (Basel)	10.3390/antibiotics10080908	2021
	Molecular epidemiology of Mycobacterium tuberculosis complex in the Volta Region of Ghana.	Ameke S, Asare P, Aboagye SY, Otchere ID, Osei-Wusu S, Yeboah-Manu D, Asante-Poku A.	PLoS One	10.1371/journal.pone.0238898	2021
	Prevalence, Risk Factors, and Diagnostic Efficacy of Bovine Tuberculosis in Slaughtered Animals at the Chiang Mai Municipal Abattoir, Thailand.	Singhla T, Boonyayatra S.	Front Vet Sci	10.3389/fvets.2022.846423	2022
	Application of the gamma-interferon assay to determine the prevalence of bovine tuberculosis in slaughter livestock at abattoirs in Gauteng, South Africa.	Mareledwane VE, Adesiyun AA, Thompson PN, Hlokwe TM.	Vet Med Sci	10.1002/vms3.492	2022
Pathogenicity	Molecular Analysis of Mycobacterium tuberculosis Isolated in the North Central Zone of Nigeria.	Pokam BDT, Yeboah-Manu D, Lawson L, Guemdjom PW, Okonu R, Madukaji L, Yhiler NY, Asuquo AE.	J Epidemiol Glob Health	10.2991/jegh.k.191015.001	2019
	Novel methods included in SpolLineages tool for fast and precise prediction of Mycobacterium tuberculosis complex spoligotype families.	Couvin D, Segretier W, Stattner E, Rastogi N.	Database (Oxford)	10.1093/database/baaa108	2020
	Menstrual Blood versus Endometrial Biopsy in Detection of Genital Tuberculosis by Using Nested Polymerase Chain Reaction in an Endemic Region.	Chaubey L, Kumar D, Prakash V, Nath G.	J Hum Reprod Sci	10.4103/jhrs.jhrs_149_17	2019
Transcriptome	Lipid droplets and the transcriptome of Mycobacterium tuberculosis from direct sputa: a literature review.	Mekonnen D, Derbie A, Mihret A, Yimer SA, Tonjum T, Gelaw B, Nibret E, Munshae A, Waddell SJ, Aseffa A.	Lipids Health Dis	10.1186/s12944-021-01550-5	2021
	Multiplex Real-Time PCR-short_TUB Assay for Detection of the Mycobacterium tuberculosis Complex in Smear-Negative Clinical Samples with Low Mycobacterial Loads.	Alcaide F, Trastoy R, Moure R, Gonzalez-Bardanca M, Ambroa A, Lopez M, Bleriot I, Blasco L, Fernandez-Garcia L, Tato M, Bou G, Tomas M, Mycobacterial and GEMARA SEIMC/REIPI Bacterial Clinical Adaptation Study Group.	J Clin Microbiol	10.1128/jcm.00733-19	2019
	Therapeutic effectiveness of tuberculous aneurysm and risk factors for mortality: a systematic review.	Yi S, Sheng L, Li W.	Gen Thorac Cardiovasc Surg	10.1007/s11748-022-01811-9	2022
	Comparison of multiplex and ordinary PCR for diagnosis of paratuberculosis and tuberculosis in blood samples (buffy coat) of cattle and buffaloes.	Brahma D, Narang D, Chandra M, Singh ST.	Iran J Vet Res		2020
	Toward a Phage Cocktail for Tuberculosis: Susceptibility and Tuberculocidal Action of Mycobacteriophages against Diverse Mycobacterium tuberculosis Strains.	Guerrero-Bustamante CA, Dedrick RM, Garlena RA, Russell DA, Hatfull GF.	mBio	10.1128/mbio.00973-21	2021
	Characterization of G-Quadruplex Motifs in espB, espK, and cyp51 Genes of Mycobacterium tuberculosis as Potential Drug Targets.	Mishra SK, Shankar U, Jain N, Sikri K, Tyagi JS, Sharma TK, Mergny JL, Kumar A.	Mol Ther Nucleic Acids	10.1016/j.omtn.2019.04.022	2019
Enzymology	Spatiotemporal and Ecological Patterns of Mycobacterium microti Infection in Wild Boar (Sus scrofa).	Chiari M, Ferrari N, Giardiello D, Avisani D, Pacciarini ML, Alborali L, Zanoni M, Boniotti MB.	Transbound Emerg Dis	10.1111/tbed.12313	2016
	Application of antigenic biomarkers for Mycobacterium tuberculosis.	Rodriguez-Hernandez E, Quintas-Granados LI, Flores-Villalva S, Canto-Alarcon JG, Milian-Suazo F.	J Zhejiang Univ Sci B	10.1631/jzus.b2000325	2020
	Evaluation of adenosine deaminase activity in serum of cattle and buffaloes in the diagnosis of bovine tuberculosis.	Dhaliwal NK, Narang D, Chandra M, Filia G, Singh ST.	Vet World	10.14202/vetworld.2020.110-113	2020
	Multiple genetic paths including massive gene amplification allow Mycobacterium tuberculosis to overcome loss of ESX-3 secretion system substrates.	Wang L, Asare E, Shetty AC, Sanchez-Tumbaco F, Edwards MR, Saranathan R, Weinrick B, Xu J, Chen B, Benard A, Dougan G, Leung DW, Amarasinghe GK, Chan J, Basler CF, Jacobs WR, Tufariello JM.	Proc Natl Acad Sci U S A	10.1073/pnas.2112608119	2022
	The Relevance of Genomic Epidemiology for Control of Tuberculosis in West Africa.	Asare P, Asante-Poku A, Osei-Wusu S, Otchere ID, Yeboah-Manu D.	Front Public Health	10.3389/fpubh.2021.706651	2021
	Primary Liver Abscess with Anterior Abdominal Wall Extension Caused by Mycobacteriumtuberculosis Complex.	Pandya JS, Kandekar RV, Tiwari AR, Kadam R, Adhikari DR.	J Clin Diagn Res	10.7860/jcdr/2016/21845.8795	2016
	Study of Zoonotic Pathogens in Alien Population of Veiled Chameleons (Chamaeleo calyptratus) in the Canary Islands (Spain).	Pino-Vera R, Abreu-Acosta N, Foronda P.	Animals (Basel)	10.3390/ani13142288	2023
Genetics	Genome sequencing of Mycobacterium pinnipedii strains: genetic characterization and evidence of superinfection in a South American sea lion (Otaria flavescens).	Silva-Pereira TT, Ikuta CY, Zimpel CK, Camargo NCS, de Souza Filho AF, Ferreira Neto JS, Heinemann MB, Guimaraes AMS.	BMC Genomics	10.1186/s12864-019-6407-5	2019
	Experimental Mycobacterium microti Infection in Bank Voles (Myodes glareolus).	Vidal E, Burgaya J, Michelet L, Arrieta-Villegas C, Cantero G, de Cruz K, Tambosco J, Di Bari M, Nonno R, Boschiroli ML, Perez de Val B.	Microorganisms	10.3390/microorganisms10010135	2022
	Design, Synthesis and Antitubercular Evaluation of Novel Series of Pyrazinecarboxamide Metal Complexes.	Ali M, Ahmed M, Hafiz S, Kamal M, Mumtaz M, Ayatollahi SA.	Iran J Pharm Res		2018
Metabolism	Expanding the knowledge around antitubercular 5-(2-aminothiazol-4-yl)isoxazole-3-carboxamides: Hit-to-lead optimization and release of a novel antitubercular chemotype via scaffold derivatization.	Girardini M, Ferlenghi F, Annunziato G, Degiacomi G, Papotti B, Marchi C, Sammartino JC, Rasheed SS, Contini A, Pasca MR, Vacondio F, Evans JC, Dick T, Muller R, Costantino G, Pieroni M.	Eur J Med Chem	10.1016/j.ejmech.2022.114916	2023
Metabolism	Structural insights into substrate recognition by the type VII secretion system.	Wang S, Zhou K, Yang X, Zhang B, Zhao Y, Xiao Y, Yang X, Yang H, Guddat LW, Li J, Rao Z.	Protein Cell	10.1007/s13238-019-00671-z	2020
	Rodent-Related Zoonotic Pathogens at the Human-Animal-Environment Interface in Qatar: A Systematic Review and Meta-Analysis.	Islam MM, Farag E, Mahmoudi A, Hassan MM, Mostafavi E, Enan KA, Al-Romaihi H, Atta M, El Hussein ARM, Mkhize-Kwitshana Z.	Int J Environ Res Public Health	10.3390/ijerph18115928	2021
	An unexpected finding in a man with multiple pulmonary nodules, a pleural effusion and respiratory failure.	Pang YL, Jones Q.	Respir Med Case Rep	10.1016/j.rmcr.2017.03.003	2017
	Experimental Infection of Captive Red Foxes (Vulpes vulpes) with Mycobacterium bovis.	Richomme C, Lesellier S, Salguero FJ, Barrat JL, Boucher JM, Reyes-Reyes JD, Henault S, De Cruz K, Tambosco J, Michelet L, Boutet J, Elahi R, Lyashchenko KP, O'Halloran C, Balseiro A, Boschiroli ML.	Microorganisms	10.3390/microorganisms10020380	2022
	Pathology of Bovine Tuberculosis in Three Breeds of Dairy Cattle and Spoligotyping of the Causative Mycobacteria in Ethiopia.	Ambaw M, Gelalcha BD, Bayissa B, Worku A, Yohannis A, Zewude A, Ameni G.	Front Vet Sci	10.3389/fvets.2021.715598	2021
Genetics	Phylogenomics of Mycobacterium africanum reveals a new lineage and a complex evolutionary history.	Coscolla M, Gagneux S, Menardo F, Loiseau C, Ruiz-Rodriguez P, Borrell S, Otchere ID, Asante-Poku A, Asare P, Sanchez-Buso L, Gehre F, Sanoussi CN, Antonio M, Affolabi D, Fyfe J, Beckert P, Niemann S, Alabi AS, Grobusch MP, Kobbe R, Parkhill J, Beisel C, Fenner L, Bottger EC, Meehan CJ, Harris SR, de Jong BC, Yeboah-Manu D, Brites D.	Microb Genom	10.1099/mgen.0.000477	2021
	Tuberculosis prevalence in animals and humans in the Republic of Kazakhstan.	Turgenbayev KA, Borsynbayeva AM, Plazun AA, Turgenbayev RK.	Vet World	10.14202/vetworld.2021.2362-2370	2021
Enzymology	Evaluation of GeneXpert MTB/RIF for detection of Mycobacterium tuberculosis complex and rpo B gene in respiratory and non-respiratory clinical specimens at a tertiary care teaching hospital in Saudi Arabia.	Somily AM, Barry MA, Habib HA, Alotaibi FE, Al-Zamil FA, Khan MA, Sarwar MS, Bakhash ND, Alrabiaah AA, Shakoor ZA, Senok AC.	Saudi Med J	10.15537/smj.2016.12.15506	2016
	SITVITBovis-a publicly available database and mapping tool to get an improved overview of animal and human cases caused by Mycobacterium bovis.	Couvin D, Cervera-Marzal I, David A, Reynaud Y, Rastogi N.	Database (Oxford)	10.1093/database/baab081	2022
	Overcoming Mycobacterium tuberculosis through small molecule inhibitors to break down cell wall synthesis.	Kuang W, Zhang H, Wang X, Yang P.	Acta Pharm Sin B	10.1016/j.apsb.2022.04.014	2022
Phylogeny	Infection of African buffalo (Syncerus caffer) by oryx bacillus, a rare member of the antelope clade of the Mycobacterium tuberculosis complex.	Gey van Pittius NC, Perrett KD, Michel AL, Keet DF, Hlokwe T, Streicher EM, Warren RM, van Helden PD.	J Wildl Dis	10.7589/2010-07-178	2012
