Name: Actinomycetospora succinea TT00-49
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13506

Type strain:

Species: Actinomycetospora succinea

Strain Designation: TT00-49

Culture col. no.: DSM 45775, KACC 14255, NBRC 103691, JCM 17984

Strain history: KACC 14255 <-- NBRC 103691 <-- T. Tamura TT00-49.

NCBI tax ID(s): 663603 (species)

SI-ID 396527

DSM 45775

Section

Actinomycetospora succinea TT00-49 is a mesophilic bacterium that builds an aerial mycelium and was isolated from vegetable field soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Actinomycetospora*
	Species	**Actinomycetospora succinea**
	Full Scientific Name (LPSN)	Actinomycetospora succinea Tamura et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69434]	Colony color	Golden yellow (1004)
[Ref.: #69434]	Cultivation medium used	ISP 4

[Ref.: #69434]	Colony color	Ivory (1014), honey yellow (1005)
[Ref.: #69434]	Cultivation medium used	suter without tyrosine

[Ref.: #69434]	Colony color	Sand yellow (1002)
[Ref.: #69434]	Cultivation medium used	suter with tyrosine

[Ref.: #69434]	Colony color	Signal yellow (1003)
[Ref.: #69434]	Cultivation medium used	ISP 2

[Ref.: #69434]	Colony color	Signal yellow (1003)
[Ref.: #69434]	Cultivation medium used	ISP 3

[Ref.: #69434]	Colony color	Signal yellow (1003)
[Ref.: #69434]	Cultivation medium used	ISP 5

[Ref.: #69434]	Colony color	Signal yellow (1003)
[Ref.: #69434]	Cultivation medium used	ISP 6

[Ref.: #69434]	Colony color	Signal yellow (1003), maize yellow (1006)
[Ref.: #69434]	Cultivation medium used	ISP 7

[Ref.: #69434]	Pigment production	yes
[Ref.: #69434]	Pigment name	Melanin
[Ref.: #69434]	Pigment production	yes
[Ref.: #69434]	Pigmentation color	Sand yellow (1002)
[Ref.: #69434]	Pigment name	soluble pigment

[Ref.: #69434]	Multicellular complex forming ability	yes
[Ref.: #69434]	Multicellular complex name	Aerial mycelium
[Ref.: #69434]	Medium Name (multicellularity)	ISP 2

[Ref.: #69434]	Multicellular complex forming ability	no
[Ref.: #69434]	Multicellular complex name	Aerial mycelium
[Ref.: #69434]	Medium Name (multicellularity)	ISP 3

[Ref.: #69434]	Multicellular complex forming ability	no
[Ref.: #69434]	Multicellular complex name	Aerial mycelium
[Ref.: #69434]	Medium Name (multicellularity)	ISP 4

[Ref.: #69434]	Multicellular complex forming ability	no
[Ref.: #69434]	Multicellular complex name	Aerial mycelium
[Ref.: #69434]	Medium Name (multicellularity)	ISP 5

[Ref.: #69434]	Multicellular complex forming ability	no
[Ref.: #69434]	Multicellular complex name	Aerial mycelium
[Ref.: #69434]	Medium Name (multicellularity)	ISP 6

[Ref.: #69434]	Multicellular complex forming ability	no
[Ref.: #69434]	Multicellular complex name	Aerial mycelium
[Ref.: #69434]	Medium Name (multicellularity)	ISP 7

[Ref.: #69434]	Multicellular complex forming ability	no
[Ref.: #69434]	Multicellular complex name	Aerial mycelium
[Ref.: #69434]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69434]	Multicellular complex forming ability	no
[Ref.: #69434]	Multicellular complex name	Aerial mycelium
[Ref.: #69434]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #69434]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69434]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69434]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69434]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18189]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #18189]

Culture medium growth

[Ref.: #18189]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18189]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #18189]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #18189]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69434]		NaCl		growth	0-10	%

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69434]	arabinose ChEBI	+/-	growth
[Ref.: #69434]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69434]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69434]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69434]	inositol ChEBI	-	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69434]	mannose ChEBI	+	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69434]	raffinose ChEBI	+/-	growth
[Ref.: #69434]	rhamnose ChEBI	-	growth
[Ref.: #69434]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69434]	xylose ChEBI	+/-	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69434]	3927	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69434]	6111	not determinedn.d.	-	+	+	-	+	+	-	-	-	+	+/-	-	-	-	+/-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18189]	Sample type/isolated from	vegetable field soil
[Ref.: #18189]	Geographic location (country and/or sea, region)	Amami Isalnd, Kagoshima
[Ref.: #18189]	Country	Japan
[Ref.: #18189]	Country ISO 3 Code	JPN
[Ref.: #18189]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Vegetable field soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Amami Island, Kagoshima Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	-
#Host Body-Site	#Plant	#Fruit (Seed)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18189]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18189]	Actinomycetospora succinea gene for 16S rRNA, partial sequence, strain: TT00-49	AB514514	1487	ENA	663603 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Actinomycetospora succinea DSM 45775	GCA_004363095	scaffold	GenBank	663603 tax ID
[Ref.: #66792]	Actinomycetospora succinea strain DSM 45775	663603.3	wgs	PATRIC	663603 tax ID	*
[Ref.: #66792]	Actinomycetospora succinea DSM 45775	2795385474	draft	JGI IMG/M	663603 tax ID	*

[Ref.: #18189]	GC-content	73 mol%
[Ref.: #67770]	GC-content	73 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinomycetospora succinea strain DSM 45775 PATRIC: 663603.3
[Ref.: #69480]	gram-positive	yes	89.149	no
[Ref.: #69480]	anaerobic	no	98.865	no
[Ref.: #69480]	halophile	no	89.716	no
[Ref.: #69480]	spore-forming	yes	59.793	no
[Ref.: #69480]	glucose-util	yes	85.097	no
[Ref.: #69480]	thermophile	no	98.448	no
[Ref.: #69480]	flagellated	no	98.349	no
[Ref.: #69480]	motile	no	89.2	no
[Ref.: #69480]	aerobic	yes	95.191	no
[Ref.: #69480]	glucose-ferment	no	91.793	yes

Availability in culture collections External links

[Ref.: #18189]

Culture collection no.

DSM 45775, KACC 14255, NBRC 103691, JCM 17984

[Ref.: #82698]

SI-ID 396527

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Actinomycetospora chibensis sp. nov., Actinomycetospora chlora sp. nov., Actinomycetospora cinnamomea sp. nov., Actinomycetospora corticicola sp. nov., Actinomycetospora lutea sp. nov., Actinomycetospora straminea sp. nov. and Actinomycetospora succinea sp. nov. and emended description of the genus Actinomycetospora.	Tamura T, Ishida Y, Hamada M, Otoguro M, Yamamura H, Hayakawa M, Suzuki KI	Int J Syst Evol Microbiol	10.1099/ijs.0.024166-0	2010	*

References

#18189

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45775

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69434

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#82698

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396527.1 )

* These data were automatically processed and therefore are not curated

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Actinomycetospora succinea strain DSM 45775

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