Name: Kocuria rosea CIP 82.61
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 135377

Type strain:

Species: Kocuria rosea

Culture col. no.: CIP 82.61, ATCC 516, CCM 839

Strain history: CIP <- 1982, CCM, Micrococcus roseus <- J.B. Evans <- ATCC <- K.F. Meyer, Rhodococcus roseus

NCBI tax ID(s): 1275 (species)

SI-ID 9317

LMG 14226, ATCC 516, CCM 839, NCTC 7521, VKM B-1862, CIP 82.61, VKM Ac-2199

Special Collections

Other strains from Kocuria rosea

Section

When using BacDive for research please cite our paper

Kocuria rosea CIP 82.61 is a mesophilic bacterium of the family Micrococcaceae.

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Kocuria*
	Species	**Kocuria rosea**
	Full Scientific Name (LPSN)	Kocuria rosea (Flügge 1886) Stackebrandt et al. 1995

	Synonym	Pelczaria aurantia
	Synonym	Kocuria erythromyxa
	Synonym	Deinococcus erythromyxa
	Synonym	Micrococcus roseus

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	positive Confidence in %94.212
[Ref.: #125439]	Gram stain	positive Confidence in %99.4

[Ref.: #125438]	Motility	no Confidence in %90.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #34479]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #34479]

Culture medium growth

[Ref.: #34479]

Culture medium composition

expand / minimize

[Ref.: #34479]

Culture medium

CIP Medium 3

[Ref.: #34479]

Culture medium growth

[Ref.: #34479]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #34479]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

facultative anaerobe Confidence in %93.4

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #34479]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Kocuria rosea ATCC 516	GCA_003124065	contig	GenBank ENA	1275 tax ID	*
[Ref.: #66792]	Kocuria rosea strain ATCC 516	1275.8	wgs	PATRIC	1275 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Kocuria rosea strain ATCC 516 PATRIC: 1275.8
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	94.212	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	97.68	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	65.574	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	85.045	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	97.111	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	90.5	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Kocuria rosea ATCC 516 NCBI: GCA_003124065
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	facultative anaerobe	93.4
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	99.4
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	82.3
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	51.1

Availability in culture collections External links

[Ref.: #34479]

Culture collection no.

CIP 82.61, ATCC 516, CCM 839

[Ref.: #92745]

SI-ID 9317

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#34479 Collection of Institut Pasteur ; Curators of the CIP; CIP 82.61

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#92745

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID9317.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Kocuria rosea strain ATCC 516

Kocuria rosea ATCC 516

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