Haemophilus haemolyticus AQ/3273 is a microaerophile, mesophilic, Gram-negative prokaryote that was isolated from Human sputum,chest infection.
Gram-negative rod-shaped microaerophile mesophilic genome sequence 16S sequence| @ref 20215 |
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Last LPSN update
2025-12-16 10:02:15 |
| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Pasteurellales |
| Family Pasteurellaceae |
| Genus Haemophilus |
| Species Haemophilus haemolyticus |
| Full scientific name Haemophilus haemolyticus Bergey et al. 1923 (Approved Lists 1980) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 34239 | MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and Neisseria | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);PolyVitex mischung (10.000 ml) | |||
| 66335 | HAEMOPHILUS MEDIUM (DSMZ Medium 804) | Medium recipe at MediaDive  | Name: HAEMOPHILUS MEDIUM (DSMZ Medium 804) Composition: Mueller-Hinton broth 21.0 g/l Yeast extract 5.0 g/l Distilled water | ||
| 66335 | CHOCOLATE AGAR (DSMZ Medium 429b) | Medium recipe at MediaDive | Name: CHOCOLATE AGAR (DSMZ Medium 429b) Composition: Horse blood 100.0 g/l Sheep blood 100.0 g/l Columbia agar base | ||
| 34239 | CIP Medium 10 | Medium recipe at CIP |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68377 | 17634 ChEBI | D-glucose | + | builds acid from | from API NH |
| 68377 | 17306 ChEBI | maltose | + | builds acid from | from API NH |
| 34239 | 17632 ChEBI | nitrate | + | reduction | |
| 34239 | 16301 ChEBI | nitrite | - | reduction | |
| 68377 | 18257 ChEBI | ornithine | - | degradation | from API NH |
| 68377 | 17992 ChEBI | sucrose | - | builds acid from | from API NH |
| 68377 | 27897 ChEBI | tryptophan | - | energy source | from API NH |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68377 | alkaline phosphatase | + | 3.1.3.1 | from API NH |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 68377 | beta-galactosidase | - | 3.2.1.23 | from API NH |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68377 | beta-lactamase | - | 3.5.2.6 | from API NH |
| 34239 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 68377 | gamma-glutamyltransferase | - | 2.3.2.2 | from API NH |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68377 | lipase | - | from API NH | |
| 68382 | lipase (C 14) | - | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 68377 | ornithine decarboxylase | - | 4.1.1.17 | from API NH |
| 34239 | oxidase | - | ||
| 68377 | proline-arylamidase | - | 3.4.11.5 | from API NH |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 68377 | tryptophan deaminase | - | 4.1.99.1 | from API NH |
| 34239 | urease | + | 3.5.1.5 | |
| 68382 | valine arylamidase | - | from API zym |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Human | - | |
| #Infection | #Patient | - | |
| #Host Body Product | #Fluids | #Sputum | |
| #Host Body-Site | #Other | #Torso |
Global distribution of 16S sequence NR_104930 (>99% sequence identity) for Haemophilus haemolyticus subclade from Microbeatlas 
 Aquatic Samples |
|
 Soil Samples |
1 |
 Animal Samples |
62 |
 Plant Samples |
|
| Total Samples | 63 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM436853v1 assembly for Haemophilus haemolyticus ATCC 33390 | contig | GCA_004368535   | 726.278  | 726 | 75.69 | | |
| 66792 | ASM167904v1 assembly for Haemophilus haemolyticus CCUG 12834 | scaffold | GCA_001679045 | 726.59 | 2916272478  | 726 | 75.04 | |
| 66792 | ASM26228v1 assembly for Haemophilus haemolyticus HK386 | contig | GCA_000262285 | 1095742.3 | 2531839471 | 1095742 | 73.24 | |
| 124043 | 43908_F02 assembly for Haemophilus haemolyticus NCTC10659 | contig | GCA_901482425 | 726.279 | 8116425758 | 726 | 33.77 | |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 66335 | Haemophilus haemolyticus strain CIP 103290 16S ribosomal RNA, partial sequence | NR_104930 | 1486 | | 726 | |
| 124043 | Haemophilus haemolyticus strain CIP 103290 16S ribosomal RNA gene, complete sequence. | JN175335 | 1486 | | 726 | |
| 124043 | Haemophilus haemolyticus CIP 103290 gene for 16S rRNA, partial sequence. | LC752364 | 586 | | 726 | |
| 124043 | Haemophilus haemolyticus strain NCTC 10659 16S ribosomal RNA gene, partial sequence. | M75045 | 1479 | | 726 | |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Enzymology | Identification and Characterization of "Haemophilus quentini" Strains Causing Invasive Disease in Ontario, Canada (2016 to 2018). | Kus JV, Shuel M, Soares D, Hoang W, Law D, Tsang RSW. | J Clin Microbiol | 10.1128/jcm.01254-19 | 2019 | |
