Pseudomonas mendocina (CIP 75.19, ATCC 25412, LMG 5941)

Name: Pseudomonas mendocina (CIP 75.19, ATCC 25412, LMG 5941)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 135691

Type strain

Strain Designation CH 20

Culture col. no. CIP 75.19 ATCC 25412 LMG 5941 NCTC 10898 NCIMB 10542 1 more

NCBI tax ID(s) 300

Special Collections CIP

History CIP <- 1975, F. Pichinoty, CNRS, Marseille, France <- R.E. Solanes, Mendoza, Argentina: strain CH 20

Links

Pseudomonas mendocina CH 20 is an obligate aerobe, mesophilic, Gram-negative prokaryote that was isolated from Environment, Water enrichment with succinate as carbon source.

Gram-negative motile rod-shaped obligate aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 4160

LMG 5941,ATCC 25412,CCUG 12438,CCUG 5916,NCIB 10542,NCTC 10898,NCIMB 10542,CIP 75.19

@ref 20215

Last LPSN update 2026-02-09 11:32:29

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas mendocina

Full scientific name Pseudomonas mendocina Palleroni 1970 (Approved Lists 1980)

Synonyms (1)

Ectopseudomonas mendocina

BacDive ID	Other strains from **Pseudomonas mendocina** (14)	Type strain
12866	P. mendocina CH50, CH 50, DSM 50017, ATCC 25411, CCUG ... (type strain)
100175	P. mendocina STI09280(IMET), LA97, IFO 14913, IMET 9280, ...
131876	P. mendocina S5.2, DSM 102033
134841	P. mendocina CH 67, CIP 75.22
135447	P. mendocina CIP 100027
138954	P. mendocina CH 35, CIP 75.20
142349	P. mendocina CCUG 11978
146158	P. mendocina CCUG 30480
146261	P. mendocina CCUG 30728
147011	P. mendocina CCUG 32641
148054	P. mendocina CCUG 34738
150188	P. mendocina CCUG 39226
166063	P. mendocina JCM 9792
166065	P. mendocina JCM 9794

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125438			92.054
125438	negative		99.5
125439	negative		99.7
125439			93
34871	negative	rod-shaped

Pigmentation

@ref	Production	Name
34871		Pyocyanin

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
34871	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
34871	CIP Medium 3			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
34871	positive	growth	30	mesophilic
34871	positive	growth	30-45
34871	negative	growth	5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
34871	obligate aerobe
125438	aerobe	92.457

Spore formation

@ref	Spore formation	Confidence
125439		99.2

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
34871	16947 ChEBI	citrate	+	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
34871	4853 ChEBI	esculin	-	hydrolysis
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	+	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
34871	17632 ChEBI	nitrate	+	reduction
34871	17632 ChEBI	nitrate	+	respiration
34871	16301 ChEBI	nitrite	+	reduction
34871	15882 ChEBI	phenol	-	degradation
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Enzymes

@ref	Value	Activity	Ec
34871	alcohol dehydrogenase	+	1.1.1.1
34871	amylase	-
34871	beta-galactosidase	-	3.2.1.23
34871	caseinase	-	3.4.21.50
34871	catalase	+	1.11.1.6
34871	gelatinase	-
34871	lecithinase	+
34871	lysine decarboxylase	-	4.1.1.18
34871	ornithine decarboxylase	-	4.1.1.17
34871	oxidase	+
34871	tween esterase	+

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
34871	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation

34871

Sample typeEnvironment, Water enrichment with succinate as carbon source

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
34871	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	43781_A01 assembly for Ectopseudomonas mendocina NCTC10898	contig	GCA_900455585	300.56	8035492398	300	71.93

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Pseudomonas mendocina strain ATCC 25412 16S-23S ribosomal RNA intergenic spacer, complete sequence.	EU014571	513		300

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudomonas mendocina NCTC10898
NCBI: GCA_900455585

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.20	no
125439	motility	BacteriaNetⓘ	yes	93.00	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	89.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas mendocina strain NCTC10898
PATRIC: 300.56

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	98.34	no
125438	spore-forming	spore-formingⓘ	no	86.88	no
125438	thermophilic	thermophileⓘ	no	99.99	no
125438	aerobic	aerobicⓘ	yes	92.46	yes
125438	flagellated	motile2+ⓘ	yes	92.05	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Identification of Gram-negative non-fermenters and oxidase-positive fermenters by the Oxi/Ferm tube.	Holmes B, Dowling J, Lapage SP.	J Clin Pathol	10.1136/jcp.32.1.78	1979

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#34871	Collection of Institut Pasteur ; Curators of the CIP; CIP 75.19
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68371	Automatically annotated from API 50CH acid .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas mendocina (CIP 75.19, ATCC 25412, LMG 5941)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Enzymes

API 50CHac

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900455585

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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