Klebsiella oxytoca (CIP 103569, ATCC 49131, AmMS 101)

Name: Klebsiella oxytoca (CIP 103569, ATCC 49131, AmMS 101)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 135290

Type strain

Strain Designation AmMS 101

Culture col. no. CIP 103569 ATCC 49131 AmMS 101

NCBI tax ID(s) 571

Special Collections CIP

History CIP <- 1992, T. Vidalenc, Sanofi Diag. Pasteur, France <- ATCC <- Baxter Healthcare Corp.: strain AmMS 101

Links

Klebsiella oxytoca AmMS 101 is a facultative anaerobe, mesophilic, Gram-negative prokaryote that was isolated from Human, Human isolate.

Gram-negative rod-shaped facultative anaerobe mesophilic 16S sequence

Name and taxonomic classification

SI-ID 42310

ATCC 49131,CIP 103569,ACM 4729

@ref 20215

Last LPSN update 2025-12-16 10:02:16

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Klebsiella

Species Klebsiella oxytoca

Full scientific name Klebsiella oxytoca (Flügge 1886) Lautrop 1956 (Approved Lists 1980)

Synonyms (1)

"Bacillus oxytocus"

BacDive ID	Other strains from **Klebsiella oxytoca** (41)	Type strain
4941	K. oxytoca 479-2, DSM 5175, ATCC 13182, IAM 14201, JCM ... (type strain)
130956	K. oxytoca 1028, DSM 24121
4942	K. oxytoca LRA 006 01 73, CCUG 29298, DSM 6673, ATCC ...
4943	K. oxytoca M5a1, DSM 7342, DSM 3539, NCIB 12204
4944	K. oxytoca TauN1, DSM 16963
4945	K. oxytoca Colworth2703, DSM 25736, CIP 110043, NCIMB ...
130303	K. oxytoca BAS-10, DSM 29614
134506	K. oxytoca KER, CIP 105873
134796	K. oxytoca Sobeaut, CIP 66.6
134797	K. oxytoca Belloni, CIP 66.7
134983	K. oxytoca U.910.295092, CIP 107218
135330	K. oxytoca AmMS 247, CIP 103663, ATCC 49473
136480	K. oxytoca SL911, CIP 106098
136481	K. oxytoca SL9111, CIP 106099
137289	K. oxytoca SL 7811, CIP 105096
137590	K. oxytoca CIP 79.32
139515	K. oxytoca SL 781, CIP 104963
141247	K. oxytoca CCUG 383
142930	K. oxytoca CCUG 15788
143417	K. oxytoca CCUG 19048
143547	K. oxytoca CCUG 20014
143868	K. oxytoca CCUG 21666
144225	K. oxytoca CCUG 23732
144234	K. oxytoca CCUG 23880
144772	K. oxytoca CCUG 26509
144859	K. oxytoca CCUG 26858
145816	K. oxytoca CCUG 29683 A
146943	K. oxytoca CCUG 32516
147262	K. oxytoca CCUG 33222
150581	K. oxytoca CCUG 41654
150684	K. oxytoca CCUG 41957
150983	K. oxytoca CCUG 42935
151279	K. oxytoca CCUG 43602
153718	K. oxytoca CCUG 50735
153933	K. oxytoca CCUG 51683
155829	K. oxytoca CCUG 59412
155992	K. oxytoca CCUG 59935
156818	K. oxytoca CCUG 65544
173354	K. oxytoca U12, CRBIP19.318
173355	K. oxytoca U10, CRBIP19.319
173356	K. oxytoca CIP 111713

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
34365	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
34365	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
34365	CIP Medium 3			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
34365	positive	growth	30	mesophilic
34365	positive	growth	10-41
34365	negative	growth	5

Physiology and metabolism

Oxygen tolerance

34365

Oxygen tolerancefacultative anaerobe

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
34365	16947 ChEBI	citrate	+	carbon source
68371	17108 ChEBI	D-arabinose	+	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	+	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	+	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	+	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	+	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	+	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	+	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	+	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	+	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	+	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
34365	15792 ChEBI	malonate	+	assimilation
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	+	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	+	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
34365	17632 ChEBI	nitrate	+	reduction
34365	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	+	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	+	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	+	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
34365	132112 ChEBI	sodium thiosulfate	-	builds gas from
68371	28017 ChEBI	starch	+	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
34365	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
34365	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
34365	15688 ChEBI	acetoin	+
34365	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
34365	alcohol dehydrogenase	-	1.1.1.1
34365	beta-galactosidase	+	3.2.1.23
34365	catalase	+	1.11.1.6
34365	gelatinase	-
34365	lysine decarboxylase	+	4.1.1.18
34365	ornithine decarboxylase	-	4.1.1.17
34365	oxidase	-
34365	urease	+	3.5.1.5