| Phylogeny | Typing of nonencapsulated haemophilus strains by repetitive-element sequence-based PCR using intergenic dyad sequences. | Bruant G, Watt S, Quentin R, Rosenau A. | J Clin Microbiol | 10.1128/jcm.41.8.3473-3480.2003 | 2003 | |
| Nucleotide sequences of genes coding for fimbrial proteins in a cryptic genospecies of Haemophilus spp. isolated from neonatal and genital tract infections. | Gousset N, Rosenau A, Sizaret PY, Quentin R. | Infect Immun | 10.1128/iai.67.1.8-15.1999 | 1999 | | |
| Genetic characterization of a cryptic genospecies of Haemophilus causing urogenital and neonatal infections. | Quentin R, Martin C, Musser JM, Pasquier-Picard N, Goudeau A. | J Clin Microbiol | 10.1128/jcm.31.5.1111-1116.1993 | 1993 | | |
| A light-controlled one-tube detection platform combining CRISPR-Cas12a and RPA: an innovative approach for rapid diagnosis of Acinetobacter baumannii. | Zhou Z, Pan L, Luo S, Ma J, Ren B, Liang L, Li X, Wei G. | Front Bioeng Biotechnol | 10.3389/fbioe.2025.1663915 | 2025 | | |
| Genomic profiling of cefotaxime-resistant Haemophilus influenzae from Norway and Sweden reveals extensive expansion of virulent multidrug-resistant international clones | Skaare D, Anthonisen I, Zecic N, Jenkins A, Caugant D, Ranheim T, Sundsfjord A, Hegstad K. | Front Microbiol | 2025 | | ||
| In Vitro Anti-NTHi Activity of Haemophilin-Producing Strains of Haemophilus haemolyticus. | Atto B, Latham R, Kunde D, Gell DA, Tristram S. | Pathogens | 10.3390/pathogens9040243 | 2020 | | |
| Pathogenicity | Haemophilin-Producing Strains of Haemophilus haemolyticus Protect Respiratory Epithelia from NTHi Colonisation and Internalisation. | Atto B, Kunde D, Gell DA, Tristram S. | Pathogens | 10.3390/pathogens10010029 | 2021 | |
| Rapid detection of Pseudomonas aeruginosa by glycerol one-pot RAA/CRISPR-Cas12a method | Wei L, Luo S, Zhou W, Ren B, Li M, Liang L, Li X, Wei G. | Front Chem | 2025 | | ||
| Enzymology | Recommendations for application of Haemophilus influenzae PCR diagnostics to respiratory specimens for children living in northern Australia: a retrospective re-analysis. | Beissbarth J, Binks MJ, Marsh RL, Chang AB, Leach AJ, Smith-Vaughan HC. | BMC Res Notes | 10.1186/s13104-018-3429-z | 2018 | |
| Phylogeny | A PCR-high-resolution melt assay for rapid differentiation of nontypeable Haemophilus influenzae and Haemophilus haemolyticus. | Pickering J, Binks MJ, Beissbarth J, Hare KM, Kirkham LA, Smith-Vaughan H. | J Clin Microbiol | 10.1128/jcm.02191-13 | 2014 | |
| Enzymology | Duplex Quantitative PCR Assay for Detection of Haemophilus influenzae That Distinguishes Fucose- and Protein D-Negative Strains. | de Gier C, Pickering JL, Richmond PC, Thornton RB, Kirkham LA. | J Clin Microbiol | 10.1128/jcm.00982-16 | 2016 | |
| Metabolism | Comparative Profile of Heme Acquisition Genes in Disease-Causing and Colonizing Nontypeable Haemophilus influenzae and Haemophilus haemolyticus. | Hariadi NI, Zhang L, Patel M, Sandstedt SA, Davis GS, Marrs CF, Gilsdorf JR. | J Clin Microbiol | 10.1128/jcm.00345-15 | 2015 | |
| Molecular surveillance of true nontypeable Haemophilus influenzae: an evaluation of PCR screening assays. | Binks MJ, Temple B, Kirkham LA, Wiertsema SP, Dunne EM, Richmond PC, Marsh RL, Leach AJ, Smith-Vaughan HC. | PLoS One | 10.1371/journal.pone.0034083 | 2012 | | |
| Phylogeny | Haemophilus influenzae outer membrane protein P6 molecular characterization may not differentiate all strains of H. Influenzae from H. haemolyticus. | Chang A, Adlowitz DG, Yellamatty E, Pichichero M. | J Clin Microbiol | 10.1128/jcm.01255-10 | 2010 | |
| Prevalence of the sodC gene in nontypeable Haemophilus influenzae and Haemophilus haemolyticus by microarray-based hybridization. | McCrea KW, Wang ML, Xie J, Sandstedt SA, Davis GS, Lee JH, Marrs CF, Gilsdorf JR. | J Clin Microbiol | 10.1128/jcm.01416-09 | 2010 | | |
| Metabolism | Prevalence of genetic differences in phosphorylcholine expression between nontypeable Haemophilus influenzae and Haemophilus haemolyticus. | McCrea KW, Xie J, Marrs CF, Gilsdorf JR. | BMC Microbiol | 10.1186/1471-2180-10-286 | 2010 | |
| Difficulties in species identification within the genus Haemophilus - A pilot study addressing a significant problem for routine diagnostics. | Frickmann H, Podbielski A, Essig A, Schwarz NG, Zautner AE. | Eur J Microbiol Immunol (Bp) | 10.1556/eujmi.4.2014.2.2 | 2014 | | |
| Horizontal gene transfer of ftsI, encoding penicillin-binding protein 3, in Haemophilus influenzae. | Takahata S, Ida T, Senju N, Sanbongi Y, Miyata A, Maebashi K, Hoshiko S. | Antimicrob Agents Chemother | 10.1128/aac.01545-06 | 2007 | | |
| Phylogeny | Relationships of nontypeable Haemophilus influenzae strains to hemolytic and nonhemolytic Haemophilus haemolyticus strains. | McCrea KW, Xie J, LaCross N, Patel M, Mukundan D, Murphy TF, Marrs CF, Gilsdorf JR. | J Clin Microbiol | 10.1128/jcm.01832-07 | 2008 | |
