Halobacillus seohaensis (DSM 22302, CCUG 54358, KCTC 13145)

Name: Halobacillus seohaensis (DSM 22302, CCUG 54358, KCTC 13145)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1354

Type strain

Strain Designation ISL-50

Culture col. no. DSM 22302 CCUG 54358 KCTC 13145 ISL-50

NCBI tax ID(s) 447421

Special Collections DSMZ CCUG KCTC Literature strains

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Halobacillus seohaensis ISL-50 is an aerobe, spore-forming, mesophilic prokaryote that forms circular colonies and was isolated from Sediment, marine solar saltern.

spore-forming Gram-positive motile rod-shaped colony-forming aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 401462

KCTC 13145,DSM 22302,CCUG 54358

@ref 20215

Last LPSN update 2025-12-16 09:47:05

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Halobacillus

Species Halobacillus seohaensis

Full scientific name Halobacillus seohaensis Yoon et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement
22991	positive	1.0-4.0 µm	0.5-0.9 µm	rod-shaped	monotrichous, polar
67771				rod-shaped	monotrichous, polar
67771	variable

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
22991	1.5-2.0 mm	yellowish-white	circular	7 days	MA supplemented with 6 % (w/v) NaCl
60149				2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16265	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 50.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
22991	MA supplemented with 6 % (w/v) NaCl

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16265	positive	growth	30	mesophilic
22991	positive	growth	4.0	psychrophilic
22991	positive	growth	38.0	mesophilic
22991	negative	growth	39.0
22991	positive	optimum	37.0	mesophilic
60149	positive	growth	30	mesophilic
67771	positive	growth	37	mesophilic

Culture pH

@ref	Ability	Type	PH
22991	positive	optimum	7.0-8.0
22991	positive	growth	6.0
22991		growth	5.5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67771	aerobe
125439	obligate aerobe	91.6

Spore formation

@ref	Spore description	Spore formation	Confidence
22991	ellipsoidal, central or subterminal
125438			93.735

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
22991		NaCl		optimum	8.0 %(w/v)
22991	moderately halophilic	NaCl	positive	growth	1.0-21.0 %(w/v)

Observation

67771

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
22991	30089 ChEBI	acetate	-	growth
22991	16150 ChEBI	benzoate	-	growth
22991		casein	+	hydrolysis
22991	17057 ChEBI	cellobiose	-	growth
22991	17057 ChEBI	cellobiose	+	builds acid from
22991	16947 ChEBI	citrate	-	growth
22991	15824 ChEBI	D-fructose	-	builds acid from
22991	15824 ChEBI	D-fructose	-	growth
22991	12936 ChEBI	D-galactose	-	builds acid from
22991	12936 ChEBI	D-galactose	-	growth
22991	17634 ChEBI	D-glucose	-	builds acid from
22991	17634 ChEBI	D-glucose	-	growth
22991	16899 ChEBI	D-mannitol	+	builds acid from
22991	16024 ChEBI	D-mannose	-	builds acid from
22991	16024 ChEBI	D-mannose	-	growth
22991	16988 ChEBI	D-ribose	+	builds acid from
22991	17924 ChEBI	D-sorbitol	+	builds acid from
22991	65327 ChEBI	D-xylose	-	growth
22991	65327 ChEBI	D-xylose	+	builds acid from
22991	4853 ChEBI	esculin	-	hydrolysis
22991	15740 ChEBI	formate	-	growth
22991	5291 ChEBI	gelatin	-	hydrolysis
22991	17368 ChEBI	hypoxanthine	-	hydrolysis
22991	30849 ChEBI	L-arabinose	-	builds acid from
22991	30849 ChEBI	L-arabinose	-	growth
22991	29985 ChEBI	L-glutamate	-	growth
22991	15589 ChEBI	L-malate	+	growth
22991	62345 ChEBI	L-rhamnose	-	builds acid from
22991	17716 ChEBI	lactose	-	builds acid from
22991	17306 ChEBI	maltose	-	builds acid from
22991	17306 ChEBI	maltose	-	growth
22991	6731 ChEBI	melezitose	-	builds acid from
22991	28053 ChEBI	melibiose	-	builds acid from
22991	17268 ChEBI	myo-inositol	-	builds acid from
22991	17632 ChEBI	nitrate	-	reduction
22991	15361 ChEBI	pyruvate	-	growth
22991	16634 ChEBI	raffinose	-	builds acid from
22991	17814 ChEBI	salicin	-	growth
22991	28017 ChEBI	starch	+	hydrolysis
22991	30031 ChEBI	succinate	-	growth
22991	17992 ChEBI	sucrose	-	growth
22991	17992 ChEBI	sucrose	+	builds acid from
22991	27082 ChEBI	trehalose	-	growth
22991	27082 ChEBI	trehalose	+	builds acid from
22991	53424 ChEBI	tween 20	-	hydrolysis
22991	53423 ChEBI	tween 40	-	hydrolysis
22991	53425 ChEBI	tween 60	-	hydrolysis
22991	53426 ChEBI	tween 80	-	hydrolysis
22991	18186 ChEBI	tyrosine	-	hydrolysis
22991	15318 ChEBI	xanthine	-	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite
22991	28971	ampicillin
22991	3393	carbenicillin
22991	3542	cephalothin
22991	17698	chloramphenicol
22991	17833	gentamicin
22991	6104	kanamycin
22991	6472	lincomycin
22991	7507	neomycin
22991	28368	novobiocin
22991	16869	oleandomycin
22991	18208	penicillin g
22991	8309	polymyxin b
22991	17076	streptomycin
22991	27902	tetracycline

