Kaistia adipata (DSM 17808, IAM 15023, JCM 21486)

Name: Kaistia adipata (DSM 17808, IAM 15023, JCM 21486)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13563

Type strain

Strain Designation CHj 404

Culture col. no. DSM 17808 IAM 15023 JCM 21486 KCTC 12095 CHj 404 1 more

NCBI tax ID(s) 1122131 166954

Special Collections DSMZ JCM KCTC CIP

Links

Kaistia adipata CHj 404 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from soil .

Gram-negative aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 107095

KCTC 12095,IAM 15023,DSM 17808,JCM 21486,CIP 108816

@ref 20215

Last LPSN update 2025-12-16 09:50:07

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Kaistiaceae

Genus Kaistia

Species Kaistia adipata

Full scientific name Kaistia adipata Im et al. 2005

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
67771	negative
116045	negative	coccus-shaped
125438	negative		98.333
125439	negative		97.6

Colony morphology

116045

Hemolysis ability1

Pigmentation

@ref	Production	Name
116045		Flexirubin

Multimedia

@ref:	66793
multimedia content:	EM_DSM_17808_1.jpg
multimedia.multimedia content:	EM_DSM_17808_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_17808_2.jpg
multimedia.multimedia content:	EM_DSM_17808_2.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_17808_3.jpg
multimedia.multimedia content:	EM_DSM_17808_3.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_17808_4.jpg
multimedia.multimedia content:	EM_DSM_17808_4.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_17808_5.jpg
multimedia.multimedia content:	EM_DSM_17808_5.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7199	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
33991	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116045	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7199	positive	growth	28	mesophilic
33991	positive	growth	37	mesophilic
67771	positive	growth	30-37	mesophilic
116045	positive	growth	15-37
116045	negative	growth	5
116045	negative	growth	41
116045	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67771	aerobe
116045	obligate aerobe
125439	obligate aerobe	94

Spore formation

@ref	Spore formation	Confidence
125439		97.3

Halophily

@ref	Salt	Growth	Tested relation	Concentration
116045	NaCl	positive	growth	0-10 %

Observation

67771

Observationquinones: Q-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
116045	16947 ChEBI	citrate	-	carbon source
116045	4853 ChEBI	esculin	+	hydrolysis
116045	17234 ChEBI	glucose	+	degradation
116045	606565 ChEBI	hippurate	+	hydrolysis
116045	15792 ChEBI	malonate	-	assimilation
116045	17632 ChEBI	nitrate	-	builds gas from
116045	17632 ChEBI	nitrate	+	reduction
116045	16301 ChEBI	nitrite	-	builds gas from
116045	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
116045	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
116045	15688 ChEBI	acetoin	-
116045	17234 ChEBI	glucose		+

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
116045	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
116045	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
116045	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116045	caseinase	-	3.4.21.50
116045	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
116045	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
116045	gamma-glutamyltransferase	-	2.3.2.2
116045	gelatinase	+/-
116045	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
116045	lipase	+
68382	lipase (C 14)	-		from API zym
116045	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116045	ornithine decarboxylase	-	4.1.1.17
116045	oxidase	-
116045	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	-	3.4.21.4	from API zym
116045	tryptophan deaminase	-
116045	tween esterase	-
116045	urease	+	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116045	-	+	+	-	-	+	+	-	-	-	+	+	-	-	-	+	+	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Sediment
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7199	soil (sediment)	near the Chung-Ju industrial complex	Republic of Korea	KOR	Asia
67771	From soil		Republic of Korea	KOR	Asia
116045	Environment, Soil sample collected in an industrial stream	Near the Chung-Ju industrial complex	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AY039817 (>99% sequence identity) for Kaistia from Microbeatlas

Aquatic Samples	67
Soil Samples	137
Animal Samples	74
Plant Samples	44
Total Samples	322

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7199	1	Risk group (German classification) According to TRBA 466
116045	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM42322v1 assembly for Kaistia adipata DSM 17808	scaffold	GCA_000423225	1122131.7	2524614770	1122131	75.18

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7199	Kaistia adipata 16S ribosomal RNA gene, complete sequence	AY039817	1413		166954

GC content

7199

GC-content (mol%)67.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Kaistia adipata DSM 17808
NCBI: GCA_000423225

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.30	no
125439	motility	BacteriaNetⓘ	yes	79.30	no
125439	gram_stain	BacteriaNetⓘ	negative	97.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Kaistia adipata DSM 17808 DSM 17808
NCBI: GCA_000423225.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.33	yes
125438	anaerobic	anaerobicⓘ	no	97.90	yes
125438	aerobic	aerobicⓘ	yes	83.58	yes
125438	spore-forming	spore-formingⓘ	no	85.64	no
125438	thermophilic	thermophileⓘ	no	98.56	yes
125438	flagellated	motile2+ⓘ	no	75.07	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Refining the taxonomy of the order Hyphomicrobiales (Rhizobiales) based on whole genome comparisons of over 130 type strains.	diCenzo GC, Yang Y, Young JPW, Kuzmanovic N.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006328	2024
	Complete Genome Sequence of the Plant Growth-Promoting Bacterium Hartmannibacter diazotrophicus Strain E19^T.	Suarez C, Ratering S, Hain T, Fritzenwanker M, Goesmann A, Blom J, Chakraborty T, Bunk B, Sproer C, Overmann J, Schnell S.	Int J Genomics	10.1155/2019/7586430	2019
Phylogeny	Kaistia defluvii sp. nov., isolated from river sediment.	Jin L, Kim KK, Lee HG, Ahn CY, Oh HM	Int J Syst Evol Microbiol	10.1099/ijs.0.038687-0	2012
Phylogeny	Kaistia geumhonensis sp. nov. and Kaistia dalseonensis sp. nov., two members of the class Alphaproteobacteria.	Jin L, Kim KK, Baek SH, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.028894-0	2010
Phylogeny	Kaistia adipata gen. nov., sp. nov., a novel alpha-proteobacterium.	Im WT, Yokota A, Kim MK, Lee ST	J Gen Appl Microbiol	10.2323/jgam.50.249	2004

References

#7199	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17808
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#33991	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116045	Collection of Institut Pasteur ; Curators of the CIP; CIP 108816
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Kaistia adipata (DSM 17808, IAM 15023, JCM 21486)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000423225

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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