	Evaluation of immunogenicity and protective efficacy against Mycobacterium tuberculosis infection elicited by recombinant Mycobacterium bovis BCG expressing human Interleukin-12p70 and Early Secretory Antigen Target-6 fusion protein.	Deng Y, Bao L, Yang X.	Microbiol Immunol	10.1111/j.1348-0421.2011.00376.x	2011
	A Retrospective Study on Tuberculous Lymphadenitis: A Finding from Multicenter Referral Hospitals.	Mohiuddin SG, Sulaiman SAS, Albitar O, Iqbal MS, Obaidullah M, Ghadzi SMS, Khan AH, Mutallif AR.	J Pharm Bioallied Sci	10.4103/jpbs.jpbs_473_21	2022
	Insertion and deletion evolution reflects antibiotics selection pressure in a Mycobacterium tuberculosis outbreak.	Godfroid M, Dagan T, Merker M, Kohl TA, Diel R, Maurer FP, Niemann S, Kupczok A.	PLoS Pathog	10.1371/journal.ppat.1008357	2020
	Pulmonary tuberculosis presenting with oral aphthae.	Bayraktar K, Gurer G.	Eur J Rheumatol	10.5152/eurjrheum.2015.0098	2015
	Lymphadenopathy and granulomas: benignancy of malignancy and differential diagnosis with endobronchial ultrasound-transbronchial needle biopsy 19G needle fine-needle aspiration biopsy.	Zarogoulidis P, Hatzibougias D, Tsakiridis K, Matthaios D, Hohenforst-Schmidt W, Huang H, Bai C, Tryfon S, Saroglou M, Zaric B, Boujkovinas I, Karapantzou C.	Lung Cancer Manag	10.2217/lmt-2021-0002	2021
Phylogeny	Naming spoligotype patterns for the RD9-deleted lineage of the Mycobacterium tuberculosis complex; www.Mbovis.org.	Smith NH, Upton P.	Infect Genet Evol	10.1016/j.meegid.2011.08.002	2012
	Mycobacterium xenopi systemic infection in a domestic fiery-shouldered conure bird (Pyrrhura egregia).	St-Jean G, Gagnon CA, Soualhine H, Tremblay M, Beaulieu AA, Sylvestre D.	JMM Case Rep	10.1099/jmmcr.0.005158	2018
	Detection of Mycobacterium tuberculosis and Mycobacterium bovis in Sahiwal cattle from an organized farm using ante-mortem techniques.	Filia G, Leishangthem GD, Mahajan V, Singh A.	Vet World	10.14202/vetworld.2016.383-387	2016
	Ocular mycobacterial lesions in cats.	Mitchell JL, MacDougall L, Dobromylskyj MJ, Smith K, Stavinohova R, Gunn-Moore DA, Hope JC, Scurrell E.	Vet Pathol	10.1177/03009858221098431	2022
	Mycobacterium microti at the Environment and Wildlife Interface.	Tagliapietra V, Boniotti MB, Mangeli A, Karaman I, Alborali G, Chiari M, D'Incau M, Zanoni M, Rizzoli A, Pacciarini ML.	Microorganisms	10.3390/microorganisms9102084	2021
	Risk Factors and Mental Health Status in Patients With Non-Tuberculous Mycobacterial Lung Disease: A Single Center Retrospective Study.	Zhao Z, Hu H, Wang M, Li F, Tang H.	Front Public Health	10.3389/fpubh.2022.912651	2022
	Correlation of Conservation of Sequence and Structures of Mycobacterial Hemerythrin-like Proteins with Evolutionary Relationship and Host Pathogenicity.	Ma Z, Caldas Nogueira ML, Marchi-Salvador DP, Davidson VL.	ACS Omega	10.1021/acsomega.0c03338	2020
	Primary tuberculosis of palate.	Chen I, Jamal S, Pua KC.	Malays Fam Physician		2015
Pathogenicity	Evidence, Challenges, and Knowledge Gaps Regarding Latent Tuberculosis in Animals.	Ncube P, Bagheri B, Goosen WJ, Miller MA, Sampson SL.	Microorganisms	10.3390/microorganisms10091845	2022
Genetics	Large-Scale Genomics Reveals the Genetic Characteristics of Seven Species and Importance of Phylogenetic Distance for Estimating Pan-Genome Size.	Park SC, Lee K, Kim YO, Won S, Chun J.	Front Microbiol	10.3389/fmicb.2019.00834	2019
Metabolism	ESAT-6 secretion-independent impact of ESX-1 genes espF and espG1 on virulence of Mycobacterium tuberculosis.	Bottai D, Majlessi L, Simeone R, Frigui W, Laurent C, Lenormand P, Chen J, Rosenkrands I, Huerre M, Leclerc C, Cole ST, Brosch R.	J Infect Dis	10.1093/infdis/jiq089	2011
Enzymology	Prevalence of tuberculous lesion in cattle slaughtered in Mubende district, Uganda.	Nalapa DP, Muwonge A, Kankya C, Olea-Popelka F.	BMC Vet Res	10.1186/s12917-017-0991-x	2017
Pathogenicity	A New Phylogenetic Framework for the Animal-Adapted Mycobacterium tuberculosis Complex.	Brites D, Loiseau C, Menardo F, Borrell S, Boniotti MB, Warren R, Dippenaar A, Parsons SDC, Beisel C, Behr MA, Fyfe JA, Coscolla M, Gagneux S.	Front Microbiol	10.3389/fmicb.2018.02820	2018
	Diversity and evolution of drug resistance mechanisms in Mycobacterium tuberculosis.	Al-Saeedi M, Al-Hajoj S.	Infect Drug Resist	10.2147/idr.s144446	2017
Enzymology	Reduced transmission of Mycobacterium africanum compared to Mycobacterium tuberculosis in urban West Africa.	Asare P, Asante-Poku A, Prah DA, Borrell S, Osei-Wusu S, Otchere ID, Forson A, Adjapong G, Koram KA, Gagneux S, Yeboah-Manu D.	Int J Infect Dis	10.1016/j.ijid.2018.05.014	2018
Pathogenicity	Antimycobacterial and cytotoxic activity of selected medicinal plant extracts.	Nguta JM, Appiah-Opong R, Nyarko AK, Yeboah-Manu D, Addo PG, Otchere I, Kissi-Twum A.	J Ethnopharmacol	10.1016/j.jep.2016.02.010	2016
	The Mycobacterium tuberculosis membrane protein Rv0180c: Evaluation of peptide sequences implicated in mycobacterial invasion of two human cell lines.	Caceres SM, Ocampo M, Arevalo-Pinzon G, Jimenez RA, Patarroyo ME, Patarroyo MA.	Peptides	10.1016/j.peptides.2010.09.017	2011
Phylogeny	Evaluation of complementary diagnostic tools for bovine tuberculosis detection in dairy herds from India.	Thakur MK, Sinha DK, Singh BR.	Vet World	10.14202/vetworld.2016.862-868	2016
	Mycobacterium microti infection in two meerkats (Suricata suricatta).	Palgrave CJ, Benato L, Eatwell K, Laurenson IF, Smith NH.	J Comp Pathol	10.1016/j.jcpa.2011.06.001	2012
Phylogeny	Non-tuberculous Mycobacterium species causing mycobacteriosis in farmed aquatic animals of South Africa.	Gcebe N, Michel AL, Hlokwe TM.	BMC Microbiol	10.1186/s12866-018-1177-9	2018
	The pathogenic mechanism of Mycobacterium tuberculosis: implication for new drug development.	Yan W, Zheng Y, Dou C, Zhang G, Arnaout T, Cheng W.	Mol Biomed	10.1186/s43556-022-00106-y	2022
	The ESX-1 Substrate PPE68 Has a Key Function in ESX-1-Mediated Secretion in Mycobacterium marinum.	Damen MPM, Meijers AS, Keizer EM, Piersma SR, Jimenez CR, Kuijl CP, Bitter W, Houben ENG.	mBio	10.1128/mbio.02819-22	2022
	The Hidden Threat: Rodent-Borne Viruses and Their Impact on Public Health.	Shehata AA, Parvin R, Tasnim S, Duarte PM, Rodriguez-Morales AJ, Basiouni S.	Viruses	10.3390/v17060809	2025
	Cell-wall synthesis and ribosome maturation are co-regulated by an RNA switch in Mycobacterium tuberculosis.	Schwenk S, Moores A, Nobeli I, McHugh TD, Arnvig KB.	Nucleic Acids Res	10.1093/nar/gky226	2018
Phylogeny	A single-nucleotide mutation in the -10 promoter region inactivates the narK2X promoter in Mycobacterium bovis and Mycobacterium bovis BCG and has an application in diagnosis.	Chauhan S, Singh A, Tyagi JS.	FEMS Microbiol Lett	10.1111/j.1574-6968.2009.01876.x	2010
Metabolism	Mucosal delivery of ESX-1-expressing BCG strains provides superior immunity against tuberculosis in murine type 2 diabetes.	Sathkumara HD, Muruganandah V, Cooper MM, Field MA, Alim MA, Brosch R, Ketheesan N, Govan B, Rush CM, Henning L, Kupz A.	Proc Natl Acad Sci U S A	10.1073/pnas.2003235117	2020
	Mycobacterium tuberculosis pyomyositis in an infant.	Malik Z, Shehab M.	Ann Med Health Sci Res	10.4103/2141-9248.113681	2013
Phylogeny	Mycobacterial infections in wild boars (Sus scrofa) from Southern Switzerland: Diagnostic improvements, epidemiological situation and zoonotic potential.	Ghielmetti G, Hilbe M, Friedel U, Menegatti C, Bacciarini L, Stephan R, Bloemberg G.	Transbound Emerg Dis	10.1111/tbed.13717	2021
	Synthesis and Biological Evaluation of New Hydrazone Derivatives of Quinoline and Their Cu(II) and Zn(II) Complexes against Mycobacterium tuberculosis.	Mandewale MC, Thorat B, Shelke D, Yamgar R.	Bioinorg Chem Appl	10.1155/2015/153015	2015
	Spatio-Temporal Distribution of Mycobacterium tuberculosis Complex Strains in Ghana.	Yeboah-Manu D, Asare P, Asante-Poku A, Otchere ID, Osei-Wusu S, Danso E, Forson A, Koram KA, Gagneux S.	PLoS One	10.1371/journal.pone.0161892	2016
Genetics	Genomic determinants of speciation and spread of the Mycobacterium tuberculosis complex.	Chiner-Oms A, Sanchez-Buso L, Corander J, Gagneux S, Harris SR, Young D, Gonzalez-Candelas F, Comas I.	Sci Adv	10.1126/sciadv.aaw3307	2019
Phylogeny	[Differentiation of species within the Mycobacterium tuberculosis complex by molecular techniques].	Herrera-Leon L, Pozuelo-Diaz R, Molina Moreno T, Valverde Cobacho A, Saiz Vega P, Jimenez Pajares MS.	Enferm Infecc Microbiol Clin	10.1016/j.eimc.2009.01.008	2009
Genetics	Genomic analyses of the ancestral Manila family of Mycobacterium tuberculosis.	Wan X, Koster K, Qian L, Desmond E, Brostrom R, Hou S, Douglas JT.	PLoS One	10.1371/journal.pone.0175330	2017
	The methylation state of VDR gene in pulmonary tuberculosis patients.	Jiang C, Zhu J, Liu Y, Luan X, Jiang Y, Jiang G, Fan J.	J Thorac Dis	10.21037/jtd.2017.09.107	2017
Phylogeny	Animal-adapted members of the Mycobacterium tuberculosis complex endemic to the southern African subregion.	Clarke C, Van Helden P, Miller M, Parsons S.	J S Afr Vet Assoc	10.4102/jsava.v87i1.1322	2016
Genetics	Circulation of M. tuberculosis Beijing genotype in Latin America and the Caribbean.	Cerezo-Cortes MI, Rodriguez-Castillo JG, Hernandez-Pando R, Murcia MI.	Pathog Glob Health	10.1080/20477724.2019.1710066	2019
	Isoniazid and host immune system interactions: A proposal for a novel comprehensive mode of action.	Khan SR, Manialawy Y, Siraki AG.	Br J Pharmacol	10.1111/bph.14867	2019
