Name: Psychromonas boydii 174
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13522

Type strain:

Species: Psychromonas boydii

Strain Designation: 174

Culture col. no.: DSM 17665, CCM 7498

Strain history: <- P. Kämpfer, Univ. Giessen, Germany; 174 <- J. T. Staley, Univ. of Washington, Seattle, USA

NCBI tax ID(s): 632140 (species)

SI-ID 401981

DSM 17665

Section

Psychromonas boydii 174 is a facultative anaerobe, psychrophilic, Gram-negative bacterium that was isolated from Arctic 1.8 m sea-ice core, about 40–60 cm from the ice/water interface.

Gram-negative
rod-shaped
facultative anaerobe
psychrophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Psychromonadaceae*
	Genus	*Psychromonas*
	Species	**Psychromonas boydii**
	Full Scientific Name (LPSN)	Psychromonas boydii Auman et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29167]	Gram stain	negative

[Ref.: #29167]	Cell length	14 µm

[Ref.: #29167]	Cell shape	rod-shaped

[Ref.: #29167]	Motility	no

[Ref.: #29167]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7113]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7113]

Culture medium growth

[Ref.: #7113]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7113]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7113]			growth	12 °C
[Ref.: #29167]			growth	0-10 °C

[Ref.: #7113]	Temperature range	psychrophilic
[Ref.: #29167]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #29167]			optimum	6.95
[Ref.: #29167]			growth	6.5-7.4

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29167]

Oxygen tolerance

facultative anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29167]		NaCl		growth	02-18	%
[Ref.: #29167]		NaCl		optimum	3.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29167]	acetate ChEBI	+	carbon source
[Ref.: #29167]	aspartate ChEBI	+	carbon source
[Ref.: #29167]	cellobiose ChEBI	+	carbon source
[Ref.: #29167]	citrate ChEBI	+	carbon source
[Ref.: #29167]	fructose ChEBI	+	carbon source
[Ref.: #29167]	glucose ChEBI	+	carbon source
[Ref.: #29167]	glutamate ChEBI	+	carbon source
[Ref.: #29167]	lactate ChEBI	+	carbon source
[Ref.: #29167]	mannitol ChEBI	+	carbon source
[Ref.: #29167]	mannose ChEBI	+	carbon source
[Ref.: #29167]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #29167]	nitrate ChEBI	+	reduction
[Ref.: #29167]	pyruvate ChEBI	+	carbon source
[Ref.: #29167]	ribose ChEBI	+	carbon source
[Ref.: #29167]	salicin ChEBI	+	carbon source
[Ref.: #29167]	sucrose ChEBI	+	carbon source
[Ref.: #29167]	trehalose ChEBI	+	carbon source
[Ref.: #29167]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29167]		catalase	+	1.11.1.6
[Ref.: #29167]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7113]	Sample type/isolated from	Arctic 1.8 m sea-ice core, about 40–60 cm from the ice/water interface
[Ref.: #7113]	Geographic location (country and/or sea, region)	Alaska, Point Barrow, open water site
[Ref.: #7113]	Country	USA
[Ref.: #7113]	Country ISO 3 Code	USA
[Ref.: #7113]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Ice
#Condition	#Psychrophilic (<10°C)	-
#Climate	#Cold	#Polar

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ822615 (>99% sequence identity) for Psychromonas ingrahamii from Microbeatlas

Aquatic Samples	14865
Soil Samples	510
Animal Samples	1575
Plant Samples	91
Total Samples	17041

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7113]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7113]	Psychromonas boydii strain 174 16S ribosomal RNA gene, partial sequence	FJ822615	1415	ENA	632140 tax ID

[Ref.: #7113]	GC-content	40 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29167]	GC-content	40 mol%

Availability in culture collections External links

[Ref.: #7113]

Culture collection no.

DSM 17665, CCM 7498

[Ref.: #82713]

SI-ID 401981

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Psychromonas boydii sp. nov., a gas-vacuolate, psychrophilic bacterium isolated from an Arctic sea-ice core.	Auman AJ, Breezee JL, Gosink JJ, Schumann P, Barnes CR, Kampfer P, Staley JT	Int J Syst Evol Microbiol	10.1099/ijs.0.007773-0	2009	*

References

#7113

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17665

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29167

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25591 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#82713

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401981.1 )

#25591

IJSEM 84 2010 ( DOI 10.1099/ijs.0.007773-0 , PubMed 19648341 )

* These data were automatically processed and therefore are not curated

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