| Phylogeny | A microbiome case-control study of recurrent acute otitis media identified potentially protective bacterial genera. | Lappan R, Imbrogno K, Sikazwe C, Anderson D, Mok D, Coates H, Vijayasekaran S, Bumbak P, Blyth CC, Jamieson SE, Peacock CS. | BMC Microbiol | 10.1186/s12866-018-1154-3 | 2018 | |
| Nontypeable Haemophilus influenzae genetic islands associated with chronic pulmonary infection. | Zhang L, Xie J, Patel M, Bakhtyar A, Ehrlich GD, Ahmed A, Earl J, Marrs CF, Clemans D, Murphy TF, Gilsdorf JR. | PLoS One | 10.1371/journal.pone.0044730 | 2012 | | |
| Enzymology | Use of tuf sequences for genus-specific PCR detection and phylogenetic analysis of 28 streptococcal species. | Picard FJ, Ke D, Boudreau DK, Boissinot M, Huletsky A, Richard D, Ouellette M, Roy PH, Bergeron MG. | J Clin Microbiol | 10.1128/jcm.42.8.3686-3695.2004 | 2004 | |
| Enzymology | Rapid concentration and molecular enrichment approach for sensitive detection of Escherichia coli and Shigella species in potable water samples. | Maheux AF, Bissonnette L, Boissinot M, Bernier JL, Huppe V, Picard FJ, Berube E, Bergeron MG. | Appl Environ Microbiol | 10.1128/aem.02337-10 | 2011 | |
| Development of a PCR assay for rapid detection of enterococci. | Ke D, Picard FJ, Martineau F, Menard C, Roy PH, Ouellette M, Bergeron MG. | J Clin Microbiol | 10.1128/jcm.37.11.3497-3503.1999 | 1999 | | |
| Genetics | Development of the human infant intestinal microbiota. | Palmer C, Bik EM, DiGiulio DB, Relman DA, Brown PO. | PLoS Biol | 10.1371/journal.pbio.0050177 | 2007 | |
| Prolonged febrile illness: Infective endocarditis in adult without risk factors. | Ata H. | Am J Emerg Med | 10.1016/j.ajem.2025.08.046 | 2025 | | |
| Nasal Delivery of Haemophilus haemolyticus Is Safe, Reduces Influenza Severity, and Prevents Development of Otitis Media in Mice. | Scott N, Martinovich KM, Granland CM, Seppanen EJ, Tjiam MC, de Gier C, Foo E, Short KR, Chew KY, Fulurija A, Strickland DH, Richmond PC, Kirkham LS. | J Infect Dis | 10.1093/infdis/jiae069 | 2024 | | |
| High Prevalence of Non-typeable Haemophilus influenzae and Haemophilus haemolyticus Among Vaccinated Children with Community-Acquired Pneumonia in Vietnam. | Tran XD, Hoang VT, Dao TL, Marty P, Gautret P. | J Epidemiol Glob Health | 10.1007/s44197-024-00195-8 | 2024 | | |
| Is systemic inflammation a missing link between oral microbiome and oral squamous cell carcinoma? Results from multi-omics integration analyses. | Yan L, He B, Deng Q, Qiu Y, Lin L, Shi B, Wang J, Chen F. | J Oral Microbiol | 10.1080/20002297.2025.2574326 | 2025 | | |
| Non-invasive early detection on esophageal squamous cell carcinoma and precancerous lesions by microbial biomarkers combining epidemiological factors in China. | Li M, Shao D, Fan Z, Qin J, Xu J, Huang Q, Li X, Hua Z, Li J, Hao C, Wei W, Abnet CC. | J Gastroenterol | 10.1007/s00535-024-02117-8 | 2024 | | |
| Contribution of amino acid substitutions in ParE to quinolone resistance in Haemophilus haemolyticus revealed through a horizontal transfer assay using Haemophilus influenzae. | Tanaka E, Wajima T, Nakaminami H, Uchiya KI. | J Antimicrob Chemother | 10.1093/jac/dkad074 | 2023 | | |
| Exploring the role of gut microbiota in rheumatoid arthritis: the effects of diet and drug supplementation. | Genc DE, Ozbek O, Ulgen KO. | BMC Rheumatol | 10.1186/s41927-025-00541-8 | 2025 | | |
| Differences in sputum microbiota based on cure status of patients with nontuberculous mycobacterial pulmonary disease. | Kang N, Kim SY, Kim DH, Jhun BW. | Korean J Intern Med | 10.3904/kjim.2024.209 | 2025 | | |
| Phylogeny | Gastric Microbiota Associated with Gastric Precancerous Lesions in Helicobacter pylori-Negative Patients. | Kim HN, Kim MJ, Jacobs JP, Yang HJ. | Microorganisms | 10.3390/microorganisms13010081 | 2025 | |
| Nasal microbiota predictors for methicillin resistant Staphylococcus colonization in critically ill children. | Zani K, Hobeika J, Sun Y, Kohler C, Cherian A, Fields T, Jia Q, Tang L, Hysmith ND, Margolis EB. | PLoS One | 10.1371/journal.pone.0316460 | 2025 | | |
| Genetics | Genome Characterisation of Invasive Haemophilus influenzae in Pregnancy: The Noticeable Placental Tissue Tropism Is Distributed across the Species Rather Than Linked with Capsulation or Particular Clones. | Norskov-Lauritsen N, Mohey R, Hansen DS, Duus L, Khalil MR, Wilfred SJ, Nielsen SY. | Pathogens | 10.3390/pathogens12111345 | 2023 | |
