Name: Ensifer kostiensis DSM 13372
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13553

Type strain:

Species: Ensifer kostiensis

Culture col. no.: DSM 13372, HAMBI 1489, LMG 15613, TTR 15

Strain history: <- K. Lindström, HAMBI <- X. Zhang; TTR 15

NCBI tax ID(s): 76747 (species)

SI-ID 13018

LMG 15613, HAMBI 1489, LMG 19227, DSM 13372, NCIMB 13656, ATCC BAA-227, NBRC 100382, KACC 10756

Other strains from Ensifer kostiensis

E. kostiensis 34, DSM 13373, HAMBI 1501
E. kostiensis DSM 13374, HAMBI 1679, TTR 1

Section

Ensifer kostiensis DSM 13372 is a mesophilic, motile bacterium that was isolated from root nodules of Acacia senegal.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Ensifer*
	Species	**Ensifer kostiensis**
	Full Scientific Name (LPSN)	Ensifer kostiensis (Nick et al. 1999) Young 2003

Synonym

Sinorhizobium kostiense

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.969

[Ref.: #69480]	Motility	yes Confidence in %93.046

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5011]

Culture medium

RHIZOBIUM MEDIUM (DSMZ Medium 98)

[Ref.: #5011]

Culture medium growth

[Ref.: #5011]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5011]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5011]			growth	30 °C

[Ref.: #5011]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.993

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	+	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	+	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #5011]	24922	-	-	-	-	+	+	-	+	+	+	+/-	+	+	+	+	-	-	+	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5011]	Sample type/isolated from	root nodules of Acacia senegal
[Ref.: #5011]	Host species	Acacia senegal
[Ref.: #5011]	Geographic location (country and/or sea, region)	Kosti
[Ref.: #5011]	Country	Sudan
[Ref.: #5011]	Country ISO 3 Code	SDN
[Ref.: #5011]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM181747 (>99% sequence identity) for Rhizobiaceae from Microbeatlas

Aquatic Samples	1562
Soil Samples	5353
Animal Samples	1094
Plant Samples	1478
Total Samples	9487

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5011]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5011]	Sinorhizobium kostiense partial 16S rRNA gene, strain LMG 19225	AM181747	1426	ENA	76747 tax ID
[Ref.: #20218]	Sinorhizobium sp. 16S rRNA gene, strain HAMBI 1489	Z78203	1437	ENA	42445 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sinorhizobium kostiense DSM 13372	GCA_017874595	contig	GenBank	76747 tax ID	*
[Ref.: #66792]	Sinorhizobium kostiense strain DSM 13372	76747.3	wgs	PATRIC	76747 tax ID	*
[Ref.: #66792]	Sinorhizobium kostiensis DSM 13372	2913295892	draft	JGI IMG/M	76747 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sinorhizobium kostiense strain DSM 13372 PATRIC: 76747.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sinorhizobium kostiense strain DSM 13372 PATRIC: 76747.3
[Ref.: #69480]	motile	yes	87.634	no
[Ref.: #69480]	flagellated	no	82.966	no
[Ref.: #69480]	gram-positive	no	97.976	no
[Ref.: #69480]	anaerobic	no	98.86	no
[Ref.: #69480]	halophile	no	89.052	no
[Ref.: #69480]	spore-forming	no	94.659	no
[Ref.: #69480]	glucose-util	yes	92.649	yes
[Ref.: #69480]	aerobic	yes	92.648	no
[Ref.: #69480]	thermophile	no	98.868	no
[Ref.: #69480]	glucose-ferment	no	90.276	no

Availability in culture collections External links

[Ref.: #5011]

Culture collection no.

DSM 13372, HAMBI 1489, LMG 15613, TTR 15

[Ref.: #82742]

SI-ID 13018

References

#5011

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13372

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82742

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13018.1 )

* These data were automatically processed and therefore are not curated

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Sinorhizobium kostiense strain DSM 13372

Sinorhizobium kostiense strain DSM 13372

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