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
34365	not determinedn.d.	+	-	+	+	+	+	-	+	-	+	+	+	+	+	+	+	+	+	+	-	+	+	+/-	+	+	+	+	+	+	+	+	+	-	+	+	+	-	-	+	+/-	-	+	-	+	+	+	+	+	+

Isolation, sampling and environmental information

Isolation

34365

Sample typeHuman, Human isolate

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
34365	2	Risk group (French classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Klebsiella oxytoca partial 16S rRNA gene, strain SB136	AJ871857	1454		571

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Polymer-Based Hydroxyapatite-Silver Composite Resin with Enhanced Antibacterial Activity for Dental Applications.	Garibay-Alvarado JA, Garcia-Zamarron DJ, Silva-Holguin PN, Donohue-Cornejo A, Cuevas-Gonzalez JC, Espinosa-Cristobal LF, Ruiz-Baltazar AJ, Reyes-Lopez SY.	Polymers (Basel)	10.3390/polym16142017	2024
	Design of Potent and Salt-Insensitive Antimicrobial Branched Peptides.	To J, Zhang X, Tam JP.	Polymers (Basel)	10.3390/polym15173594	2023
	Culture-independent identification of bloodstream infections from whole blood: prospective evaluation in specimens of known infection status.	Iyer V, Castro D, Malla B, Panda B, Rabson AR, Horowitz G, Heger N, Gupta K, Singer A, Norwitz ER.	J Clin Microbiol	10.1128/jcm.01498-23	2024
	Facial amphiphilic naphthoic acid-derived antimicrobial polymers against multi-drug resistant gram-negative bacteria and biofilms.	Kurnaz LB, Barman S, Yang X, Fisher C, Outten FW, Nagarkatti P, Nagarkatti M, Tang C.	Biomaterials	10.1016/j.biomaterials.2023.122275	2023
	First Evidence of a Combination of Terpinen-4-ol and alpha-Terpineol as a Promising Tool against ESKAPE Pathogens.	Johansen B, Duval RE, Sergere JC.	Molecules	10.3390/molecules27217472	2022
Enzymology	Fast identification of Bacteria for Quality Control of Drinking Water through A Static Headspace Sampler Coupled to a Sensory Perception System.	Carrillo J, Duran C.	Biosensors (Basel)	10.3390/bios9010023	2019
	The efficacy of commercial decontamination agents differs between standardised test settings and research laboratory usage for a variety of bacterial species.	Uy B, Read H, van de Pas S, Marnane R, Casu F, Swift S, Wiles S.	PeerJ	10.7717/peerj.13646	2022
	Bioactive Natural Products for Chemical Control of Microorganisms: Scientific Prospecting (2001-2021) and Systematic Review.	Feitosa BF, de Alcantara CM, de Lima ABS, Silva AS, Araujo ADS, Cavalcanti MT, Mori E, Araujo IM, de Farias PAM, Wilairatana P, Coutinho HDM.	Molecules	10.3390/molecules27185917	2022
	Antimicrobial resistance and molecular characterization of Klebsiella species causing bovine mastitis in Nghe An province, Vietnam.	Tran MT, Vu DM, Vu MD, Bui MTP, Dang BX, Dang LTM, Le TV.	J Adv Vet Anim Res	10.5455/javar.2023.j662	2023
Genetics	The DBL-1/TGF-beta signaling pathway tailors behavioral and molecular host responses to a variety of bacteria in Caenorhabditis elegans.	Madhu B, Lakdawala MF, Gumienny TL.	Elife	10.7554/elife.75831	2023
Pathogenicity	In vitro antibacterial activity of poly (amidoamine)-G7 dendrimer.	Gholami M, Mohammadi R, Arzanlou M, Akbari Dourbash F, Kouhsari E, Majidi G, Mohseni SM, Nazari S.	BMC Infect Dis	10.1186/s12879-017-2513-7	2017
	Antibacterial activity of amino- and amido- terminated poly (amidoamine)-G6 dendrimer on isolated bacteria from clinical specimens and standard strains.	Rastegar A, Nazari S, Allahabadi A, Falanji F, Akbari Dourbash FAD, Rezai Z, Alizadeh Matboo S, Hekmat-Shoar R, Mohseni SM, Majidi G.	Med J Islam Repub Iran	10.14196/mjiri.31.64	2017
	Low-dose irradiation affects the functional behavior of oral microbiota in the context of mucositis.	Vanhoecke BW, De Ryck TR, De boel K, Wiles S, Boterberg T, Van de Wiele T, Swift S.	Exp Biol Med (Maywood)	10.1177/1535370215595467	2016