| Methodological establishment and diagnostic value of a multiplex fluorescent PCR assay for the detection of three fastidious respiratory pathogens. | Shi J, Zhu Y, Chen S, Shan X, Bo L, Shen K, Chen K. | PLoS One | 10.1371/journal.pone.0328651 | 2025 | | |
| Characteristics of tongue images and tongue coating bacteria in patients with colorectal cancer. | Zheng W, Yinhang W, Jian C, Congjian J, Zhanbo Q, Nianga JM, Wang L, Zefeng W, Jiaqun H, Xiaojian Y, Shujing Y, Jinlong D, Jiang L, Shuwen H. | BMC Microbiol | 10.1186/s12866-025-04014-3 | 2025 | | |
| Genetics | Metagenomic Analysis of the Buccal Microbiome by Nanopore Sequencing Reveals Structural Differences in the Microbiome of a Patient with Molar Incisor Hypomineralization (MIH) Compared to a Healthy Child-Case Study. | Tynior W, Klosek M, Salatino S, Cuber P, Hudy D, Nalecz D, Chan YT, Gustave C, Strzelczyk JK. | Int J Mol Sci | 10.3390/ijms252313143 | 2024 | |
| Characteristics of pathogenic microbes in lung microenvironment of lung cancer patients without respiratory infection. | Zhang M, Zhang Y, Han Y, Zhao X, Sun Y. | J BUON | 2021 | | ||
| Heme sequestration by hemophilin from Haemophilus haemolyticus reduces respiratory tract colonization and infection with non-typeable Haemophilus influenzae. | Fulte S, Atto B, McCarty A, Horn KJ, Redzic JS, Eisenmesser E, Yang M, Marsh RL, Tristram S, Clark SE. | mSphere | 10.1128/msphere.00006-24 | 2024 | | |
| Genetics | Meta-omics reveals subgingival plaque reconstruction dynamics. | Zhou F, Wu Y, Ren B, Liu Y, Luo K, Li Q, Huang F, Peng X, Li Y, Su Z, Li J. | J Oral Microbiol | 10.1080/20002297.2025.2569528 | 2025 | |
| SqueezeCall: nanopore basecalling using a Squeezeformer network. | Zhu Z. | GigaByte | 10.46471/gigabyte.148 | 2025 | | |
| Proteome | Metaproteomics associated with severe early childhood caries highlights the differences in salivary proteins. | Ruan W, Sun C, Gao Q, Shrivastava N. | Arch Oral Biol | 10.1016/j.archoralbio.2021.105220 | 2021 | |
| Phylogeny | Longitudinal Analysis of Nasopharyngeal Microbial Risk Markers for Fatal Acute Febrile Illness in a Zambian Birth Cohort. | Odom AR, Anderson J, Gill CJ, Pieciak R, Ismail A, MacLeod WB, Johnson WE, Lapidot R. | J Infect Dis | 10.1093/infdis/jiaf292 | 2025 | |
| High-Level Quinolone-Resistant Haemophilus haemolyticus in Pediatric Patient with No History of Quinolone Exposure. | Tanaka E, Hirai Y, Wajima T, Ishida Y, Kawamura Y, Nakaminami H. | Emerg Infect Dis | 10.3201/eid2801.210248 | 2022 | | |
| Metabolism | A heme-binding protein produced by Haemophilus haemolyticus inhibits non-typeable Haemophilus influenzae. | Latham RD, Torrado M, Atto B, Walshe JL, Wilson R, Guss JM, Mackay JP, Tristram S, Gell DA. | Mol Microbiol | 10.1111/mmi.14426 | 2020 | |
| Analysis of Pathogenic Bacteria and Drug Resistance Among Girls with Bacterial Vaginitis. | Zhang M, Liu J, Pan YC, Liu HL, Shu J, Wu XM, Yang Y. | Infect Drug Resist | 10.2147/idr.s403304 | 2023 | | |
| Estimated Nucleotide Reconstruction Quality Symbols of Basecalling Tools for Oxford Nanopore Sequencing. | Kusmirek W. | Sensors (Basel) | 10.3390/s23156787 | 2023 | | |
| Pathogenicity | Clinical characteristics of bacteremia caused by Haemophilus and Aggregatibacter species and antimicrobial susceptibilities of the isolates. | Chien YC, Huang YT, Liao CH, Chien JY, Hsueh PR. | J Microbiol Immunol Infect | 10.1016/j.jmii.2020.12.002 | 2021 | |
| Haemophilus haemolyticus: an atypical pathogen of septic arthritis of the knee joint. | Weber S, Kabelitz M, Kabelitz N, Schoenborn V. | J Surg Case Rep | 10.1093/jscr/rjaa318 | 2020 | | |
| Multi-omics analysis reveals the key factors involved in the severity of the Alzheimer's disease. | Meng L, Jin H, Yulug B, Altay O, Li X, Hanoglu L, Cankaya S, Coskun E, Idil E, Nogaylar R, Ozsimsek A, Shoaie S, Turkez H, Nielsen J, Zhang C, Boren J, Uhlen M, Mardinoglu A. | Alzheimers Res Ther | 10.1186/s13195-024-01578-6 | 2024 | | |
| Complete Whole-Genome Sequence of Haemophilus haemolyticus NCTC 10839. | Fazal MA, Alexander S, Grayson NE, Deheer-Graham A, Oliver K, Holroyd N, Parkhill J, Russell JE. | Microbiol Resour Announc | 10.1128/mra.00232-19 | 2019 | | |
| The Role of Bacterial Etiology in the Tear Duct Infections Secondary to Congenital Nasolacrimal Duct Obstructions. | Bekmez S, Eris E, Altan EV, Dursun V. | J Craniofac Surg | 10.1097/scs.0000000000005798 | 2019 | | |
| Potent inhibitors of the human RNA ligase Rlig1 highlights its role in RNA integrity maintenance under oxidative cellular stress. | Schlor LA, Peussner M, Muller S, Marx A. | Chem Sci | 10.1039/d4sc06542e | 2025 | | |