Metabolism	PPE37 Is Essential for Mycobacterium tuberculosis Heme-Iron Acquisition (HIA), and a Defective PPE37 in Mycobacterium bovis BCG Prevents HIA.	Tullius MV, Nava S, Horwitz MA.	Infect Immun	10.1128/iai.00540-18	2019
Enzymology	Impact of the Mycobaterium africanum West Africa 2 Lineage on TB Diagnostics in West Africa: Decreased Sensitivity of Rapid Identification Tests in The Gambia.	Ofori-Anyinam B, Kanuteh F, Agbla SC, Adetifa I, Okoi C, Dolganov G, Schoolnik G, Secka O, Antonio M, de Jong BC, Gehre F.	PLoS Negl Trop Dis	10.1371/journal.pntd.0004801	2016
Metabolism	Bioinformatic and mutational studies of related toxin-antitoxin pairs in Mycobacterium tuberculosis predict and identify key functional residues.	Tandon H, Sharma A, Wadhwa S, Varadarajan R, Singh R, Singh R, Srinivasan N, Sandhya S.	J Biol Chem	10.1074/jbc.ra118.006814	2019
Metabolism	Conserved ESX-1 Substrates EspE and EspF Are Virulence Factors That Regulate Gene Expression.	Chirakos AE, Nicholson KR, Huffman A, Champion PA.	Infect Immun	10.1128/iai.00289-20	2020
	Comparative study of IFNgamma and antibody tests for feline tuberculosis.	Rhodes SG, Gunn-Mooore D, Boschiroli ML, Schiller I, Esfandiari J, Greenwald R, Lyashchenko KP.	Vet Immunol Immunopathol	10.1016/j.vetimm.2011.07.020	2011
Enzymology	The performance of interferon-gamma release assay in nontuberculous mycobacterial diseases: a retrospective study in China.	Wang MS, Wang JL, Wang XF.	BMC Pulm Med	10.1186/s12890-016-0320-3	2016
	Reactogenicity to major tuberculosis antigens absent in BCG is linked to improved protection against Mycobacterium tuberculosis.	Aguilo N, Gonzalo-Asensio J, Alvarez-Arguedas S, Marinova D, Gomez AB, Uranga S, Spallek R, Singh M, Audran R, Spertini F, Martin C.	Nat Commun	10.1038/ncomms16085	2017
Genetics	The Impact of Genome Region of Difference 4 (RD4) on Mycobacterial Virulence and BCG Efficacy.	Ru H, Liu X, Lin C, Yang J, Chen F, Sun R, Zhang L, Liu J.	Front Cell Infect Microbiol	10.3389/fcimb.2017.00239	2017
Metabolism	Characterization of differential pore-forming activities of ESAT-6 proteins from Mycobacterium tuberculosis and Mycobacterium smegmatis.	Peng X, Jiang G, Liu W, Zhang Q, Qian W, Sun J.	FEBS Lett	10.1002/1873-3468.12072	2016
	Molecular epidemiology of Mycobacterium africanum in Ghana.	Asante-Poku A, Otchere ID, Osei-Wusu S, Sarpong E, Baddoo A, Forson A, Laryea C, Borrell S, Bonsu F, Hattendorf J, Ahorlu C, Koram KA, Gagneux S, Yeboah-Manu D.	BMC Infect Dis	10.1186/s12879-016-1725-6	2016
Phylogeny	Mycobacterium microti--pulmonary tuberculosis in an immunocompetent patient.	Frank W, Reisinger EC, Brandt-Hamerla W, Schwede I, Handrick W.	Wien Klin Wochenschr	10.1007/s00508-009-1164-0	2009
Genetics	Complete Genome Sequencing of Mycobacterium bovis SP38 and Comparative Genomics of Mycobacterium bovis and M. tuberculosis Strains.	Zimpel CK, Brandao PE, de Souza Filho AF, de Souza RF, Ikuta CY, Ferreira Neto JS, Camargo NCS, Heinemann MB, Guimaraes AMS.	Front Microbiol	10.3389/fmicb.2017.02389	2017
	Characterization of mycobacterium isolates from pulmomary tuberculosis suspected cases visiting Tuberculosis Reference Laboratory at Ethiopian Health and Nutrition Research Institute, Addis Ababa Ethiopia: a cross sectional study.	Mathewos B, Kebede N, Kassa T, Mihret A, Getahun M.	Asian Pac J Trop Med	10.1016/s1995-7645(14)60184-x	2015
Metabolism	A protein linkage map of the ESAT-6 secretion system 1 (ESX-1) of Mycobacterium tuberculosis.	Teutschbein J, Schumann G, Mollmann U, Grabley S, Cole ST, Munder T.	Microbiol Res	10.1016/j.micres.2006.11.016	2009
	Synthesis and Tuberculostatic Activity Evaluation of Novel Benzazoles with Alkyl, Cycloalkyl or Pyridine Moiety.	Krause M, Foks H, Augustynowicz-Kopec E, Napiorkowska A, Szczesio M, Gobis K.	Molecules	10.3390/molecules23040985	2018
	An attenuated Mycobacterium tuberculosis clinical strain with a defect in ESX-1 secretion induces minimal host immune responses and pathology.	Clemmensen HS, Knudsen NPH, Rasmussen EM, Winkler J, Rosenkrands I, Ahmad A, Lillebaek T, Sherman DR, Andersen PL, Aagaard C.	Sci Rep	10.1038/srep46666	2017
	A review of tuberculosis at the wildlife-livestock-human interface in Zambia.	Malama S, Muma JB, Godfroid J.	Infect Dis Poverty	10.1186/2049-9957-2-13	2013
	Detection and characterization of drug-resistant conferring genes in Mycobacterium tuberculosis complex strains: A prospective study in two distant regions of Ghana.	Otchere ID, Asante-Poku A, Osei-Wusu S, Baddoo A, Sarpong E, Ganiyu AH, Aboagye SY, Forson A, Bonsu F, Yahayah AI, Koram K, Gagneux S, Yeboah-Manu D.	Tuberculosis (Edinb)	10.1016/j.tube.2016.05.014	2016
	Tuberculosis in the wild boar: Frequentist and Bayesian estimations of diagnostic test parameters when Mycobacterium bovis is present in wild boars but at low prevalence.	Richomme C, Courcoul A, Moyen JL, Reveillaud E, Maestrini O, de Cruz K, Drapeau A, Boschiroli ML.	PLoS One	10.1371/journal.pone.0222661	2019
	Multiple granulomas in three squirrel monkeys (Saimiri sciureus) caused by Mycobacterium microti.	Henrich M, Moser I, Weiss A, Reinacher M.	J Comp Pathol	10.1016/j.jcpa.2007.06.005	2007
	Identification of Potential Binders of Mtb Universal Stress Protein (Rv1636) Through an in silico Approach and Insights Into Compound Selection for Experimental Validation.	Chakraborti S, Chakraborty M, Bose A, Srinivasan N, Visweswariah SS.	Front Mol Biosci	10.3389/fmolb.2021.599221	2021
Enzymology	Tuberculosis caused by Mycobacterium microti in South American camelids.	Zanolari P, Robert N, Lyashchenko KP, Pfyffer GE, Greenwald R, Esfandiari J, Meylan M.	J Vet Intern Med	10.1111/j.1939-1676.2009.0377.x	2009
	Mycobacterium microti: Not Just a Coincidental Pathogen for Cats.	Peterhans S, Landolt P, Friedel U, Oberhansli F, Dennler M, Willi B, Senn M, Hinden S, Kull K, Kipar A, Stephan R, Ghielmetti G.	Front Vet Sci	10.3389/fvets.2020.590037	2020
Enzymology	Disseminated Mycobacterium tuberculosis infection in a dog.	Martinho AP, Franco MM, Ribeiro MG, Perrotti IB, Mangia SH, Megid J, Vulcano LC, Lara GH, Santos AC, Leite CQ, de Carvalho Sanches O, Paes AC.	Am J Trop Med Hyg	10.4269/ajtmh.12-0332	2013
	Does Polymerase Chain Reaction of Tissue Specimens Aid in the Diagnosis of Tuberculosis?	Lee YJ, Kim S, Kang Y, Jung J, Lee E, Kim JY, Lee JH, Lee Y, Chae YS, Kim CH.	J Pathol Transl Med	10.4132/jptm.2016.08.04	2016
Enzymology	Transmission of Mycobacterium orygis (M. tuberculosis complex species) from a tuberculosis patient to a dairy cow in New Zealand.	Dawson KL, Bell A, Kawakami RP, Coley K, Yates G, Collins DM.	J Clin Microbiol	10.1128/jcm.01652-12	2012
Transcriptome	Mycobacterial infection after intravesical bacillus Calmette-Guërin treatment for bladder cancer: a case report.	Park CH, Jang MA, Ahn YH, Hwang YY, Ki CS, Lee NY.	Korean J Lab Med	10.3343/kjlm.2011.31.3.197	2011
	Specific Proteins in Nontuberculous Mycobacteria: New Potential Tools.	Orduna P, Castillo-Rodal AI, Mercado ME, Ponce de Leon S, Lopez-Vidal Y.	Biomed Res Int	10.1155/2015/964178	2015
	Study of the gyrB gene polymorphism as a tool to differentiate among Mycobacterium tuberculosis complex subspecies further underlines the older evolutionary age of 'Mycobacterium canettii'.	Goh KS, Fabre M, Huard RC, Schmid S, Sola C, Rastogi N.	Mol Cell Probes	10.1016/j.mcp.2005.11.008	2006
Pathogenicity	Single-nucleotide polymorphism-based differentiation and drug resistance detection in Mycobacterium tuberculosis from isolates or directly from sputum.	Arnold C, Westland L, Mowat G, Underwood A, Magee J, Gharbia S.	Clin Microbiol Infect	10.1111/j.1469-0691.2004.01034.x	2005
Enzymology	Infection with Mycobacterium microti in animals in France.	Michelet L, de Cruz K, Zanella G, Aaziz R, Bulach T, Karoui C, Henault S, Joncour G, Boschiroli ML.	J Clin Microbiol	10.1128/jcm.02713-14	2015
Genetics	Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches.	Otchere ID, Coscolla M, Sanchez-Buso L, Asante-Poku A, Brites D, Loiseau C, Meehan C, Osei-Wusu S, Forson A, Laryea C, Yahayah AI, Baddoo A, Ansa GA, Aboagye SY, Asare P, Borrell S, Gehre F, Beckert P, Kohl TA, N'dira S, Beisel C, Antonio M, Niemann S, de Jong BC, Parkhill J, Harris SR, Gagneux S, Yeboah-Manu D.	Sci Rep	10.1038/s41598-018-29620-2	2018
	Multiplexed Quantitation of Intraphagocyte Mycobacterium tuberculosis Secreted Protein Effectors.	Sayes F, Blanc C, Ates LS, Deboosere N, Orgeur M, Le Chevalier F, Groschel MI, Frigui W, Song OR, Lo-Man R, Brossier F, Sougakoff W, Bottai D, Brodin P, Charneau P, Brosch R, Majlessi L.	Cell Rep	10.1016/j.celrep.2018.03.125	2018
	Development of sample clean up methods for the analysis of Mycobacterium tuberculosis methyl mycocerosate biomarkers in sputum extracts by gas chromatography-mass spectrometry.	Nicoara SC, Turner NW, Minnikin DE, Lee OY, O'Sullivan DM, McNerney R, Mutetwa R, Corbett LE, Morgan GH.	J Chromatogr B Analyt Technol Biomed Life Sci	10.1016/j.jchromb.2015.02.010	2015
	Non-tuberculous Mycobacteria can Cause Disseminated Mycobacteriosis in Cats.	Pekkarinen H, Airas N, Savolainen LE, Rantala M, Kilpinen S, Miuku O, Speeti M, Karkamo V, Malkamaki S, Vaara M, Sukura A, Syrja P.	J Comp Pathol	10.1016/j.jcpa.2018.02.002	2018
