Parvularcula bermudensis (CIP 108254, ATCC BAA-594, KCTC 12087)

Name: Parvularcula bermudensis (CIP 108254, ATCC BAA-594, KCTC 12087)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 135095

Type strain

Culture col. no. CIP 108254 ATCC BAA-594 KCTC 12087 HTCC 2503

NCBI tax ID(s) 208216

Special Collections KCTC CIP

History CIP <- 2004, J.C. Cho, Oregon state Univ., Corvallis, Oregon, USA: strain HTCC2503 CIP <- 2004, J.C. Cho, Oregon state Univ., Corvallis, Oregon, USA: strain HTCC2503

Links

Parvularcula bermudensis CIP 108254 is a Gram-negative, motile, oval-shaped bacterium of the family Parvularculaceae.

Gram-negative motile oval-shaped Bacteria

Name and taxonomic classification

SI-ID 107089

KCTC 12087,ATCC BAA-594,CIP 108254

@ref 20215

Last LPSN update 2026-05-29 08:38:29

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order "Parvularculales"

Family "Parvularculaceae"

Genus Parvularcula

Species Parvularcula bermudensis

Full scientific name Parvularcula bermudensis Cho and Giovannoni 2003

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
33927	negative	oval-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
33927	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
33927	CIP Medium 13			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
33927	positive	growth	30
33927	positive	growth	5-41
33927	negative	growth	45

Physiology and metabolism

Halophily

@ref	Salt	Tested relation	Concentration
33927	NaCl	growth	0 %
33927	NaCl	growth	2 %
33927	NaCl	growth	4 %
33927	NaCl	growth	6 %
33927	NaCl	growth	8 %
33927	NaCl	growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
33927	4853 ChEBI	esculin	-	hydrolysis
33927	606565 ChEBI	hippurate	-	hydrolysis
33927	17632 ChEBI	nitrate	+	reduction
33927	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
33927	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
33927	15688 ChEBI	acetoin	-
33927	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
33927	alcohol dehydrogenase	+	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
33927	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
33927	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
33927	caseinase	-	3.4.21.50
33927	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
33927	gamma-glutamyltransferase	-	2.3.2.2
33927	gelatinase	+
33927	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
33927	lipase	-
68382	lipase (C 14)	-		from API zym
33927	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
33927	ornithine decarboxylase	-	4.1.1.17
33927	oxidase	+
33927	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	+	3.4.21.4	from API zym
33927	tryptophan deaminase	-
33927	tween esterase	-
33927	urease	+	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
33927	-	+	+	+	-	+	+	-	+	-	-	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country
33927		Atlantic ocean
33927	Environment, Marine seawater	Atlantic Ocean

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
33927	1	Risk group (French classification)

Sequence information

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Parvularcula bermudensis gen. nov., sp. nov., a marine bacterium that forms a deep branch in the alpha-Proteobacteria.	Cho JC, Giovannoni SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.02566-0	2003

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#33927	Collection of Institut Pasteur ; Curators of the CIP; CIP 108254
#68382	Automatically annotated from API zym .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Parvularcula bermudensis (CIP 108254, ATCC BAA-594, KCTC 12087)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome-based predictions

Literature

Literature

References

BacDive

Help

Social Media