| Genetics | Multiple interspecies recombination events documented by whole-genome sequencing in multidrug-resistant Haemophilus influenzae clinical isolates. | Michel C, Argudin MA, Wautier M, Echahidi F, Prevost B, Vandenberg O, Martiny D, Hallin M. | Access Microbiol | 10.1099/acmi.0.000649.v3 | 2024 | |
| Draft Genome Sequence of Haemophilus haemolyticus Strain 16/010 O, Isolated from a Sputum Sample from a Cystic Fibrosis Patient. | Fluit AC, Bayjanov JR, Tunney M, Elborn JS, Rogers MRC, Schurch AC, Ekkelenkamp MB. | Microbiol Resour Announc | 10.1128/mra.00243-19 | 2019 | | |
| Fecal Microbiota Transplantation Induces Sustained Gut Microbiome Changes in Pediatric Ulcerative Colitis: A Combined Randomized and Open-Label Study. | Le J, Hakimjavadi H, Parsana R, Chamala S, Michail S. | Gastro Hep Adv | 10.1016/j.gastha.2025.100741 | 2025 | | |
| Oropharyngeal Carriage of hpl-Containing Haemophilus haemolyticus Predicts Lower Prevalence and Density of NTHi Colonisation in Healthy Adults. | Atto B, Kunde D, Gell DA, Tristram S. | Pathogens | 10.3390/pathogens10050577 | 2021 | | |
| Perinatal factors influencing the earliest establishment of the infant microbiome. | Linehan K, Healy K, Hurley E, O'Shea CA, Ryan CA, Ross RP, Stanton C, Dempsey EM. | Microbiome Res Rep | 10.20517/mrr.2024.92 | 2025 | | |
| First Study on profiling of gut microbiome in wild and captive Sumatran orangutans (Pongo abelii). | Safika S, Indrawati A, Afiff U, Hastuti YT, Zureni Z, Jati AP. | Vet World | 10.14202/vetworld.2023.717-727 | 2023 | | |
| Phylogeny | Simultaneous identification of Haemophilus influenzae and Haemophilus haemolyticus using real-time PCR. | Price EP, Harris TM, Spargo J, Nosworthy E, Beissbarth J, Chang AB, Smith-Vaughan HC, Sarovich DS. | Future Microbiol | 10.2217/fmb-2016-0215 | 2017 | |
| Genetics | Spatial ecology of Haemophilus and Aggregatibacter in the human oral cavity. | Giacomini JJ, Torres-Morales J, Tang J, Dewhirst FE, Borisy GG, Mark Welch JL. | Microbiol Spectr | 10.1128/spectrum.04017-23 | 2024 | |
| Phylogeny | Classification of genera of Pasteurellaceae using conserved predicted protein sequences. | Christensen H, Bisgaard M. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002860 | 2018 | |
| Metabolism | An isolate of Haemophilus haemolyticus produces a bacteriocin-like substance that inhibits the growth of nontypeable Haemophilus influenzae. | Latham RD, Gell DA, Fairbairn RL, Lyons AB, Shukla SD, Cho KY, Jones DA, Harkness NM, Tristram SG. | Int J Antimicrob Agents | 10.1016/j.ijantimicag.2016.12.010 | 2017 | |
| Endometrial microbiota profile in in-vitro fertilization (IVF) patients by culturomics-based analysis. | Cariati F, Carotenuto C, Bagnulo F, Pacella D, Marrone V, Paolillo R, Catania MR, Di Girolamo R, Conforti A, Strina I, Alviggi C. | Front Endocrinol (Lausanne) | 10.3389/fendo.2023.1204729 | 2023 | | |
| An Unusual Bacterial Etiology of Fournier's Gangrene in an Immunocompetent Patient. | Khan A, Gidda H, Murphy N, Alshanqeeti S, Singh I, Wasay A, Haseeb M. | Cureus | 10.7759/cureus.26616 | 2022 | | |
| A randomised, double-blind clinical study into the effect of zinc citrate trihydrate toothpaste on oral plaque microbiome ecology and function. | Adams SE, Cawley AK, Arnold D, Hoptroff MJ, Slomka V, Matheson JR, Marriott RE, Gemmell MR, Marsh PD. | Sci Rep | 10.1038/s41598-025-92545-0 | 2025 | | |
| Insights into the role of the respiratory tract microbiome in defense against bacterial pneumonia. | Drigot ZG, Clark SE. | Curr Opin Microbiol | 10.1016/j.mib.2024.102428 | 2024 | | |
| Genetics | Comparison of the first whole genome sequence of 'Haemophilus quentini' with two new strains of 'Haemophilus quentini' and other species of Haemophilus. | Hubbard ATM, Davies SEW, Baxter L, Thompson S, Collery MM, Hand DC, Thomas DJI, Fink CG. | Genome | 10.1139/gen-2017-0195 | 2018 | |
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| Phylogeny | Lung microbiota features of stage III and IV non-small cell lung cancer patients without lung infection. | Zhang M, Zhang Y, Han Y, Zhao X, Sun Y. | Transl Cancer Res | 10.21037/tcr-22-92 | 2022 | |
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| A Surface Exposed, Two-Domain Lipoprotein Cargo of a Type XI Secretion System Promotes Colonization of Host Intestinal Epithelia Expressing Glycans. | Grossman AS, Escobar CA, Mans EJ, Mucci NC, Mauer TJ, Jones KA, Moore CC, Abraham PE, Hettich RL, Schneider L, Campagna SR, Forest KT, Goodrich-Blair H. | Front Microbiol | 10.3389/fmicb.2022.800366 | 2022 | | |
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| Recent Perspectives on Gene-Microbe Interactions Determining Predisposition to Otitis Media. | Mittal R, Sanchez-Luege SV, Wagner SM, Yan D, Liu XZ. | Front Genet | 10.3389/fgene.2019.01230 | 2019 | | |