	Mycobacterial Etiology of Pulmonary Tuberculosis and Association with HIV Infection and Multidrug Resistance in Northern Nigeria.	Aliyu G, El-Kamary SS, Abimiku A, Ezati N, Mosunmola I, Hungerford L, Brown C, Tracy KJ, Obasanya J, Blattner W.	Tuberc Res Treat	10.1155/2013/650561	2013
Enzymology	Evolutionary Trends of the Transposase-Encoding Open Reading Frames A and B (orfA and orfB) of the Mycobacterial IS6110 Insertion Sequence.	Thabet S, Namouchi A, Mardassi H.	PLoS One	10.1371/journal.pone.0130161	2015
	Mycobacterium bovis tenosynovitis.	Unsworth JD, Bonington A.	BMJ Case Rep	10.1136/bcr-2013-009257	2013
	First report of nodular skin lesions caused by Mycobacterium nebraskense in a 9-year-old cat.	Niederhauser S, Klauser L, Bolliger J, Friedel U, Schmitt S, Ruetten M, Greene CE, Ghielmetti G.	JFMS Open Rep	10.1177/2055116918792685	2018
Enzymology	Development of a novel PCR restriction analysis of the hsp65 gene as a rapid method to screen for the Mycobacterium tuberculosis complex and nontuberculous mycobacteria in high-burden countries.	Varma-Basil M, Garima K, Pathak R, Dwivedi SK, Narang A, Bhatnagar A, Bose M.	J Clin Microbiol	10.1128/jcm.03067-12	2013
	Primary hepatic Mycobacterium tuberculosis complex infection with terminal dissemination in a pig-tailed macaque (Macaca nemestrina).	Stockinger DE, Roellich KM, Vogel KW, Eiffert KL, Torrence AE, Prentice JL, Stephens KG, Wallis CK, Hotchkiss CE, Murnane RD.	J Am Assoc Lab Anim Sci		2011
	Optimizing multiplex SNP-based data analysis for genotyping of Mycobacterium tuberculosis isolates.	Sengstake S, Bablishvili N, Schuitema A, Bzekalava N, Abadia E, de Beer J, Tadumadze N, Akhalaia M, Tuin K, Tukvadze N, Aspindzelashvili R, Bachiyska E, Panaiotov S, Sola C, van Soolingen D, Klatser P, Anthony R, Bergval I.	BMC Genomics	10.1186/1471-2164-15-572	2014
	Mycobacterial brain tuberculomas due to Bacille Calmette-Guérin intravesical chemotherapy for bladder cancer: A case report and literature review.	Golub V, Malhotra P, Patel S.	Can J Infect Dis Med Microbiol	10.1155/2011/869286	2011
	Enhanced protection against tuberculosis by vaccination with recombinant Mycobacterium microti vaccine that induces T cell immunity against region of difference 1 antigens.	Brodin P, Majlessi L, Brosch R, Smith D, Bancroft G, Clark S, Williams A, Leclerc C, Cole ST.	J Infect Dis	10.1086/421468	2004
Enzymology	[Application of multiplex polymerase chain reaction in rapid identification of Mycobacterium bovis BCG].	Li GL, Chen BW, Zhuang YH, Wang GZ, Zhao M, Shen XB, Sun GZ.	Zhonghua Jie He He Hu Xi Za Zhi		2003
Enzymology	Identification of an IS6110 insertion site in plcD, the unique phospholipase C gene of Mycobacterium bovis.	Viana-Niero C, Rodriguez CAR, Bigi F, Zanini MS, Ferreira-Neto JS, Cataldi A, Leao SC.	J Med Microbiol	10.1099/jmm.0.46364-0	2006
Enzymology	Landouzy septicemia (sepsis tuberculosa acutissima) due to Mycobacterium microti in an immunocompetent man.	Geiss HK, Feldhues R, Niemann S, Nolte O, Rieker R.	Infection	10.1007/s15010-005-5075-3	2005
	Differential regulation of the two-component regulatory system senX3-regX3 in Mycobacterium tuberculosis.	Rifat D, Karakousis PC.	Microbiology (Reading)	10.1099/mic.0.077180-0	2014
Genetics	Global variation in bacterial strains that cause tuberculosis disease: a systematic review and meta-analysis.	Wiens KE, Woyczynski LP, Ledesma JR, Ross JM, Zenteno-Cuevas R, Goodridge A, Ullah I, Mathema B, Djoba Siawaya JF, Biehl MH, Ray SE, Bhattacharjee NV, Henry NJ, Reiner RC, Kyu HH, Murray CJL, Hay SI.	BMC Med	10.1186/s12916-018-1180-x	2018
Phylogeny	Macro-array and bioinformatic analyses reveal mycobacterial 'core' genes, variation in the ESAT-6 gene family and new phylogenetic markers for the Mycobacterium tuberculosis complex.	Marmiesse M, Brodin P, Buchrieser C, Gutierrez C, Simoes N, Vincent V, Glaser P, Cole ST, Brosch R.	Microbiology (Reading)	10.1099/mic.0.26662-0	2004
Genetics	PolyTB: a genomic variation map for Mycobacterium tuberculosis.	Coll F, Preston M, Guerra-Assuncao JA, Hill-Cawthorn G, Harris D, Perdigao J, Viveiros M, Portugal I, Drobniewski F, Gagneux S, Glynn JR, Pain A, Parkhill J, McNerney R, Martin N, Clark TG.	Tuberculosis (Edinb)	10.1016/j.tube.2014.02.005	2014
	Recombinant BCG exporting ESAT-6 confers enhanced protection against tuberculosis.	Pym AS, Brodin P, Majlessi L, Brosch R, Demangel C, Williams A, Griffiths KE, Marchal G, Leclerc C, Cole ST.	Nat Med	10.1038/nm859	2003
	Environmental DNA: A promising factor for tuberculosis risk assessment in multi-host settings.	Martinez-Guijosa J, Romero B, Infantes-Lorenzo JA, Diez E, Boadella M, Balseiro A, Veiga M, Navarro D, Moreno I, Ferreres J, Dominguez M, Fernandez C, Dominguez L, Gortazar C.	PLoS One	10.1371/journal.pone.0233837	2020
	Precision methylome characterization of Mycobacterium tuberculosis complex (MTBC) using PacBio single-molecule real-time (SMRT) technology.	Zhu L, Zhong J, Jia X, Liu G, Kang Y, Dong M, Zhang X, Li Q, Yue L, Li C, Fu J, Xiao J, Yan J, Zhang B, Lei M, Chen S, Lv L, Zhu B, Huang H, Chen F.	Nucleic Acids Res	10.1093/nar/gkv1498	2016
	Mycobacterium tuberculosis pili (MTP), a putative biomarker for a tuberculosis diagnostic test.	Naidoo N, Ramsugit S, Pillay M.	Tuberculosis (Edinb)	10.1016/j.tube.2014.03.004	2014
Genetics	Identification of genetic markers for Mycobacterium pinnipedii through genome analysis.	Bigi F, Garcia-Pelayo MC, Nunez-Garcia J, Peralta A, Caimi KC, Golby P, Hinds J, Cataldi A, Gordon SV, Romano MI.	FEMS Microbiol Lett	10.1016/j.femsle.2005.05.034	2005
	Combined Genotypic, Phylogenetic, and Epidemiologic Analyses of Mycobacterium tuberculosis Genetic Diversity in the Rhône Alpes Region, France.	Pichat C, Couvin D, Carret G, Fredenucci I, Jacomo V, Carricajo A, Boisset S, Dumitrescu O, Flandrois JP, Lina G, Rastogi N.	PLoS One	10.1371/journal.pone.0153580	2016
Metabolism	EspR-dependent ESAT-6 Protein Secretion of Mycobacterium tuberculosis Requires the Presence of Virulence Regulator PhoP.	Anil Kumar V, Goyal R, Bansal R, Singh N, Sevalkar RR, Kumar A, Sarkar D.	J Biol Chem	10.1074/jbc.m116.746289	2016
	Mycobacterial panniculitis caused by Mycobacterium thermoresistibile in a cat.	Vishkautsan P, Reagan KL, Keel MK, Sykes JE.	JFMS Open Rep	10.1177/2055116916672786	2016
Phylogeny	Rapid and specific detection of the Mycobacterium tuberculosis complex using fluorogenic probes andreal-time PCR.	Kraus G, Cleary T, Miller N, Seivright R, Young AK, Spruill G, Hnatyszyn HJ.	Mol Cell Probes	10.1006/mcpr.2001.0385	2001
	Microarray analysis of Mycobacterium microti reveals deletion of genes encoding PE-PPE proteins and ESAT-6 family antigens.	Garcia-Pelayo MC, Caimi KC, Inwald JK, Hinds J, Bigi F, Romano MI, van Soolingen D, Hewinson RG, Cataldi A, Gordon SV.	Tuberculosis (Edinb)	10.1016/j.tube.2003.12.002	2004
Pathogenicity	Pyrazinamide susceptibility testing in Mycobacterium tuberculosis: a systematic review with meta-analyses.	Chang KC, Yew WW, Zhang Y.	Antimicrob Agents Chemother	10.1128/aac.00630-11	2011
Enzymology	Mycobacterium bovis BCG vertebral osteomyelitis after intravesical BCG therapy, diagnosed by PCR-based genomic deletion analysis.	Nikaido T, Ishibashi K, Otani K, Yabuki S, Konno S, Mori S, Ohashi K, Ishida T, Nakano M, Yamaguchi O, Suzutani T, Kikuchi S.	J Clin Microbiol	10.1128/jcm.01714-07	2007
	Loss of RD1 contributed to the attenuation of the live tuberculosis vaccines Mycobacterium bovis BCG and Mycobacterium microti.	Pym AS, Brodin P, Brosch R, Huerre M, Cole ST.	Mol Microbiol	10.1046/j.1365-2958.2002.03237.x	2002
Pathogenicity	Rapid detection of rpoB gene mutations conferring rifampin resistance in Mycobacterium tuberculosis.	Ao W, Aldous S, Woodruff E, Hicke B, Rea L, Kreiswirth B, Jenison R.	J Clin Microbiol	10.1128/jcm.00208-12	2012
	Designing tuberculosis vaccine efficacy trials - lessons from recent studies.	Ginsberg AM.	Expert Rev Vaccines	10.1080/14760584.2019.1593143	2019
	Location of functional groups in mycobacterial meromycolate chains; the recognition of new structural principles in mycolic acids.	Watanabe M, Aoyagi Y, Mitome H, Fujita T, Naoki H, Ridell M, Minnikin DE.	Microbiology (Reading)	10.1099/00221287-148-6-1881	2002
Enzymology	Two cases of Mycobacterium microti-induced culture-negative tuberculosis.	de Jong E, Rentenaar RJ, van Pelt R, de Lange W, Schreurs W, van Soolingen D, Sturm PD.	J Clin Microbiol	10.1128/jcm.00772-09	2009
Genetics	Population structure and circulating genotypes of drug-sensitive and drug-resistant Mycobacterium tuberculosis clinical isolates in São Paulo state, Brazil.	Martins MC, Giampaglia CM, Oliveira RS, Simonsen V, Latrilha FO, Moniz LL, Couvin D, Rastogi N, Ferrazoli L.	Infect Genet Evol	10.1016/j.meegid.2012.10.015	2013
Enzymology	Mycobacterium microti infection associated with spindle cell pseudotumour and hypercalcaemia: a possible link with an infected alpaca.	McGoldrick C, Coghlin C, Seagar AL, Laurenson I, Smith NH, Stewart WC, Kerr KM, Douglas JG.	BMJ Case Rep	10.1136/bcr.11.2009.2484	2010
