Name: Halobacillus faecis IGA7-4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1352

Type strain:

Species: Halobacillus faecis

Strain Designation: IGA7-4

Culture col. no.: DSM 21559, IAM 15427, KCTC 13121, MBIC 08268, JCM 23212, NBRC 103569

Strain history: IAM 15427 <-- S.-Y. An et al. IGA7-4.

NCBI tax ID(s): 360184 (species)

SI-ID 319374

IAM 15427, JCM 23212, KCTC 13121, NBRC 103569

Section

Halobacillus faecis IGA7-4 is an obligate aerobe, halophilic, spore-forming bacterium that forms circular colonies and was isolated from field soil in a mangrove area.

colony-forming
Gram-positive
rod-shaped
spore-forming
halophilic
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Halobacillus*
	Species	**Halobacillus faecis**
	Full Scientific Name (LPSN)	Halobacillus faecis An et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #22989]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #22989]	Cell length	2.4-3.4 µm

[Ref.: #22989]	Cell width	1.6-1.8 µm

[Ref.: #22989]	Cell shape	rod-shaped

[Ref.: #22989]	Motility	no
[Ref.: #69480]	Motility	yes Confidence in %97.411

[Ref.: #22989]	Colony color	orange
[Ref.: #22989]	Colony shape	circular
[Ref.: #22989]	Cultivation medium used	marine agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #15811]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #15811]

Culture medium composition

expand / minimize

[Ref.: #22989]

Culture medium

Marine agar (MA)

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Culture medium growth

		Temperature
[Ref.: #15811]	growth	30 °C
[Ref.: #22989]	growth	15.0-45.0 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #15811]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #22989]			growth	5.5-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #22989]

Oxygen tolerance

obligate aerobe

[Ref.: #22989]	Spore description	ellipsoidal and spherical,central position
[Ref.: #22989]	Type of spore	spore
[Ref.: #22989]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #22989]

Halophily / tolerance level

halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #22989]		NaCl		growth	<15.0	%(w/v)

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #22989]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #22989]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #22989]	amygdalin ChEBI	-	builds acid from
[Ref.: #22989]	arbutin ChEBI	-	builds acid from
[Ref.: #22989]	cellobiose ChEBI	-	builds acid from
[Ref.: #22989]	citrate ChEBI	-	growth
[Ref.: #22989]	D-arabinose ChEBI	-	builds acid from
[Ref.: #22989]	D-arabitol ChEBI	-	builds acid from
[Ref.: #22989]	D-fucose ChEBI	-	builds acid from
[Ref.: #22989]	D-lyxose ChEBI	-	builds acid from
[Ref.: #22989]	D-tagatose ChEBI	-	builds acid from
[Ref.: #22989]	D-xylose ChEBI	-	builds acid from
[Ref.: #22989]	erythritol ChEBI	-	builds acid from
[Ref.: #22989]	esculin ChEBI	+	builds acid from
[Ref.: #22989]	fructose ChEBI	+	builds acid from
[Ref.: #22989]	galactose ChEBI	+	builds acid from
[Ref.: #22989]	gentiobiose ChEBI	-	builds acid from
[Ref.: #22989]	gluconate ChEBI	-	builds acid from
[Ref.: #22989]	glucose ChEBI	+	builds acid from
[Ref.: #22989]	glycerol ChEBI	+	builds acid from
[Ref.: #22989]	glycogen ChEBI	+	builds acid from
[Ref.: #22989]	inulin ChEBI	-	builds acid from
[Ref.: #22989]	L-arabinose ChEBI	-	builds acid from
[Ref.: #22989]	L-arabitol ChEBI	-	builds acid from
[Ref.: #22989]	L-fucose ChEBI	-	builds acid from
[Ref.: #22989]	L-xylose ChEBI	-	builds acid from
[Ref.: #22989]	lactose ChEBI	-	builds acid from
[Ref.: #22989]	maltose ChEBI	+	builds acid from
[Ref.: #22989]	mannitol ChEBI	+	builds acid from
[Ref.: #22989]	melezitose ChEBI	-	builds acid from
[Ref.: #22989]	melibiose ChEBI	-	builds acid from
[Ref.: #22989]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #22989]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #22989]	myo-inositol ChEBI	-	builds acid from
[Ref.: #22989]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #22989]	nitrate ChEBI	-	reduction
[Ref.: #22989]	nitrite ChEBI	-	reduction
[Ref.: #22989]	raffinose ChEBI	-	builds acid from
[Ref.: #22989]	ribitol ChEBI	-	builds acid from
[Ref.: #22989]	ribose ChEBI	+	builds acid from
[Ref.: #22989]	salicin ChEBI	-	builds acid from
[Ref.: #22989]	sorbitol ChEBI	-	builds acid from
[Ref.: #22989]	starch ChEBI	+	builds acid from
[Ref.: #22989]	sucrose ChEBI	+	builds acid from
[Ref.: #22989]	trehalose ChEBI	+	builds acid from
[Ref.: #22989]	turanose ChEBI	-	builds acid from
[Ref.: #22989]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #22989]	acetoin ChEBI	no
[Ref.: #22989]	hydrogen sulfide ChEBI	no
[Ref.: #22989]	indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #22989]	acid phosphatase	+	3.1.3.2
[Ref.: #22989]	alkaline phosphatase	+	3.1.3.1
[Ref.: #22989]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #22989]	alpha-fucosidase	-	3.2.1.51
[Ref.: #22989]	alpha-glucosidase	+	3.2.1.20
[Ref.: #22989]	alpha-mannosidase	-	3.2.1.24
[Ref.: #22989]	arginine dihydrolase	-	3.5.3.6
[Ref.: #22989]	beta-galactosidase	+	3.2.1.23
[Ref.: #22989]	beta-glucosidase	-	3.2.1.21
[Ref.: #22989]	beta-glucuronidase	-	3.2.1.31
[Ref.: #22989]	catalase	+	1.11.1.6
[Ref.: #22989]	cystine arylamidase	-	3.4.11.3
[Ref.: #22989]	cytochrome oxidase	-	1.9.3.1
[Ref.: #22989]	esterase (C 4)	-
[Ref.: #22989]	esterase lipase (C 8)	+
[Ref.: #22989]	gelatinase	+
[Ref.: #22989]	leucine arylamidase	-	3.4.11.1
[Ref.: #22989]	lipase (C 14)	-
[Ref.: #22989]	lysine decarboxylase	-	4.1.1.18
[Ref.: #22989]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #22989]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #22989]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #22989]	trypsin	-	3.4.21.4
[Ref.: #22989]	tryptophan deaminase	-	4.1.99.1
[Ref.: #22989]	urease	-	3.5.1.5
[Ref.: #22989]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15811]	Sample type/isolated from	field soil in a mangrove area
[Ref.: #15811]	Geographic location (country and/or sea, region)	Ishigaki Island
[Ref.: #15811]	Country	Japan
[Ref.: #15811]	Country ISO 3 Code	JPN
[Ref.: #15811]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Field soil in a mangrove area in Ishigaki Island
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB243865 (>99% sequence identity) for Halobacillus from Microbeatlas