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| Density, Serotype Diversity, and Fitness of Streptococcus pneumoniae in Upper Respiratory Tract Cocolonization With Nontypeable Haemophilus influenzae. | Lewnard JA, Huppert A, Givon-Lavi N, Pettigrew MM, Regev-Yochay G, Dagan R, Weinberger DM. | J Infect Dis | 10.1093/infdis/jiw381 | 2016 | | |
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| Enzymology | Direct 16S rRNA gene sequencing from clinical specimens, with special focus on polybacterial samples and interpretation of mixed DNA chromatograms. | Kommedal O, Kvello K, Skjastad R, Langeland N, Wiker HG. | J Clin Microbiol | 10.1128/jcm.00973-09 | 2009 | |
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| Phylogeny | Identification of Haemophilus influenzae Type b Isolates by Use of Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry. | Mansson V, Resman F, Kostrzewa M, Nilson B, Riesbeck K. | J Clin Microbiol | 10.1128/jcm.00137-15 | 2015 | |
| Characterization of the nasopharyngeal microbiota in health and during rhinovirus challenge. | Allen EK, Koeppel AF, Hendley JO, Turner SD, Winther B, Sale MM. | Microbiome | 10.1186/2049-2618-2-22 | 2014 | | |
| Phenotype | In-silico prediction and deep-DNA sequencing validation indicate phase variation in 115 Neisseria meningitidis genes. | Siena E, D'Aurizio R, Riley D, Tettelin H, Guidotti S, Torricelli G, Moxon ER, Medini D. | BMC Genomics | 10.1186/s12864-016-3185-1 | 2016 | |
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| Upper airways microbiota in antibiotic-naïve wheezing and healthy infants from the tropics of rural Ecuador. | Cardenas PA, Cooper PJ, Cox MJ, Chico M, Arias C, Moffatt MF, Cookson WO. | PLoS One | 10.1371/journal.pone.0046803 | 2012 | | |
| Metabolism | Zebularine: a novel DNA methylation inhibitor that forms a covalent complex with DNA methyltransferases. | Zhou L, Cheng X, Connolly BA, Dickman MJ, Hurd PJ, Hornby DP. | J Mol Biol | 10.1016/s0022-2836(02)00676-9 | 2002 | |
| Pathogenicity | Panel 7 - Pathogenesis of otitis media - a review of the literature between 2015 and 2019. | Thornton RB, Hakansson A, Hood DW, Nokso-Koivisto J, Preciado D, Riesbeck K, Richmond PC, Su YC, Swords WE, Brockman KL. | Int J Pediatr Otorhinolaryngol | 10.1016/j.ijporl.2019.109838 | 2020 | |
| Phylogeny | Phylogenetic relatedness and diversity of non-typable Haemophilus influenzae in the nasopharynx and middle ear fluid of children with acute otitis media. | Kaur R, Chang A, Xu Q, Casey JR, Pichichero ME. | J Med Microbiol | 10.1099/jmm.0.034041-0 | 2011 | |
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| Pathogenicity | Discovery and Contribution of Nontypeable Haemophilus influenzae NTHI1441 to Human Respiratory Epithelial Cell Invasion. | Ahearn CP, Kirkham C, Chaves LD, Kong Y, Pettigrew MM, Murphy TF. | Infect Immun | 10.1128/iai.00462-19 | 2019 | |
| Cross-reactions between Haemophilus influenzae and nineteen other bacterial species. | Schiotz PO, Hoiby N, Hertz JB. | Acta Pathol Microbiol Scand B | 10.1111/j.1699-0463.1979.tb02448.x | 1979 | | |
| Radiometric detection of Haemophilus in simulated blood cultures. | Sadowski GE, Robertson RG. | Am J Clin Pathol | 10.1093/ajcp/71.2.190 | 1979 | | |
| Population effect of 10-valent pneumococcal conjugate vaccine on nasopharyngeal carriage of Streptococcus pneumoniae and non-typeable Haemophilus influenzae in Kilifi, Kenya: findings from cross-sectional carriage studies. | Hammitt LL, Akech DO, Morpeth SC, Karani A, Kihuha N, Nyongesa S, Bwanaali T, Mumbo E, Kamau T, Sharif SK, Scott JA. | Lancet Glob Health | 10.1016/s2214-109x(14)70224-4 | 2014 | | |
| Enzymology | Comparison of the RIM-H rapid identification kit with conventional tests for the identification of Haemophilus spp. | Palladino S, Leahy BJ, Newall TL. | J Clin Microbiol | 10.1128/jcm.28.8.1862-1863.1990 | 1990 | |
| Phylogeny | Fastidious Gram-Negatives: Identification by the Vitek 2 Neisseria-Haemophilus Card and by Partial 16S rRNA Gene Sequencing Analysis. | Sonksen UW, Christensen JJ, Nielsen L, Hesselbjerg A, Hansen DS, Bruun B. | Open Microbiol J | 10.2174/1874285801004010123 | 2010 | |
| Multicenter Evaluation of the BioFire FilmArray Pneumonia/Pneumonia Plus Panel for Detection and Quantification of Agents of Lower Respiratory Tract Infection. | Murphy CN, Fowler R, Balada-Llasat JM, Carroll A, Stone H, Akerele O, Buchan B, Windham S, Hopp A, Ronen S, Relich RF, Buckner R, Warren DA, Humphries R, Campeau S, Huse H, Chandrasekaran S, Leber A, Everhart K, Harrington A, Kwong C, Bonwit A, Dien Bard J, Naccache S, Zimmerman C, Jones B, Rindlisbacher C, Buccambuso M, Clark A, Rogatcheva M, Graue C, Bourzac KM. | J Clin Microbiol | 10.1128/jcm.00128-20 | 2020 | | |