Phylogeny	Evolutionary history of tuberculosis shaped by conserved mutations in the PhoPR virulence regulator.	Gonzalo-Asensio J, Malaga W, Pawlik A, Astarie-Dequeker C, Passemar C, Moreau F, Laval F, Daffe M, Martin C, Brosch R, Guilhot C.	Proc Natl Acad Sci U S A	10.1073/pnas.1406693111	2014
	Global analyses of TetR family transcriptional regulators in mycobacteria indicates conservation across species and diversity in regulated functions.	Balhana RJ, Singla A, Sikder MH, Withers M, Kendall SL.	BMC Genomics	10.1186/s12864-015-1696-9	2015
Phylogeny	Epidemiology of Nontuberculous Mycobacteria in French Polynesia.	Phelippeau M, Osman DA, Musso D, Drancourt M.	J Clin Microbiol	10.1128/jcm.01560-15	2015
	Protective Effect of Oral BCG and Inactivated Mycobacterium bovis Vaccines in European Badgers (Meles meles) Experimentally Infected With M. bovis.	Balseiro A, Prieto JM, Alvarez V, Lesellier S, Dave D, Salguero FJ, Sevilla IA, Infantes-Lorenzo JA, Garrido JM, Adriaensen H, Juste RA, Barral M.	Front Vet Sci	10.3389/fvets.2020.00041	2020
Metabolism	Induced ectopic expression of HigB toxin in Mycobacterium tuberculosis results in growth inhibition, reduced abundance of a subset of mRNAs and cleavage of tmRNA.	Schuessler DL, Cortes T, Fivian-Hughes AS, Lougheed KE, Harvey E, Buxton RS, Davis EO, Young DB.	Mol Microbiol	10.1111/mmi.12358	2013
Enzymology	Cytokine and Chemokine Concentrations as Biomarkers of Feline Mycobacteriosis.	O'Halloran C, McCulloch L, Rentoul L, Alexander J, Hope JC, Gunn-Moore DA.	Sci Rep	10.1038/s41598-018-35571-5	2018
Phylogeny	Separation and characterization of individual mycolic acids in representative mycobacteria.	Watanabe M, Aoyagi Y, Ridell M, Minnikin DE.	Microbiology (Reading)	10.1099/00221287-147-7-1825	2001
Genetics	Non-contiguous genome sequence of Mycobacterium simiae strain DSM 44165(T.).	Sassi M, Robert C, Raoult D, Drancourt M.	Stand Genomic Sci	10.4056/sigs.3707349	2013
	Detection and identification of mycobacteria in sputum from suspected tuberculosis patients.	Hatta M, Sultan AR, Tandirogang N, Masjudi, Yadi.	BMC Res Notes	10.1186/1756-0500-3-72	2010
Metabolism	SNP/RD typing of Mycobacterium tuberculosis Beijing strains reveals local and worldwide disseminated clonal complexes.	Schurch AC, Kremer K, Hendriks AC, Freyee B, McEvoy CR, van Crevel R, Boeree MJ, van Helden P, Warren RM, Siezen RJ, van Soolingen D.	PLoS One	10.1371/journal.pone.0028365	2011
Genetics	Identification of variable regions in the genomes of tubercle bacilli using bacterial artificial chromosome arrays.	Gordon SV, Brosch R, Billault A, Garnier T, Eiglmeier K, Cole ST.	Mol Microbiol	10.1046/j.1365-2958.1999.01383.x	1999
	A novel polymorphic genetic locus in members of the Mycobacterium tuberculosis complex.	Rauzier J, Gormley E, Gutierrez MC, Kassa-Kelembho E, Sandall LJ, Dupont C, Gicquel B, Murray A.	Microbiology (Reading)	10.1099/13500872-145-7-1695	1999
	Membrane surface of Mycobacterium microti-infected macrophages antigenically differs from that of uninfected macrophages.	Majumdar S, Kaur H, Vohra H, Varshney GC.	FEMS Immunol Med Microbiol	10.1111/j.1574-695x.2000.tb01459.x	2000
	Efficacies of BCG and vole bacillus (Mycobacterium microti) vaccines in preventing clinically apparent pulmonary tuberculosis in rabbits: a preliminary report.	Dannenberg AM, Bishai WR, Parrish N, Ruiz R, Johnson W, Zook BC, Boles JW, Pitt LM.	Vaccine	10.1016/s0264-410x(00)00300-5	2000
Phylogeny	First worldwide proficiency study on variable-number tandem-repeat typing of Mycobacterium tuberculosis complex strains.	de Beer JL, Kremer K, Kodmon C, Supply P, van Soolingen D, Global Network for the Molecular Surveillance of Tuberculosis 2009.	J Clin Microbiol	10.1128/jcm.00607-11	2012
Enzymology	Isolation of a Mycobacterium microti-like organism from a rock hyrax (Procavia capensis) in a Canadian zoo.	Lutze-Wallace C, Turcotte C, Glover G, Cousins D, Bell J, Berlie-Surujballi G, Barbeau Y, Randall G.	Can Vet J		2006
	A single-step sequencing method for the identification of Mycobacterium tuberculosis complex species.	Djelouadji Z, Raoult D, Daffe M, Drancourt M.	PLoS Negl Trop Dis	10.1371/journal.pntd.0000253	2008
Metabolism	Characterization of the major formamidopyrimidine-DNA glycosylase homolog in Mycobacterium tuberculosis and its linkage to variable tandem repeats.	Olsen I, Balasingham SV, Davidsen T, Debebe E, Rodland EA, van Soolingen D, Kremer K, Alseth I, Tonjum T.	FEMS Immunol Med Microbiol	10.1111/j.1574-695x.2009.00562.x	2009
	SecB-like chaperone controls a toxin-antitoxin stress-responsive system in Mycobacterium tuberculosis.	Bordes P, Cirinesi AM, Ummels R, Sala A, Sakr S, Bitter W, Genevaux P.	Proc Natl Acad Sci U S A	10.1073/pnas.1101189108	2011
	Evolution of smooth tubercle Bacilli PE and PE_PGRS genes: evidence for a prominent role of recombination and imprint of positive selection.	Namouchi A, Karboul A, Fabre M, Gutierrez MC, Mardassi H.	PLoS One	10.1371/journal.pone.0064718	2013
Genetics	Comparative genomics of Esx genes from clinical isolates of Mycobacterium tuberculosis provides evidence for gene conversion and epitope variation.	Uplekar S, Heym B, Friocourt V, Rougemont J, Cole ST.	Infect Immun	10.1128/iai.05344-11	2011
	Occurrence and Distribution of bovine tuberculosis (Mycobacterium bovis) in Slaughtered cattle in the abattoirs of Bauchi State, Nigeria.	Saidu AS, Okolocha EC, Gamawa AA, Babashani M, Bakari NA.	Vet World	10.14202/vetworld.2015.432-437	2015
Pathogenicity	Rodents as Hosts of Pathogens and Related Zoonotic Disease Risk.	Dahmana H, Granjon L, Diagne C, Davoust B, Fenollar F, Mediannikov O.	Pathogens	10.3390/pathogens9030202	2020
	Detection and molecular characterization of 9,000-year-old Mycobacterium tuberculosis from a Neolithic settlement in the Eastern Mediterranean.	Hershkovitz I, Donoghue HD, Minnikin DE, Besra GS, Lee OY, Gernaey AM, Galili E, Eshed V, Greenblatt CL, Lemma E, Bar-Gal GK, Spigelman M.	PLoS One	10.1371/journal.pone.0003426	2008
	A case of Pott's disease with epidural abscess and probable cerebral tuberculoma following Bacillus Calmette-Guérin therapy for superficial bladder cancer.	Josephson CB, Al-Azri S, Smyth DJ, Haase D, Johnston BL.	Can J Infect Dis Med Microbiol	10.1155/2010/572410	2010
Metabolism	Biosynthetic origin of the galactosamine substituent of Arabinogalactan in Mycobacterium tuberculosis.	Skovierova H, Larrouy-Maumus G, Pham H, Belanova M, Barilone N, Dasgupta A, Mikusova K, Gicquel B, Gilleron M, Brennan PJ, Puzo G, Nigou J, Jackson M.	J Biol Chem	10.1074/jbc.m110.188110	2010
Enzymology	Metabolic and bactericidal effects of targeted suppression of NadD and NadE enzymes in mycobacteria.	Rodionova IA, Schuster BM, Guinn KM, Sorci L, Scott DA, Li X, Kheterpal I, Shoen C, Cynamon M, Locher C, Rubin EJ, Osterman AL.	mBio	10.1128/mbio.00747-13	2014
Phylogeny	A novel pathogenic taxon of the Mycobacterium tuberculosis complex, Canetti: characterization of an exceptional isolate from Africa.	van Soolingen D, Hoogenboezem T, de Haas PE, Hermans PW, Koedam MA, Teppema KS, Brennan PJ, Besra GS, Portaels F, Top J, Schouls LM, van Embden JD.	Int J Syst Bacteriol	10.1099/00207713-47-4-1236	1997
	After the bottleneck: Genome-wide diversification of the Mycobacterium tuberculosis complex by mutation, recombination, and natural selection.	Namouchi A, Didelot X, Schock U, Gicquel B, Rocha EP.	Genome Res	10.1101/gr.129544.111	2012
	Drug resistance patterns in 111 cases of drug-resistant tuberculosis spine.	Mohan K, Rawall S, Pawar UM, Sadani M, Nagad P, Nene A, Nene A.	Eur Spine J	10.1007/s00586-012-2154-x	2013
Enzymology	Spatio-temporal trends in richness and persistence of bacterial communities in decline-phase water vole populations.	Villette P, Afonso E, Couval G, Levret A, Galan M, Goydadin AC, Cosson JF, Giraudoux P.	Sci Rep	10.1038/s41598-020-66107-5	2020
	Identification of Virulence Markers of Mycobacterium abscessus for Intracellular Replication in Phagocytes.	Dubois V, Laencina L, Bories A, Le Moigne V, Pawlik A, Herrmann JL, Girard-Misguich F.	J Vis Exp	10.3791/57766	2018
Enzymology	Characterization of the catalase-peroxidase gene (katG) and inhA locus in isoniazid-resistant and -susceptible strains of Mycobacterium tuberculosis by automated DNA sequencing: restricted array of mutations associated with drug resistance.	Musser JM, Kapur V, Williams DL, Kreiswirth BN, van Soolingen D, van Embden JD.	J Infect Dis	10.1093/infdis/173.1.196	1996
	Mycobacterium tuberculosis is a natural mutant with an inactivated oxidative-stress regulatory gene: implications for sensitivity to isoniazid.	Deretic V, Philipp W, Dhandayuthapani S, Mudd MH, Curcic R, Garbe T, Heym B, Via LE, Cole ST.	Mol Microbiol	10.1111/j.1365-2958.1995.mmi_17050889.x	1995
Enzymology	Definition of novel cell envelope associated proteins in Triton X-114 extracts of Mycobacterium tuberculosis H37Rv.	Malen H, Pathak S, Softeland T, de Souza GA, Wiker HG.	BMC Microbiol	10.1186/1471-2180-10-132	2010
Phylogeny	Human and animal infections with Mycobacterium microti, Scotland.	Xavier Emmanuel F, Seagar AL, Doig C, Rayner A, Claxton P, Laurenson I.	Emerg Infect Dis	10.3201/eid1312.061536	2007
Enzymology	Tuberculosis in imported hyrax (Procavia capensis) caused by an unusual variant belonging to the Mycobacterium tuberculosis complex.	Cousins DV, Peet RL, Gaynor WT, Williams SN, Gow BL.	Vet Microbiol	10.1016/0378-1135(94)90013-2	1994
