Tistrella mobilis (CIP 108080, IAM 14872, TISTR 1108)

Name: Tistrella mobilis (CIP 108080, IAM 14872, TISTR 1108)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 135528

Type strain

Culture col. no. CIP 108080 IAM 14872 TISTR 1108 NBRC 102134 CGMCC 1.7686 1 more

NCBI tax ID(s) 171437

Special Collections JCM CIP

History JCM <-- IAM 14872 <-- TISTR 1108. CIP <- 2003, IAM <- Vullapa Arunpairojana: strain TISTR 1108

Links

Tistrella mobilis CIP 108080 is a Gram-negative, motile, rod-shaped bacterium of the family Geminicoccaceae.

Gram-negative motile rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 126083

IAM 14872,TISTR 1108,CIP 108080,NBRC 102134,JCM 21370

@ref 20215

Last LPSN update 2026-05-29 08:38:35

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Geminicoccaceae

Genus Tistrella

Species Tistrella mobilis

Full scientific name Tistrella mobilis Shi et al. 2003

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
34675	negative	rod-shaped
125439	negative			92.483

Culture and growth conditions

Culture medium

@ref	Name	Composition	Medium link
34675	MEDIUM 72- for trypto casein soja agar	Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
34675	CIP Medium 328		Medium recipe at CIP
34675	CIP Medium 72		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
34675	positive	growth	30
34675	positive	growth	25-37
34675	negative	growth	5
34675	negative	growth	10
34675	negative	growth	41
67770	positive	growth	27

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		98.452

Halophily

@ref	Salt	Growth	Tested relation	Concentration
34675	NaCl	positive	growth	0-6 %
34675	NaCl		growth	8 %
34675	NaCl		growth	10 %

Observation

67770

Observationquinones: Q-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
34675	16947 ChEBI	citrate	-	carbon source
34675	4853 ChEBI	esculin	-	hydrolysis
34675	17632 ChEBI	nitrate	-	reduction
34675	17632 ChEBI	nitrate	-	respiration
34675	16301 ChEBI	nitrite	-	reduction

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
34675	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
34675	35581 ChEBI	indole
67770	78037 ChEBI	polyhydroxyalkanoate

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
34675	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
34675	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
34675	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
34675	caseinase	-	3.4.21.50
34675	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
34675	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
34675	gelatinase	-
34675	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
34675	lipase	-
68382	lipase (C 14)	-		from API zym
34675	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
34675	ornithine decarboxylase	-	4.1.1.17
34675	oxidase	+
34675	protease	-
68382	trypsin	-	3.4.21.4	from API zym
34675	tryptophan deaminase	-
34675	tween esterase	-
34675	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
34675	-	+	+	+	-	+	-	+	-	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
34675		Thailand	THA	Asia
67770	Wastewater	Thailand	THA	Asia
34675	Environment, Wastewater	Thailand	THA	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB071665 (>99% sequence identity) for Tistrella mobilis subclade from Microbeatlas

Aquatic Samples	4475
Soil Samples	866
Animal Samples	944
Plant Samples	153
Total Samples	6438

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
34675	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3963478v1 assembly for Tistrella mobilis IAM 14872	contig	GCA_039634785	171437	65.57
124043	ASM4268524v1 assembly for Tistrella mobilis TISTR 1108	scaffold	GCA_042685245	171437	49.77

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Tistrella mobilis gene for 16S ribosomal RNA, partial sequence	AB071665	1453		171437
124043	Tistrella mobilis gene for 16S rRNA, partial sequence, strain: NBRC 102134.	AB681708	1427		171437

GC content

@ref	GC-content (mol%)	Method
67770	67.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3963478v1 assembly for Tistrella mobilis IAM 14872
NCBI: GCA_039634785

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	89.58	no
125439	motility	BacteriaNetⓘ	yes	58.81	no
125439	gram_stain	BacteriaNetⓘ	negative	92.48	no
125439	spore_formation	BacteriaNetⓘ	no	98.45	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	First Record of Microbiomes of Sponges Collected From the Persian Gulf, Using Tag Pyrosequencing.	Najafi A, Moradinasab M, Nabipour I.	Front Microbiol	10.3389/fmicb.2018.01500	2018
Phylogeny	[Predominant strains of polycyclic aromatic hydrocarbon-degrading consortia from deep sea of the Middle Atlantic Ridge].	Cui Z, Shao Z	Wei Sheng Wu Xue Bao		2009
Phylogeny	Tistrella mobilis gen nov, sp nov, a novel polyhydroxyalkanoate-producing bacterium belonging to alpha-Proteobacteria.	Shi BH, Arunpairojana V, Palakawong S, Yokota A	J Gen Appl Microbiol	10.2323/jgam.48.335	2002

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#34675	Collection of Institut Pasteur ; Curators of the CIP; CIP 108080
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Tistrella mobilis (CIP 108080, IAM 14872, TISTR 1108)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039634785

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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