Aquatic Samples	2677
Soil Samples	2306
Animal Samples	590
Plant Samples	407
Total Samples	5980

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15811]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15811]	Halobacillus faecis rrs gene for 16S rRNA, partial sequence	AB243865	1517	ENA	360184 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halobacillus faecis NBRC 103569	GCA_007991335	contig	GenBank	360184 tax ID	*
[Ref.: #66792]	Halobacillus faecis strain NBRC 103569	360184.3	wgs	PATRIC	360184 tax ID	*

[Ref.: #15811]	GC-content	46.5 mol%
[Ref.: #22989]	GC-content	46.5 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halobacillus faecis strain NBRC 103569 PATRIC: 360184.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halobacillus faecis strain NBRC 103569 PATRIC: 360184.3
[Ref.: #69480]	gram-positive	yes	89.096	yes
[Ref.: #69480]	anaerobic	no	98.25	yes
[Ref.: #69480]	halophile	yes	94.415	yes
[Ref.: #69480]	spore-forming	yes	94.232	no
[Ref.: #69480]	glucose-util	yes	89.998	no
[Ref.: #69480]	flagellated	yes	84.341	yes
[Ref.: #69480]	thermophile	no	98.938	no
[Ref.: #69480]	aerobic	yes	95.047	yes
[Ref.: #69480]	motile	yes	87.649	yes
[Ref.: #69480]	glucose-ferment	no	92.012	no

Availability in culture collections External links

[Ref.: #15811]

Culture collection no.

DSM 21559, IAM 15427, KCTC 13121, MBIC 08268, JCM 23212, NBRC 103569

[Ref.: #71003]

SI-ID 319374

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halobacillus salicampi sp. nov., a moderately halophilic bacterium isolated from a solar saltern sediment.	Kim SJ, Lee JC, Han SI, Whang KS	Antonie Van Leeuwenhoek	10.1007/s10482-016-0672-y	2016	*
Phylogeny	Halobacillus faecis sp. nov., a spore-forming bacterium isolated from a mangrove area on Ishigaki Island, Japan.	An SY, Kanoh K, Kasai H, Goto K, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.64896-0	2007	*

References

#15811

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21559

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22989

Sun-Young An,Kaneo Kanoh,Hiroaki Kasai,Keiichi Goto,Akira Yokota: Halobacillus faecis sp. nov., a spore-forming bacterium isolated from a mangrove area on Ishigaki Island, Japan. IJSEM 57: 2476 - 2479 2007 ( DOI 10.1099/ijs.0.64896-0 , PubMed 17978203 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71003

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID319374.1 )

* These data were automatically processed and therefore are not curated

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Halobacillus faecis strain NBRC 103569

Halobacillus faecis strain NBRC 103569

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