Metabolism	The Mycobacterium tuberculosis early secreted antigenic target of 6 kDa inhibits T cell interferon-gamma production through the p38 mitogen-activated protein kinase pathway.	Peng H, Wang X, Barnes PF, Tang H, Townsend JC, Samten B.	J Biol Chem	10.1074/jbc.m111.234062	2011
Phylogeny	Detection and molecular characterization of Mycobacterium microti isolates in wild boar from northern Italy.	Boniotti MB, Gaffuri A, Gelmetti D, Tagliabue S, Chiari M, Mangeli A, Spisani M, Nassuato C, Gibelli L, Sacchi C, Zanoni M, Pacciarini ML.	J Clin Microbiol	10.1128/jcm.00440-14	2014
Metabolism	Long-range transcriptional control of an operon necessary for virulence-critical ESX-1 secretion in Mycobacterium tuberculosis.	Hunt DM, Sweeney NP, Mori L, Whalan RH, Comas I, Norman L, Cortes T, Arnvig KB, Davis EO, Stapleton MR, Green J, Buxton RS.	J Bacteriol	10.1128/jb.00142-12	2012
Phylogeny	Two new rapid SNP-typing methods for classifying Mycobacterium tuberculosis complex into the main phylogenetic lineages.	Stucki D, Malla B, Hostettler S, Huna T, Feldmann J, Yeboah-Manu D, Borrell S, Fenner L, Comas I, Coscolla M, Gagneux S.	PLoS One	10.1371/journal.pone.0041253	2012
Enzymology	Improved sensitivity of diagnosis of tuberculosis in patients in Korea via a cocktail enzyme-linked immunosorbent assay containing the abundantly expressed antigens of the K strain of Mycobacterium tuberculosis.	Shin AR, Shin SJ, Lee KS, Eom SH, Lee SS, Lee BS, Lee JS, Cho SN, Kim HJ.	Clin Vaccine Immunol	10.1128/cvi.00231-08	2008
Metabolism	The RD1 locus in the Mycobacterium tuberculosis genome contributes to activation of caspase-1 via induction of potassium ion efflux in infected macrophages.	Kurenuma T, Kawamura I, Hara H, Uchiyama R, Daim S, Dewamitta SR, Sakai S, Tsuchiya K, Nomura T, Mitsuyama M.	Infect Immun	10.1128/iai.00015-09	2009
Pathogenicity	Drug susceptibility testing of Mycobacterium tuberculosis complex by use of a high-throughput, reproducible, absolute concentration method.	van Klingeren B, Dessens-Kroon M, van der Laan T, Kremer K, van Soolingen D.	J Clin Microbiol	10.1128/jcm.00244-07	2007
Phylogeny	First insight into the population structure of Mycobacterium tuberculosis in Saudi Arabia.	Al-Hajoj SA, Zozio T, Al-Rabiah F, Mohammad V, Al-Nasser M, Sola C, Rastogi N.	J Clin Microbiol	10.1128/jcm.02293-06	2007
	The nucleotide sequence of the promoter, 16S rRNA and spacer region of the ribosomal RNA operon of Mycobacterium tuberculosis and comparison with Mycobacterium leprae precursor rRNA.	Kempsell KE, Ji YE, Estrada IC, Colston MJ, Cox RA.	J Gen Microbiol	10.1099/00221287-138-8-1717	1992
Genetics	Impact of Genomics on Clarifying the Evolutionary Relationships amongst Mycobacteria: Identification of Molecular Signatures Specific for the Tuberculosis-Complex of Bacteria with Potential Applications for Novel Diagnostics and Therapeutics.	Gupta RS.	High Throughput	10.3390/ht7040031	2018
Enzymology	Genotypic analysis of the earliest known prehistoric case of tuberculosis in Britain.	Taylor GM, Young DB, Mays SA.	J Clin Microbiol	10.1128/jcm.43.5.2236-2240.2005	2005
	Diagnostic value of animal-side antibody assays for rapid detection of Mycobacterium bovis or Mycobacterium microti infection in South American camelids.	Lyashchenko KP, Greenwald R, Esfandiari J, Rhodes S, Dean G, de la Rua-Domenech R, Meylan M, Vordermeier HM, Zanolari P.	Clin Vaccine Immunol	10.1128/cvi.05386-11	2011
	Characterization of temperate phage Che12 and construction of a new tool for diagnosis of tuberculosis.	Kumar V, Loganathan P, Sivaramakrishnan G, Kriakov J, Dusthakeer A, Subramanyam B, Chan J, Jacobs WR, Paranji Rama N.	Tuberculosis (Edinb)	10.1016/j.tube.2008.02.007	2008
Enzymology	Tuberculosis in alpacas (Lama pacos) caused by Mycobacterium bovis.	Garcia-Bocanegra I, Barranco I, Rodriguez-Gomez IM, Perez B, Gomez-Laguna J, Rodriguez S, Ruiz-Villamayor E, Perea A.	J Clin Microbiol	10.1128/jcm.02518-09	2010
Enzymology	Radiographic findings in cats with mycobacterial infections.	Bennett AD, Lalor S, Schwarz T, Gunn-Moore DA.	J Feline Med Surg	10.1016/j.jfms.2011.06.006	2011
	Guinea-pig alveolar macrophages kill Mycobacterium tuberculosis in vitro, but killing is independent of susceptibility to hydrogen peroxide or triggering of the respiratory burst.	O'Brien S, Jackett PS, Lowrie DB, Andrew PW.	Microb Pathog	10.1016/0882-4010(91)90054-e	1991
Pathogenicity	A role for systems epidemiology in tuberculosis research.	Comas I, Gagneux S.	Trends Microbiol	10.1016/j.tim.2011.07.002	2011
Metabolism	Deciphering the genetic bases of the structural diversity of phenolic glycolipids in strains of the Mycobacterium tuberculosis complex.	Malaga W, Constant P, Euphrasie D, Cataldi A, Daffe M, Reyrat JM, Guilhot C.	J Biol Chem	10.1074/jbc.m710275200	2008
	Is Mycobacterium bovis in the environment important for the persistence of bovine tuberculosis?	Courtenay O, Reilly LA, Sweeney FP, Hibberd V, Bryan S, Ul-Hassan A, Newman C, Macdonald DW, Delahay RJ, Wilson GJ, Wellington EM.	Biol Lett	10.1098/rsbl.2006.0468	2006
Pathogenicity	Genotypic diversity and drug susceptibility patterns among M. tuberculosis complex isolates from South-Western Ghana.	Yeboah-Manu D, Asante-Poku A, Bodmer T, Stucki D, Koram K, Bonsu F, Pluschke G, Gagneux S.	PLoS One	10.1371/journal.pone.0021906	2011
Metabolism	A genetic locus required for iron acquisition in Mycobacterium tuberculosis.	Krithika R, Marathe U, Saxena P, Ansari MZ, Mohanty D, Gokhale RS.	Proc Natl Acad Sci U S A	10.1073/pnas.0507924103	2006
Pathogenicity	The susceptibility of Mycobacterium tuberculosis to isoniazid and the Arg-->Leu mutation at codon 463 of katG are not associated.	van Doorn HR, Kuijper EJ, van der Ende A, Welten AG, van Soolingen D, de Haas PE, Dankert J.	J Clin Microbiol	10.1128/jcm.39.4.1591-1594.2001	2001
Metabolism	Identification of two proteins that interact with the Erp virulence factor from Mycobacterium tuberculosis by using the bacterial two-hybrid system.	Klepp LI, Soria M, Blanco FC, Bianco MV, Santangelo MP, Cataldi AA, Bigi F.	BMC Mol Biol	10.1186/1471-2199-10-3	2009
	Computed tomographic findings in cats with mycobacterial infection.	Major A, Holmes A, Warren-Smith C, Lalor S, Littler R, Schwarz T, Gunn-Moore D.	J Feline Med Surg	10.1177/1098612x15588799	2016
	Commonly administered BCG strains including an evolutionarily early strain and evolutionarily late strains of disparate genealogy induce comparable protective immunity against tuberculosis.	Horwitz MA, Harth G, Dillon BJ, Maslesa-Galic S.	Vaccine	10.1016/j.vaccine.2008.10.058	2009
Metabolism	Activity in vitro of rifabutin, FCE 22807, rifapentine, and rifampin against Mycobacterium microti and M. tuberculosis and their penetration into mouse peritoneal macrophages.	Dhillon J, Mitchison DA.	Am Rev Respir Dis	10.1164/ajrccm/145.1.212	1992
Metabolism	Comparative investigation of the pathogenicity of three Mycobacterium tuberculosis mutants defective in the synthesis of p-hydroxybenzoic acid derivatives.	Stadthagen G, Jackson M, Charles P, Boudou F, Barilone N, Huerre M, Constant P, Liav A, Bottova I, Nigou J, Brando T, Puzo G, Daffe M, Benjamin P, Coade S, Buxton RS, Tascon RE, Rae A, Robertson BD, Lowrie DB, Young DB, Gicquel B, Griffin R.	Microbes Infect	10.1016/j.micinf.2006.04.008	2006
Enzymology	Two cases of Mycobacterium microti derived tuberculosis in HIV-negative immunocompetent patients.	Niemann S, Richter E, Dalugge-Tamm H, Schlesinger H, Graupner D, Konigstein B, Gurath G, Greinert U, Rusch-Gerdes S.	Emerg Infect Dis	10.3201/eid0605.000516	2000
Enzymology	Generalized tuberculosis in llamas (Lama glama) due to Mycobacterium microti.	Oevermann A, Pfyffer GE, Zanolari P, Meylan M, Robert N.	J Clin Microbiol	10.1128/jcm.42.4.1818-1821.2004	2004
Metabolism	Role of Pre-A motif in nitric oxide scavenging by truncated hemoglobin, HbN, of Mycobacterium tuberculosis.	Lama A, Pawaria S, Bidon-Chanal A, Anand A, Gelpi JL, Arya S, Marti M, Estrin DA, Luque FJ, Dikshit KL.	J Biol Chem	10.1074/jbc.m807436200	2009
Phylogeny	Genome structure in the vole bacillus, Mycobacterium microti, a member of the Mycobacterium tuberculosis complex with a low virulence for humans.	Frota CC, Hunt DM, Buxton RS, Rickman L, Hinds J, Kremer K, van Soolingen D, Colston MJ.	Microbiology (Reading)	10.1099/mic.0.26660-0	2004
Metabolism	Mycobacteria exploit host hyaluronan for efficient extracellular replication.	Hirayama Y, Yoshimura M, Ozeki Y, Sugawara I, Udagawa T, Mizuno S, Itano N, Kimata K, Tamaru A, Ogura H, Kobayashi K, Matsumoto S.	PLoS Pathog	10.1371/journal.ppat.1000643	2009
Metabolism	The RD1 virulence locus of Mycobacterium tuberculosis regulates DNA transfer in Mycobacterium smegmatis.	Flint JL, Kowalski JC, Karnati PK, Derbyshire KM.	Proc Natl Acad Sci U S A	10.1073/pnas.0404892101	2004
	High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography.	Hershberg R, Lipatov M, Small PM, Sheffer H, Niemann S, Homolka S, Roach JC, Kremer K, Petrov DA, Feldman MW, Gagneux S.	PLoS Biol	10.1371/journal.pbio.0060311	2008