Enzymes

@ref	Value	Activity	Ec
22991	acid phosphatase	+	3.1.3.2
22991	alkaline phosphatase	-	3.1.3.1
22991	alpha-chymotrypsin	-	3.4.21.1
22991	alpha-fucosidase	-	3.2.1.51
22991	alpha-galactosidase	-	3.2.1.22
22991	alpha-glucosidase	-	3.2.1.20
22991	alpha-mannosidase	-	3.2.1.24
22991	beta-galactosidase	-	3.2.1.23
22991	beta-glucosidase	-	3.2.1.21
22991	beta-glucuronidase	-	3.2.1.31
22991	catalase	+	1.11.1.6
22991	cystine arylamidase	-	3.4.11.3
22991	cytochrome oxidase	+	1.9.3.1
22991	esterase (C 4)	+
22991	esterase lipase (C 8)	+
22991	leucine arylamidase	-	3.4.11.1
22991	lipase (C 14)	-
22991	N-acetyl-beta-glucosaminidase	-	3.2.1.52
22991	naphthol-AS-BI-phosphohydrolase	-
22991	trypsin	-	3.4.21.4
22991	urease	-	3.5.1.5
22991	valine arylamidase	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment
#Condition	#Saline	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture temperature
16265	Sediment, marine solar saltern		Byunsan, Yellow Sea	Republic of Korea	KOR	Asia
22991							marine agar 2216 (MA; Difco) supplemented with 8 % (w/v) NaCl	30.0
60149	Sediment,marine solar saltern	2005	Byunsan	Republic of Korea	KOR	Asia
67771	From marine solar saltern field		the Yellow Sea at Byunsan	Republic of Korea	KOR	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16265	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	IMG accession	NCBI tax ID	Score	BV-BRC accession	INSDC accession
66792	Halobacillus seohaensis DSM 22302	complete	2901090068	447421	86.73
66792	Halobacillus seohaensis strain DSM 22302	contig		447421	64.54	447421.3
124043	ASM4266304v1 assembly for Halobacillus seohaensis CCUG 54358	scaffold		447421	36.78		GCA_042663045

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16265	Halobacillus seohaensis strain ISL-50 16S ribosomal RNA gene, partial sequence	EF612763	1522		447421

GC content

@ref	GC-content (mol%)	Method
16265	39.3
22991	39.3	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Halobacillus seohaensis strain DSM 22302
PATRIC: 447421.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	77.00	no
125439	motility	BacteriaNetⓘ	yes	71.20	no
125439	gram_stain	BacteriaNetⓘ	variable	77.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	91.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Halobacillus seohaensis strain DSM 22302
PATRIC: 447421.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	78.00	no
125438	anaerobic	anaerobicⓘ	no	92.61	yes
125438	spore-forming	spore-formingⓘ	yes	93.74	yes
125438	aerobic	aerobicⓘ	yes	79.26	no
125438	thermophilic	thermophileⓘ	no	94.98	yes
125438	flagellated	motile2+ⓘ	yes	86.26	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halobacillus seohaensis sp. nov., isolated from a marine solar saltern in Korea.	Yoon JH, Kang SJ, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.65341-0	2008

References

#16265	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22302
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22991	Jung-Hoon Yoon,So-Jung Kang,Tae-Kwang Oh: Halobacillus seohaensis sp. nov., isolated from a marine solar saltern in Korea. IJSEM 58: 622 - 627 2008 ( DOI 10.1099/ijs.0.65341-0 , PubMed 18319467 )
#60149	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54358
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halobacillus seohaensis (DSM 22302, CCUG 54358, KCTC 13145)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042663045

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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