[Ref.: #2339] |
Sample type/isolated from |
soybean nodules |
|
[Ref.: #48991] |
Sample type/isolated from |
Soy bean,Glycine max,root nodule |
[Ref.: #48991] |
Geographic location (country and/or sea, region) |
Honan |
[Ref.: #48991] |
Country |
China |
[Ref.: #48991] |
Country ISO 3 Code |
CHN |
[Ref.: #48991] |
Continent |
Asia |
|
[Ref.: #67770] |
Sample type/isolated from |
Root nodule of soybean |
[Ref.: #67770] |
Geographic location (country and/or sea, region) |
Honan |
[Ref.: #67770] |
Country |
China |
[Ref.: #67770] |
Country ISO 3 Code |
CHN |
[Ref.: #67770] |
Continent |
Asia |
|
[Ref.: #119450] |
Sample type/isolated from |
Plant, Glycine max, soybean root nodule |
[Ref.: #119450] |
Geographic location (country and/or sea, region) |
Honan |
[Ref.: #119450] |
Country |
China |
[Ref.: #119450] |
Country ISO 3 Code |
CHN |
[Ref.: #119450] |
Continent |
Asia |
* marker position based on {}
|
|
Isolation sources categories |
#Host |
#Plants |
#Herbaceous plants (Grass,Crops) |
#Host Body-Site |
#Plant |
#Root nodule |
|
|
-
Information on genomic background e.g. entries in nucleic sequence databass Sequence information
|
16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
|
|
Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #2339] |
Sinorhizobium fredii strain USDA 205 16S ribosomal RNA, partial sequence |
NR_036957 |
1437 |
|
380 tax ID |
[Ref.: #2339] |
Ficus variegata Roding, 1798 isolate X6723 cytochrome c oxidase subunit I (COI) gene, partial cds; mitochondrial |
X6723 |
616 |
|
1030158 tax ID |
[Ref.: #20218] |
Sinorhizobium fredii partial 16S rRNA gene, strain LMG 6217 |
X67231 |
1437 |
|
380 tax ID |
* |
[Ref.: #20218] |
Sinorhizobium fredii gene for 16S rRNA, partial sequence, strain: NBRC 14780 |
AB680661 |
1410 |
|
380 tax ID |
* |
[Ref.: #20218] |
Sinorhizobium fredii gene for 16S rRNA, partial sequence, strain: USDA 205 |
AB433353 |
1407 |
|
380 tax ID |
* |
[Ref.: #20218] |
Sinorhizobium fredii DNA, 16S-23S ribosomal RNA intergenic spacer region, clone: 205-A-2 |
AB433359 |
1081 |
|
380 tax ID |
* |
[Ref.: #20218] |
Sinorhizobium fredii DNA, 16S-23S ribosomal RNA intergenic spacer region, clone: 205-B-1 |
AB433360 |
1063 |
|
380 tax ID |
* |
[Ref.: #20218] |
Sinorhizobium fredii strain USDA 205 16S-23S ribosomal RNA intergenic spacer region |
AF284451 |
1142 |
|
380 tax ID |
* |
[Ref.: #20218] |
Sinorhizobium fredii strain USDA205 16S ribosomal RNA gene, partial sequence |
AY260149 |
1421 |
|
380 tax ID |
* |
[Ref.: #20218] |
Sinorhizobium fredii strain USDA205 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
HQ143405 |
821 |
|
380 tax ID |
* |
[Ref.: #20218] |
Rhizobium fredii 16S ribosomal RNA gene, partial |
M74163 |
260 |
|
380 tax ID |
* |
[Ref.: #20218] |
Sinorhizobium fredii gene for 16S rRNA, complete sequence, type strain: ATCC 35423 |
D14516 |
1481 |
|
380 tax ID |
* |
[Ref.: #20218] |
Sinorhizobium fredii gene for 16S rRNA, strain: IAM 13625 |
D12792 |
1438 |
|
380 tax ID |
* |
[Ref.: #20218] |
Sinorhizobium fredii strain LMG 6217 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA, partial sequence |
AF345282 |
1060 |
|
380 tax ID |
* |
|
|
Genome sequence information: |
|
|
Sequence accession description |
Seq. accession number |
Assembly level |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #67770] |