| Phylogeny | Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities. | Kent AD, Smith DJ, Benson BJ, Triplett EW. | Appl Environ Microbiol | 10.1128/aem.69.11.6768-6776.2003 | 2003 | |
| Enzymology | Metabolic versatility in Haemophilus influenzae: a metabolomic and genomic analysis. | Othman DS, Schirra H, McEwan AG, Kappler U. | Front Microbiol | 10.3389/fmicb.2014.00069 | 2014 | |
| Analysis of nontypeable haemophilus influenzae phase-variable genes during experimental human nasopharyngeal colonization. | Poole J, Foster E, Chaloner K, Hunt J, Jennings MP, Bair T, Knudtson K, Christensen E, Munson RS, Winokur PL, Apicella MA. | J Infect Dis | 10.1093/infdis/jit240 | 2013 | | |
| Immunogenicity, impact on carriage and reactogenicity of 10-valent pneumococcal non-typeable Haemophilus influenzae protein D conjugate vaccine in Kenyan children aged 1-4 years: a randomized controlled trial. | Hammitt LL, Ojal J, Bashraheil M, Morpeth SC, Karani A, Habib A, Borys D, Goldblatt D, Scott JA. | PLoS One | 10.1371/journal.pone.0085459 | 2014 | | |
| Enzymology | Nontypeable Haemophilus influenzae carbonic anhydrase is important for environmental and intracellular survival. | Langereis JD, Zomer A, Stunnenberg HG, Burghout P, Hermans PW. | J Bacteriol | 10.1128/jb.01870-12 | 2013 | |
| Pathogenicity | Increase of beta-lactam-resistant invasive Haemophilus influenzae in Sweden, 1997 to 2010. | Resman F, Ristovski M, Forsgren A, Kaijser B, Kronvall G, Medstrand P, Melander E, Odenholt I, Riesbeck K. | Antimicrob Agents Chemother | 10.1128/aac.00415-12 | 2012 | |
| Pneumococcal conjugate vaccines PREVenar13 and SynflorIX in sequence or alone in high-risk Indigenous infants (PREV-IX_COMBO): protocol of a randomised controlled trial. | Leach AJ, Mulholland EK, Santosham M, Torzillo PJ, Brown NJ, McIntyre P, Smith-Vaughan H, Skull S, Balloch A, Andrews R, Carapetis J, McDonnell J, Krause V, Morris PS. | BMJ Open | 10.1136/bmjopen-2014-007247 | 2015 | | |
| Enzymology | Nasopharyngeal Haemophilus influenzae carriage in Japanese children attending day-care centers. | Hashida K, Shiomori T, Hohchi N, Muratani T, Mori T, Udaka T, Suzuki H. | J Clin Microbiol | 10.1128/jcm.01726-07 | 2008 | |
| Metabolism | Inactivation of Haemophilus influenzae lipopolysaccharide biosynthesis genes interferes with outer membrane localization of the hap autotransporter. | Spahich NA, Hood DW, Moxon ER, St Geme JW. | J Bacteriol | 10.1128/jb.06316-11 | 2012 | |
| Identification of new genetic regions more prevalent in nontypeable Haemophilus influenzae otitis media strains than in throat strains. | Xie J, Juliao PC, Gilsdorf JR, Ghosh D, Patel M, Marrs CF. | J Clin Microbiol | 10.1128/jcm.01331-06 | 2006 | | |
| Metabolism | Histidine auxotrophy in commensal and disease-causing nontypeable Haemophilus influenzae. | Juliao PC, Marrs CF, Xie J, Gilsdorf JR. | J Bacteriol | 10.1128/jb.00146-07 | 2007 | |
| Phylogeny | Use of bexB to detect the capsule locus in Haemophilus influenzae. | Davis GS, Sandstedt SA, Patel M, Marrs CF, Gilsdorf JR. | J Clin Microbiol | 10.1128/jcm.02509-10 | 2011 | |
| Hypertension and cognitive decline in rural elderly Chinese. | Gao S, Jin Y, Unverzagt FW, Liang C, Hall KS, Ma F, Murrell JR, Cheng Y, Matesan J, Bian J, Li P, Hendrie HC. | J Am Geriatr Soc | 10.1111/j.1532-5415.2009.02267.x | 2009 | | |
| Pathogenicity | Genetic characteristics and clonal dissemination of beta-lactamase-negative ampicillin-resistant Haemophilus influenzae strains isolated from the upper respiratory tract of patients in Japan. | Hotomi M, Fujihara K, Billal DS, Suzuki K, Nishimura T, Baba S, Yamanaka N. | Antimicrob Agents Chemother | 10.1128/aac.00422-07 | 2007 | |
| Genetics | Genome of Mycoplasma arthritidis. | Dybvig K, Zuhua C, Lao P, Jordan DS, French CT, Tu AH, Loraine AE. | Infect Immun | 10.1128/iai.00516-08 | 2008 | |
| Effect of amoxicillin use on oral microbiota in young children. | Ready D, Lancaster H, Qureshi F, Bedi R, Mullany P, Wilson M. | Antimicrob Agents Chemother | 10.1128/aac.48.8.2883-2887.2004 | 2004 | | |
| Lower airway colonization and inflammatory response in COPD: a focus on Haemophilus influenzae. | Finney LJ, Ritchie A, Pollard E, Johnston SL, Mallia P. | Int J Chron Obstruct Pulmon Dis | 10.2147/copd.s54477 | 2014 | | |
| Metabolism | Probing a rate-limiting step by mutational perturbation of AdoMet binding in the HhaI methyltransferase. | Merkiene E, Klimasauskas S. | Nucleic Acids Res | 10.1093/nar/gki175 | 2005 | |
| Genetics | A core human microbiome as viewed through 16S rRNA sequence clusters. | Huse SM, Ye Y, Zhou Y, Fodor AA. | PLoS One | 10.1371/journal.pone.0034242 | 2012 | |