Phylogeny	Genomic interrogation of the dassie bacillus reveals it as a unique RD1 mutant within the Mycobacterium tuberculosis complex.	Mostowy S, Cousins D, Behr MA.	J Bacteriol	10.1128/jb.186.1.104-109.2003	2004
	Comparative tuberculosis (TB) prevention effectiveness in children of Bacillus Calmette-Guérin (BCG) vaccines from different sources, Kazakhstan.	Favorov M, Ali M, Tursunbayeva A, Aitmagambetova I, Kilgore P, Ismailov S, Chorba T.	PLoS One	10.1371/journal.pone.0032567	2012
	Can 15-locus mycobacterial interspersed repetitive unit-variable-number tandem repeat analysis provide insight into the evolution of Mycobacterium tuberculosis?	Gibson A, Brown T, Baker L, Drobniewski F.	Appl Environ Microbiol	10.1128/aem.71.12.8207-8213.2005	2005
	A review of bovine tuberculosis in the kafue basin ecosystem.	Munyeme M, Munang'andu HM.	Vet Med Int	10.4061/2011/918743	2011
	Practical Guidance for Clinical Microbiology Laboratories: Mycobacteria.	Forbes BA, Hall GS, Miller MB, Novak SM, Rowlinson MC, Salfinger M, Somoskovi A, Warshauer DM, Wilson ML.	Clin Microbiol Rev	10.1128/cmr.00038-17	2018
	Tuberculosis joint infections in four domestic cats.	Lalor SM, Clarke S, Pink J, Parry A, Scurrell E, Fitzpatrick N, Watson F, O'Halloran C, Gunn-Moore D.	JFMS Open Rep	10.1177/2055116917719401	2017
Phylogeny	Differentiation of Mycobacterial species by hsp65 duplex PCR followed by duplex-PCR-based restriction analysis and direct sequencing.	Kim HJ, Mun HS, Kim H, Oh EJ, Ha Y, Bai GH, Park YG, Cha CY, Kook YH, Kim BJ.	J Clin Microbiol	10.1128/jcm.01214-06	2006
	Analysis of dimycocerosates of glycosylphenolphthiocerols in the identification of some clinically significant mycobacteria.	Minnikin DE, Dobson G, Parlett JH, Goodfellow M, Magnusson M.	Eur J Clin Microbiol	10.1007/bf02013082	1987
Genetics	High-throughput method for detecting genomic-deletion polymorphisms.	Goguet de la Salmoniere YO, Kim CC, Tsolaki AG, Pym AS, Siegrist MS, Small PM.	J Clin Microbiol	10.1128/jcm.42.7.2913-2918.2004	2004
Phylogeny	Mycobacterium microti: More diverse than previously thought.	Smith NH, Crawshaw T, Parry J, Birtles RJ.	J Clin Microbiol	10.1128/jcm.00638-09	2009
Metabolism	Characterization of P55, a multidrug efflux pump in Mycobacterium bovis and Mycobacterium tuberculosis.	Silva PE, Bigi F, Santangelo MP, Romano MI, Martin C, Cataldi A, Ainsa JA.	Antimicrob Agents Chemother	10.1128/aac.45.3.800-804.2001	2001
Enzymology	The Mycobacterium tuberculosis cytochrome P450 system.	Ouellet H, Johnston JB, Ortiz de Montellano PR.	Arch Biochem Biophys	10.1016/j.abb.2009.07.011	2010
	Demonstration of increased anti-mycobacterial activity in peripheral blood monocytes after BCG vaccination in British school children.	Cheng SH, Walker L, Poole J, Aber VR, Walker KB, Mitchison DA, Lowrie DB.	Clin Exp Immunol		1988
Phylogeny	Polymorphic nucleotide within the promoter of nitrate reductase (NarGHJI) is specific for Mycobacterium tuberculosis.	Stermann M, Bohrssen A, Diephaus C, Maass S, Bange FC.	J Clin Microbiol	10.1128/jcm.41.7.3252-3259.2003	2003
Enzymology	Development of a new, combined rapid method using phage and PCR for detection and identification of viable Mycobacterium paratuberculosis bacteria within 48 hours.	Stanley EC, Mole RJ, Smith RJ, Glenn SM, Barer MR, McGowan M, Rees CE.	Appl Environ Microbiol	10.1128/aem.01722-06	2007
Pathogenicity	Dual-probe assay for rapid detection of drug-resistant Mycobacterium tuberculosis by real-time PCR.	Wada T, Maeda S, Tamaru A, Imai S, Hase A, Kobayashi K.	J Clin Microbiol	10.1128/jcm.42.11.5277-5285.2004	2004
	Foamy macrophages from tuberculous patients' granulomas constitute a nutrient-rich reservoir for M. tuberculosis persistence.	Peyron P, Vaubourgeix J, Poquet Y, Levillain F, Botanch C, Bardou F, Daffe M, Emile JF, Marchou B, Cardona PJ, de Chastellier C, Altare F.	PLoS Pathog	10.1371/journal.ppat.1000204	2008
Metabolism	Identifying putative Mycobacterium tuberculosis Rv2004c protein sequences that bind specifically to U937 macrophages and A549 epithelial cells.	Forero M, Puentes A, Cortes J, Castillo F, Vera R, Rodriguez LE, Valbuena J, Ocampo M, Curtidor H, Rosas J, Garcia J, Barrera G, Alfonso R, Patarroyo MA, Patarroyo ME.	Protein Sci	10.1110/ps.051592505	2005
	The Case for Live Attenuated Vaccines against the Neglected Zoonotic Diseases Brucellosis and Bovine Tuberculosis.	Pandey A, Cabello A, Akoolo L, Rice-Ficht A, Arenas-Gamboa A, McMurray D, Ficht TA, de Figueiredo P.	PLoS Negl Trop Dis	10.1371/journal.pntd.0004572	2016
Metabolism	Direct detection of bacterial protein secretion using whole colony proteomics.	Champion MM, Williams EA, Kennedy GM, Champion PA.	Mol Cell Proteomics	10.1074/mcp.m112.017533	2012
Pathogenicity	Molecular basis of rifampin and isoniazid resistance in Mycobacterium bovis strains isolated in Sardinia, Italy.	Sechi LA, Zanetti S, Sanguinetti M, Molicotti P, Romano L, Leori G, Delogu G, Boccia S, La Sorda M, Fadda G.	Antimicrob Agents Chemother	10.1128/aac.45.6.1645-1648.2001	2001
	Genetic heterogeneity in Mycobacterium tuberculosis isolates reflected in IS6110 restriction fragment length polymorphism patterns as low-intensity bands.	de Boer AS, Kremer K, Borgdorff MW, de Haas PE, Heersma HF, van Soolingen D.	J Clin Microbiol	10.1128/jcm.38.12.4478-4484.2000	2000
Metabolism	Macrophage activation measured by changes in 5'-nucleotidase and alkaline phosphodiesterase I activities after infection of newborn and juvenile guinea pigs with mycobacterium microti.	Bautista AP, Solomon JB.	J Leukoc Biol	10.1002/jlb.35.4.415	1984
Phylogeny	Mycobacterium microti llama-type infection presenting as pulmonary tuberculosis in a human immunodeficiency virus-positive patient.	Horstkotte MA, Sobottka I, Schewe CK, Schafer P, Laufs R, Rusch-Gerdes S, Niemann S.	J Clin Microbiol	10.1128/jcm.39.1.406-407.2001	2001
Enzymology	Detection of Mycobacterium tuberculosis group organisms in human and mouse joint tissue by reverse transcriptase PCR: prevalence in diseased synovial tissue suggests lack of specific association with rheumatoid arthritis.	Kempsell KE, Cox CJ, McColm AA, Bagshaw JA, Reece R, Veale DJ, Emery P, Isaacs JD, Gaston JS, Crowe JS.	Infect Immun	10.1128/iai.69.3.1821-1831.2001	2001
Phylogeny	A new evolutionary scenario for the Mycobacterium tuberculosis complex.	Brosch R, Gordon SV, Marmiesse M, Brodin P, Buchrieser C, Eiglmeier K, Garnier T, Gutierrez C, Hewinson G, Kremer K, Parsons LM, Pym AS, Samper S, van Soolingen D, Cole ST.	Proc Natl Acad Sci U S A	10.1073/pnas.052548299	2002
Phylogeny	Discovery of a novel Mycobacterium tuberculosis lineage that is a major cause of tuberculosis in Rio de Janeiro, Brazil.	Lazzarini LC, Huard RC, Boechat NL, Gomes HM, Oelemann MC, Kurepina N, Shashkina E, Mello FC, Gibson AL, Virginio MJ, Marsico AG, Butler WR, Kreiswirth BN, Suffys PN, Lapa E Silva JR, Ho JL.	J Clin Microbiol	10.1128/jcm.01394-07	2007
Enzymology	Cu,Zn superoxide dismutase of Mycobacterium tuberculosis contributes to survival in activated macrophages that are generating an oxidative burst.	Piddington DL, Fang FC, Laessig T, Cooper AM, Orme IM, Buchmeier NA.	Infect Immun	10.1128/iai.69.8.4980-4987.2001	2001
Enzymology	Regulation of the ahpC gene encoding alkyl hydroperoxide reductase in Mycobacterium smegmatis.	Lee HN, Lee NO, Han SJ, Ko IJ, Oh JI.	PLoS One	10.1371/journal.pone.0111680	2014
	Studies on the mycolic acids from the walls of Mycobacterium microti.	Davidson LA, Draper P, Minnikin DE.	J Gen Microbiol	10.1099/00221287-128-4-823	1982
Enzymology	Use of polymerase chain reaction for early identification of Mycobacterium tuberculosis in positive cultures.	Cormican MG, Barry T, Gannon F, Flynn J.	J Clin Pathol	10.1136/jcp.45.7.601	1992
Phylogeny	Distinct genotypic profiles of the two major clades of Mycobacterium africanum.	Vasconcellos SE, Huard RC, Niemann S, Kremer K, Santos AR, Suffys PN, Ho JL.	BMC Infect Dis	10.1186/1471-2334-10-80	2010
	Monocyte antimycobacterial activity before and after Mycobacterium bovis BCG vaccination in Chingleput, India, and London, United Kingdom.	Cheng SH, Walker KB, Lowrie DB, Mitchison DA, Swamy R, Datta M, Prabhakar R.	Infect Immun	10.1128/iai.61.10.4501-4503.1993	1993
Phylogeny	Assessment of genetic markers for species differentiation within the Mycobacterium tuberculosis complex.	Liebana E, Aranaz A, Francis B, Cousins D.	J Clin Microbiol	10.1128/jcm.34.4.933-938.1996	1996
	Bovine tuberculosis (Mycobacterium bovis) in British farmland wildlife: the importance to agriculture.	Mathews F, Macdonald DW, Taylor GM, Gelling M, Norman RA, Honess PE, Foster R, Gower CM, Varley S, Harris A, Palmer S, Hewinson G, Webster JP.	Proc Biol Sci	10.1098/rspb.2005.3298	2006
	A new vaccine against tuberculosis affords greater survival after challenge than the current vaccine in the guinea pig model of pulmonary tuberculosis.	Horwitz MA, Harth G.	Infect Immun	10.1128/iai.71.4.1672-1679.2003	2003
	Nitroimidazoles for the treatment of TB: past, present and future.	Mukherjee T, Boshoff H.	Future Med Chem	10.4155/fmc.11.90	2011
Phylogeny	Epidemiology of tuberculosis in Hamburg, Germany: long-term population-based analysis applying classical and molecular epidemiological techniques.	Diel R, Schneider S, Meywald-Walter K, Ruf CM, Rusch-Gerdes S, Niemann S.	J Clin Microbiol	10.1128/jcm.40.2.532-539.2002	2002
