Name: Ensifer fredii R x 42
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13549

Type strain:

Species: Ensifer fredii

Strain Designation: R x 42

Culture col. no.: DSM 5852, ATCC 49357, CCBAU 110, IAM 14142, JCM 21035, HAMBI 1673, ICMP 11141, LMG 17930, NBRC 100018, NCIMB 13266

Strain history: IAM 14142 <-- CCBAU 110 <-- W. X. Chen RX42.

NCBI tax ID(s): 28106 (species)

SI-ID 10545

LMG 17930, ATCC 49357, DSM 5852, IAM 14142, NCIMB 13266, CECT 4657, HAMBI 1673, ICMP 11141, NBRC 100018, KACC 10755, JCM 21035

Other strains from Ensifer fredii

E. fredii DSM 5851, ATCC 35423, LMG 6217, ... (type strain)
E. fredii DSM 5924, USDA 194
E. fredii JCM 20968, IAM 13626, LMG 6219, ...
E. fredii JCM 20969, IAM 13627, LMG 6216, ...

Section

Ensifer fredii R x 42 is a mesophilic bacterium that was isolated from soybean nodule.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Ensifer*
	Species	**Ensifer fredii**
	Full Scientific Name (LPSN)	Ensifer fredii (Scholla and Elkan 1984) Young 2003

	Synonym	Ensifer xinjiangensis
	Synonym	Sinorhizobium xinjiangense
	Synonym	Sinorhizobium xinjiangensis
	Synonym	Sinorhizobium fredii
	Synonym	Rhizobium fredii

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2340]

Culture medium

RHIZOBIUM MEDIUM (DSMZ Medium 98)

[Ref.: #2340]

Culture medium growth

[Ref.: #2340]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2340]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2340]			growth	28 °C
[Ref.: #67770]			growth	25 °C

[Ref.: #2340]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2340]	Sample type/isolated from	soybean nodule
[Ref.: #2340]	Geographic location (country and/or sea, region)	Xinjiang
[Ref.: #2340]	Country	China
[Ref.: #2340]	Country ISO 3 Code	CHN
[Ref.: #2340]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soybean (Glycine max)
[Ref.: #67770]	Host species	Glycine max
[Ref.: #67770]	Geographic location (country and/or sea, region)	Xinjiang
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM181732 (>99% sequence identity) for Rhizobiaceae from Microbeatlas

Aquatic Samples	1562
Soil Samples	5353
Animal Samples	1094
Plant Samples	1478
Total Samples	9487

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2340]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sinorhizobium xinjiangense partial 16S rRNA gene, strain LMG 17930	AM181732	1426	ENA	28106 tax ID
[Ref.: #20218]	Sinorhizobium xinjiangense strain CCBAU 110 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU152397	1169	ENA	28106 tax ID	*
[Ref.: #20218]	Sinorhizobium xinjiangensis strain CCBAU110 16S ribosomal RNA gene, partial sequence	AF250354	1401	ENA	28106 tax ID	*
[Ref.: #20218]	Sinorhizobium xinjiangense gene for 16S rRNA, strain: IAM 14142	D12796	1438	ENA	28106 tax ID	*
[Ref.: #20218]	Sinorhizobium xinjiangense strain CCBAU 110 16S-23S ribosomal RNA intergenic spacer region	AF284450	1162	ENA	28106 tax ID	*

Availability in culture collections External links

[Ref.: #2340]

Culture collection no.

DSM 5852, ATCC 49357, CCBAU 110, IAM 14142, JCM 21035, HAMBI 1673, ICMP 11141, LMG 17930, NBRC 100018, NCIMB 13266

[Ref.: #82738]

SI-ID 10545

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	NolR regulates diverse symbiotic signals of Sinorhizobium fredii HH103.	Vinardell JM, Ollero FJ, Hidalgo A, Lopez-Baena FJ, Medina C, Ivanov-Vangelov K, Parada M, Madinabeitia N, Espuny Mdel R, Bellogin RA, Camacho M, Rodriguez-Navarro DN, Soria-Diaz ME, Gil-Serrano AM, Ruiz-Sainz JE	Mol Plant Microbe Interact	10.1094/MPMI.2004.17.6.676	2004	*

References

#2340

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5852

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#82738

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID10545.1 )

* These data were automatically processed and therefore are not curated

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