Phylogeny	Rapid detection and differentiation of Salmonella species, Salmonella Typhimurium and Salmonella Enteritidis by multiplex quantitative PCR.	Heymans R, Vila A, van Heerwaarden CAM, Jansen CCC, Castelijn GAA, van der Voort M, Biesta-Peters EG.	PLoS One	10.1371/journal.pone.0206316	2018
Pathogenicity	Bioactive endophytic fungi isolated from Caesalpinia echinata Lam. (Brazilwood) and identification of beauvericin as a trypanocidal metabolite from Fusarium sp.	Campos FF, Sales Junior PA, Romanha AJ, Araujo MS, Siqueira EP, Resende JM, Alves TM, Martins-Filho OA, Santos VL, Rosa CA, Zani CL, Cota BB.	Mem Inst Oswaldo Cruz	10.1590/0074-02760140243	2015
	Assessment of total phenolic, antioxidant, and antibacterial activities of Passiflora species.	Ramaiya SD, Bujang JS, Zakaria MH.	ScientificWorldJournal	10.1155/2014/167309	2014
Pathogenicity	Six groups of the OXY beta-Lactamase evolved over millions of years in Klebsiella oxytoca.	Fevre C, Jbel M, Passet V, Weill FX, Grimont PA, Brisse S.	Antimicrob Agents Chemother	10.1128/aac.49.8.3453-3462.2005	2005
Enzymology	Duplex DNA-Invading gamma-Modified Peptide Nucleic Acids Enable Rapid Identification of Bloodstream Infections in Whole Blood.	Nolling J, Rapireddy S, Amburg JI, Crawford EM, Prakash RA, Rabson AR, Tang YW, Singer A.	mBio	10.1128/mbio.00345-16	2016
Cultivation	Cost-effective and rapid presumptive identification of gram-negative bacilli in routine urine, pus, and stool cultures: evaluation of the use of CHROMagar orientation medium in conjunction with simple biochemical tests.	Ohkusu K.	J Clin Microbiol	10.1128/jcm.38.12.4586-4592.2000	2000
Enzymology	BactQuant: an enhanced broad-coverage bacterial quantitative real-time PCR assay.	Liu CM, Aziz M, Kachur S, Hsueh PR, Huang YT, Keim P, Price LB.	BMC Microbiol	10.1186/1471-2180-12-56	2012
Phylogeny	Multicenter evaluation of the MicroScan Rapid Gram-Negative Identification Type 3 Panel.	Bascomb S, Abbott SL, Bobolis JD, Bruckner DA, Connell SJ, Cullen SK, Daugherty M, Glenn D, Janda JM, Lentsch SJ, Lindquist D, Mayhew PB, Nothaft DM, Skinner JR, Williams GB, Wong J, Zimmer BL.	J Clin Microbiol	10.1128/jcm.35.10.2531-2536.1997	1997
Metabolism	5' nuclease PCR assay to detect Yersinia pestis.	Higgins JA, Ezzell J, Hinnebusch BJ, Shipley M, Henchal EA, Ibrahim MS.	J Clin Microbiol	10.1128/jcm.36.8.2284-2288.1998	1998
Phylogeny	Evaluation of the Wider system, a new computer-assisted image-processing device for bacterial identification and susceptibility testing.	Canton R, Perez-Vazquez M, Oliver A, Sanchez Del Saz B, Gutierrez MO, Martinez-Ferrer M, Baquero F.	J Clin Microbiol	10.1128/jcm.38.4.1339-1346.2000	2000
Phylogeny	Rapid identification of bacteria from positive blood cultures by fluorescence-based PCR-single-strand conformation polymorphism analysis of the 16S rRNA gene.	Turenne CY, Witwicki E, Hoban DJ, Karlowsky JA, Kabani AM.	J Clin Microbiol	10.1128/jcm.38.2.513-520.2000	2000
	An unusual structural motif of antimicrobial peptides containing end-to-end macrocycle and cystine-knot disulfides.	Tam JP, Lu YA, Yang JL, Chiu KW.	Proc Natl Acad Sci U S A	10.1073/pnas.96.16.8913	1999

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#34365	Collection of Institut Pasteur ; Curators of the CIP; CIP 103569
#68371	Automatically annotated from API 50CH acid .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Klebsiella oxytoca (CIP 103569, ATCC 49131, AmMS 101)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API 50CHac

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

16S sequences

Genome-based predictions

Literature

Literature

References

BacDive

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