Sinorhizobium fredii NBRC 14780 |
GCA_006539605 |
contig |
|
380 tax ID |
[Ref.: #66792] |
Sinorhizobium fredii strain NBRC 14780 |
380.55 |
wgs |
|
380 tax ID |
* |
|
|
-
Availability in culture collections External links
[Ref.: #2339] |
Culture collection no. |
DSM 5851, ATCC 35423, LMG 6217, USDA 205, CCUG 27877, JCM 20967, HAMBI 2075, IAM 13625, ICMP 11139, IFO 14780, NBRC 14780, NCIMB 12104, NRRL B-14241, NRRL B-14594, OUT 30005, CIP 107333, ORS 669T |
[Ref.: #82737] |
SI-ID 4760
|
* |
|
Literature: |
Only first 10 entries are displayed. Click here to see all.Click here to see only first 10 entries. |
|
|
Title |
Authors |
Journal |
DOI |
Year |
|
Phylogeny |
Notoacmeibacter marinus gen. nov., sp. nov., isolated from the gut of a limpet and proposal of Notoacmeibacteraceae fam. nov. in the order Rhizobiales of the class Alphaproteobacteria. |
Huang Z, Guo F, Lai Q, Shao Z |
Int J Syst Evol Microbiol |
10.1099/ijsem.0.001951 |
2017 |
* |
Phylogeny |
[A sinorhizobium fredll strain that effectively nodulate Medicago sativa]. |
Zhang H, Zhang H, Li X, Yang S |
Wei Sheng Wu Xue Bao |
|
2001 |
* |
Pathogenicity |
Production of cell-associated polysaccharides of Rhizobium fredii USDA205 is modulated by apigenin and host root extract. |
Reuhs BL, Kim JS, Badgett A, Carlson RW |
Mol Plant Microbe Interact |
10.1094/mpmi-7-0240 |
1994 |
* |
Genetics |
Rhizobium fredii and Rhizobium meliloti produce 3-deoxy-D-manno-2-octulosonic acid-containing polysaccharides that are structurally analogous to group II K antigens (capsular polysaccharides) found in Escherichia coli. |
Reuhs BL, Carlson RW, Kim JS |
J Bacteriol |
10.1128/jb.175.11.3570-3580.1993 |
1993 |
* |
|
The Soybean Rfg1 Gene Restricts Nodulation by Sinorhizobium fredii USDA193. |
Fan Y, Liu J, Lyu S, Wang Q, Yang S, Zhu H |
Front Plant Sci |
10.3389/fpls.2017.01548 |
2017 |
* |
|
RNA-Seq Analysis of Differential Gene Expression Responding to Different Rhizobium Strains in Soybean (Glycine max) Roots. |
Yuan S, Li R, Chen S, Chen H, Zhang C, Chen L, Hao Q, Shan Z, Yang Z, Qiu D, Zhang X, Zhou X |
Front Plant Sci |
10.3389/fpls.2016.00721 |
2016 |
* |
|
Serological Relatedness of Rhizobium fredii to Other Rhizobia and to the Bradyrhizobia. |
Sadowsky MJ, Bohlool BB, Keyser HH |
Appl Environ Microbiol |
10.1128/aem.53.8.1785-1789.1987 |
1987 |
* |
|
Growth of fast- and slow-growing rhizobia on ethanol. |
Sadowsky MJ, Bohlool BB |
Appl Environ Microbiol |
10.1128/aem.52.4.951-953.1986 |
1986 |
* |
|
- References
-
#2339 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 5851
|
-
-
-
#38202 |
; Curators of the CIP;
|
-
#48991 |
Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG;
CCUG 27877
|
-
-
#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
|
-
#68369 |
Automatically annotated from API 20NE .
|
-
#68382 |
Automatically annotated from API zym .
|
-
#69479 |
João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.:
MicrobeAtlas 1.0 beta
.
|
-
-
#82737 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID4760.1 )
|
-
#119450 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 107333
|
- * These data were automatically processed and therefore are not curated
Change proposal
Successfully sent
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