	Analysis of genetic polymorphism in the phospholipase region of Mycobacterium tuberculosis.	Vera-Cabrera L, Howard ST, Laszlo A, Johnson WM.	J Clin Microbiol	10.1128/jcm.35.5.1190-1195.1997	1997
	A 38-kilobase pathogenicity island specific for Mycobacterium avium subsp. paratuberculosis encodes cell surface proteins expressed in the host.	Stratmann J, Strommenger B, Goethe R, Dohmann K, Gerlach GF, Stevenson K, Li LL, Zhang Q, Kapur V, Bull TJ.	Infect Immun	10.1128/iai.72.3.1265-1274.2004	2004
	A second-generation anti TB vaccine is long overdue.	Castanon-Arreola M, Lopez-Vidal Y.	Ann Clin Microbiol Antimicrob	10.1186/1476-0711-3-10	2004
Enzymology	Variable-number tandem repeat typing of Mycobacterium tuberculosis isolates with low copy numbers of IS6110 by using mycobacterial interspersed repetitive units.	Cowan LS, Mosher L, Diem L, Massey JP, Crawford JT.	J Clin Microbiol	10.1128/jcm.40.5.1592-1602.2002	2002
Phylogeny	Novel genetic polymorphisms that further delineate the phylogeny of the Mycobacterium tuberculosis complex.	Huard RC, Fabre M, de Haas P, Lazzarini LC, van Soolingen D, Cousins D, Ho JL.	J Bacteriol	10.1128/jb.01783-05	2006
Metabolism	Cyclic AMP in mycobacteria: characterization and functional role of the Rv1647 ortholog in Mycobacterium smegmatis.	Dass BK, Sharma R, Shenoy AR, Mattoo R, Visweswariah SS.	J Bacteriol	10.1128/jb.00138-08	2008
	Generation of attenuated Mycobacterium bovis strains by signature-tagged mutagenesis for discovery of novel vaccine candidates.	Collins DM, Skou B, White S, Bassett S, Collins L, For R, Hurr K, Hotter G, de Lisle GW.	Infect Immun	10.1128/iai.73.4.2379-2386.2005	2005
Phylogeny	Automated high-throughput genotyping for study of global epidemiology of Mycobacterium tuberculosis based on mycobacterial interspersed repetitive units.	Supply P, Lesjean S, Savine E, Kremer K, van Soolingen D, Locht C.	J Clin Microbiol	10.1128/jcm.39.10.3563-3571.2001	2001
	Amplification of a species-specific DNA fragment of Mycobacterium tuberculosis and its possible use in diagnosis.	Del Portillo P, Murillo LA, Patarroyo ME.	J Clin Microbiol	10.1128/jcm.29.10.2163-2168.1991	1991
	Immunologically reactive M. leprae antigens with relevance to diagnosis and vaccine development.	Sampaio LH, Stefani MM, Oliveira RM, Sousa AL, Ireton GC, Reed SG, Duthie MS.	BMC Infect Dis	10.1186/1471-2334-11-26	2011
	Phagosome-lysosome fusion and cyclic adenosine 3':5'-monophosphate in macrophages infected with Mycobacterium microti, Mycobacterium bovis BCG or Mycobacterium lepraemurium.	Lowrie DB, Aber VR, Jackett PS.	J Gen Microbiol	10.1099/00221287-110-2-431	1979
	Bactericidal activity in whole blood as a potential surrogate marker of immunity after vaccination against tuberculosis.	Cheon SH, Kampmann B, Hise AG, Phillips M, Song HY, Landen K, Li Q, Larkin R, Ellner JJ, Silver RF, Hoft DF, Wallis RS.	Clin Diagn Lab Immunol	10.1128/cdli.9.4.901-907.2002	2002
Metabolism	Stimulation or inhibition of the respiratory burst in cultured macrophages in a mycobacterium model: initial stimulation is followed by inhibition after phagocytosis.	Gordon AH, Hart PD.	Infect Immun	10.1128/iai.62.10.4650-4651.1994	1994
Metabolism	Polar localization of virulence-related Esx-1 secretion in mycobacteria.	Carlsson F, Joshi SA, Rangell L, Brown EJ.	PLoS Pathog	10.1371/journal.ppat.1000285	2009
Metabolism	Mechanism and regulation of mycobactin fatty acyl-AMP ligase FadD33.	Vergnolle O, Xu H, Blanchard JS.	J Biol Chem	10.1074/jbc.m113.495549	2013
Enzymology	African 1, an epidemiologically important clonal complex of Mycobacterium bovis dominant in Mali, Nigeria, Cameroon, and Chad.	Muller B, Hilty M, Berg S, Garcia-Pelayo MC, Dale J, Boschiroli ML, Cadmus S, Ngandolo BN, Godreuil S, Diguimbaye-Djaibe C, Kazwala R, Bonfoh B, Njanpop-Lafourcade BM, Sahraoui N, Guetarni D, Aseffa A, Mekonnen MH, Razanamparany VR, Ramarokoto H, Djonne B, Oloya J, Machado A, Mucavele C, Skjerve E, Portaels F, Rigouts L, Michel A, Muller A, Kallenius G, van Helden PD, Hewinson RG, Zinsstag J, Gordon SV, Smith NH.	J Bacteriol	10.1128/jb.01590-08	2009
	Characterization of a Mycobacterium tuberculosis insertion sequence, IS6110, and its application in diagnosis.	Thierry D, Brisson-Noel A, Vincent-Levy-Frebault V, Nguyen S, Guesdon JL, Gicquel B.	J Clin Microbiol	10.1128/jcm.28.12.2668-2673.1990	1990
Phylogeny	Differentiation of phylogenetically related slowly growing mycobacteria by their gyrB sequences.	Kasai H, Ezaki T, Harayama S.	J Clin Microbiol	10.1128/jcm.38.1.301-308.2000	2000
	Evaluation of gamma interferon and antibody tuberculosis tests in alpacas.	Rhodes S, Holder T, Clifford D, Dexter I, Brewer J, Smith N, Waring L, Crawshaw T, Gillgan S, Lyashchenko K, Lawrence J, Clarke J, de la Rua-Domenech R, Vordermeier M.	Clin Vaccine Immunol	10.1128/cvi.00405-12	2012
Phylogeny	Mycobacterium microti infection (vole tuberculosis) in wild rodent populations.	Cavanagh R, Begon M, Bennett M, Ergon T, Graham IM, De Haas PE, Hart CA, Koedam M, Kremer K, Lambin X, Roholl P, Soolingen Dv Dv.	J Clin Microbiol	10.1128/jcm.40.9.3281-3285.2002	2002
Enzymology	Diagnosis of tuberculosis in the wild boar (Sus scrofa): a comparison of methods applicable to hunter-harvested animals.	Santos N, Geraldes M, Afonso A, Almeida V, Correia-Neves M.	PLoS One	10.1371/journal.pone.0012663	2010
	DNA restriction endonuclease analysis of Mycobacterium bovis and other members of the tuberculosis complex.	Collins DM, De Lisle GW.	J Clin Microbiol	10.1128/jcm.21.4.562-564.1985	1985
	Comparative phylogenomics of pathogenic bacteria by microarray analysis.	Dorrell N, Hinchliffe SJ, Wren BW.	Curr Opin Microbiol	10.1016/j.mib.2005.08.012	2005
Enzymology	Tuberculosis (Mycobacterium microti) in wild field vole populations.	Burthe S, Bennett M, Kipar A, Lambin X, Smith A, Telfer S, Begon M.	Parasitology	10.1017/s0031182007003940	2008
Enzymology	Mycobacterial disease in cats in Great Britain: I. Culture results, geographical distribution and clinical presentation of 339 cases.	Gunn-Moore DA, McFarland SE, Brewer JI, Crawshaw TR, Clifton-Hadley RS, Kovalik M, Shaw DJ.	J Feline Med Surg	10.1016/j.jfms.2011.07.012	2011
Genetics	Non mycobacterial virulence genes in the genome of the emerging pathogen Mycobacterium abscessus.	Ripoll F, Pasek S, Schenowitz C, Dossat C, Barbe V, Rottman M, Macheras E, Heym B, Herrmann JL, Daffe M, Brosch R, Risler JL, Gaillard JL.	PLoS One	10.1371/journal.pone.0005660	2009
Enzymology	Mycobacterium microti (vole bacillus): a method for viable counts within 21 days of culture.	Sharp K.	Appl Microbiol	10.1128/am.25.6.1023-1024.1973	1973
	Bovine tuberculosis and the establishment of an eradication program in the United States: role of veterinarians.	Palmer MV, Waters WR.	Vet Med Int	10.4061/2011/816345	2011
Enzymology	Isolation of specific DNA fragments of Mycobacterium avium and their possible use in diagnosis.	Thierry D, Vincent V, Clement F, Guesdon JL.	J Clin Microbiol	10.1128/jcm.31.5.1048-1054.1993	1993
	Parasite interactions in natural populations: insights from longitudinal data.	Telfer S, Birtles R, Bennett M, Lambin X, Paterson S, Begon M.	Parasitology	10.1017/s0031182008000395	2008
	Inhibition of phagosome-lysosome fusion in macrophages by certain mycobacteria can be explained by inhibition of lysosomal movements observed after phagocytosis.	Hart PD, Young MR, Gordon AH, Sullivan KH.	J Exp Med	10.1084/jem.166.4.933	1987
	Virulence factors of the Mycobacterium tuberculosis complex.	Forrellad MA, Klepp LI, Gioffre A, Sabio y Garcia J, Morbidoni HR, de la Paz Santangelo M, Cataldi AA, Bigi F.	Virulence	10.4161/viru.22329	2013
Enzymology	Phospholipase activity of Mycobacterium leprae harvested from experimentally infected armadillo tissue.	Wheeler PR, Ratledge C.	Infect Immun	10.1128/iai.59.8.2781-2789.1991	1991
Pathogenicity	Ammonium chloride, an inhibitor of phagosome-lysosome fusion in macrophages, concurrently induces phagosome-endosome fusion, and opens a novel pathway: studies of a pathogenic mycobacterium and a nonpathogenic yeast.	Hart PD, Young MR.	J Exp Med	10.1084/jem.174.4.881	1991
	Effects of recombinant interferon-gamma and chemotherapy with isoniazid and rifampicin on infections of mouse peritoneal macrophages with Listeria monocytogenes and Mycobacterium microti in vitro.	Khor M, Lowrie DB, Mitchison DA.	Br J Exp Pathol		1986
	Studies with the light microscope and electron microscope of lung macrophages in rabbits inoculated with an attenuated stain of Mycobacterium microti.	Sula L, Konradova V.	Bull World Health Organ		1970
Proteome	Accurate Identification of Closely Related Mycobacterium tuberculosis Complex Species by High Resolution Tandem Mass Spectrometry.	Bajaj AO, Saraswat S, Knuuttila JEA, Freeke J, Stielow JB, Barker AP	Front Cell Infect Microbiol	10.3389/fcimb.2021.656880	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#34898	Collection of Institut Pasteur ; Curators of the CIP; CIP 104256
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Mycobacterium tuberculosis (CIP 104256, ATCC 19422, CCUG 21046)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002982215

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media