| Identification of DNA-binding proteins using structural, electrostatic and evolutionary features. | Nimrod G, Szilagyi A, Leslie C, Ben-Tal N. | J Mol Biol | 10.1016/j.jmb.2009.02.023 | 2009 | | |
| Metabolism | Haemophilus parainfluenzae expresses diverse lipopolysaccharide O-antigens using ABC transporter and Wzy polymerase-dependent mechanisms. | Young RE, Twelkmeyer B, Vitiazeva V, Power PM, Schweda EK, Hood DW. | Int J Med Microbiol | 10.1016/j.ijmm.2013.08.006 | 2013 | |
| Metabolism | HhaI methylase and restriction endonuclease as probes for B to Z DNA conformational changes in d(GCGC) sequences. | Zacharias W, Larson JE, Kilpatrick MW, Wells RD. | Nucleic Acids Res | 10.1093/nar/12.20.7677 | 1984 | |
| Enzymology | Cleavage map of bacteriophage phiX174 RF DNA by restriction enzymes. | Baas PD, van Heusden GP, Vereijken JM, Weisbeek PJ, Jansz HS. | Nucleic Acids Res | 10.1093/nar/3.8.1947 | 1976 | |
| Pathogenicity | Haemophilus influenzae lysate induces aspects of the chronic obstructive pulmonary disease phenotype. | Moghaddam SJ, Clement CG, De la Garza MM, Zou X, Travis EL, Young HW, Evans CM, Tuvim MJ, Dickey BF. | Am J Respir Cell Mol Biol | 10.1165/rcmb.2007-0366oc | 2008 | |
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| Enzymology | High detection rates of nucleic acids of a wide range of respiratory viruses in the nasopharynx and the middle ear of children with a history of recurrent acute otitis media. | Wiertsema SP, Chidlow GR, Kirkham LA, Corscadden KJ, Mowe EN, Vijayasekaran S, Coates HL, Harnett GB, Richmond PC. | J Med Virol | 10.1002/jmv.22221 | 2011 | |
| Development of the polymerase chain reaction for diagnosis of chancroid. | Chui L, Albritton W, Paster B, Maclean I, Marusyk R. | J Clin Microbiol | 10.1128/jcm.31.3.659-664.1993 | 1993 | | |
| Phylogeny | Use of real-time PCR to resolve slide agglutination discrepancies in serogroup identification of Neisseria meningitidis. | Mothershed EA, Sacchi CT, Whitney AM, Barnett GA, Ajello GW, Schmink S, Mayer LW, Phelan M, Taylor TH, Bernhardt SA, Rosenstein NE, Popovic T. | J Clin Microbiol | 10.1128/jcm.42.1.320-328.2004 | 2004 | |
| Mutational analysis of conserved residues in HhaI DNA methyltransferase. | Sankpal UT, Rao DN. | Nucleic Acids Res | 10.1093/nar/gkf380 | 2002 | | |
| Panel 5: Microbiology and immunology panel. | Murphy TF, Chonmaitree T, Barenkamp S, Kyd J, Nokso-Koivisto J, Patel JA, Heikkinen T, Yamanaka N, Ogra P, Swords WE, Sih T, Pettigrew MM. | Otolaryngol Head Neck Surg | 10.1177/0194599812459636 | 2013 | | |
| Metabolism | Characterisation of site-biased DNA methyltransferases: specificity, affinity and subsite relationships. | McNamara AR, Hurd PJ, Smith AE, Ford KG. | Nucleic Acids Res | 10.1093/nar/gkf501 | 2002 | |
| Genetics | Genome stability of Lyme disease spirochetes: comparative genomics of Borrelia burgdorferi plasmids. | Casjens SR, Mongodin EF, Qiu WG, Luft BJ, Schutzer SE, Gilcrease EB, Huang WM, Vujadinovic M, Aron JK, Vargas LC, Freeman S, Radune D, Weidman JF, Dimitrov GI, Khouri HM, Sosa JE, Halpin RA, Dunn JJ, Fraser CM. | PLoS One | 10.1371/journal.pone.0033280 | 2012 | |
| Compilation of small ribosomal subunit RNA structures. | Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R. | Nucleic Acids Res | 10.1093/nar/21.13.3025 | 1993 | | |
| Pathogenicity | Role of inter-species recombination of the ftsI gene in the dissemination of altered penicillin-binding-protein-3-mediated resistance in Haemophilus influenzae and Haemophilus haemolyticus. | Witherden EA, Bajanca-Lavado MP, Tristram SG, Nunes A | J Antimicrob Chemother | 10.1093/jac/dku022 | 2014 | |
| Pathogenicity | Prevalence and mechanisms of beta-lactam resistance in Haemophilus haemolyticus. | Witherden EA, Tristram SG | J Antimicrob Chemother | 10.1093/jac/dks532 | 2013 | |
| Phylogeny | Whole-Genome Sequencing of Aggregatibacter Species Isolated from Human Clinical Specimens and Description of Aggregatibacter kilianii sp. nov. | Murra M, Lutzen L, Barut A, Zbinden R, Lund M, Villesen P, Norskov-Lauritsen N. | J Clin Microbiol | 10.1128/jcm.00053-18 | 2018 | |
| Phylogeny | Haemophilus seminalis sp. nov., isolated from human semen. | Zheng ML, Li LH, Liu B, Lin YB, Zhang XT, Chen C, Qu PH, Zeng J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004074 | 2020 | |
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https://doi.org/10.13145/bacdive135242.20251217.10
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BacDive in 2025: the core database for prokaryotic strain data
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