Name: Actinomycetospora straminea IY07-55
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13505

Type strain:

Species: Actinomycetospora straminea

Strain Designation: IY07-55

Culture col. no.: DSM 45774, KACC 14251, NBRC 105528, JCM 17983

Strain history: KACC 14251 <-- NBRC 105528 <-- Y. Ishida IY07-55.

NCBI tax ID(s): 663607 (species)

SI-ID 408290

DSM 45774

Section

Actinomycetospora straminea IY07-55 is a mesophilic bacterium that was isolated from paddy field soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Actinomycetospora*
	Species	**Actinomycetospora straminea**
	Full Scientific Name (LPSN)	Actinomycetospora straminea Tamura et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69433]	Colony color	Ivory (1014)
[Ref.: #69433]	Cultivation medium used	suter without tyrosine

[Ref.: #69433]	Colony color	Ivory (1014), signal yellow (1003)
[Ref.: #69433]	Cultivation medium used	ISP 7

[Ref.: #69433]	Colony color	Light ivory (1015)
[Ref.: #69433]	Cultivation medium used	ISP 6

[Ref.: #69433]	Colony color	Light ivory (1015), golden yellow (1004)
[Ref.: #69433]	Cultivation medium used	ISP 5

[Ref.: #69433]	Colony color	Light ivory (1015), saffron yellow (1017)
[Ref.: #69433]	Cultivation medium used	ISP 2

[Ref.: #69433]	Colony color	Light ivory (1015), saffron yellow (1017)
[Ref.: #69433]	Cultivation medium used	ISP 3

[Ref.: #69433]	Colony color	Sand yellow (1002)
[Ref.: #69433]	Cultivation medium used	suter with tyrosine

[Ref.: #69433]	Colony color	Signal yellow (1003)
[Ref.: #69433]	Cultivation medium used	ISP 4

[Ref.: #69433]	Pigment production	no
[Ref.: #69433]	Pigment name	Melanin
[Ref.: #69433]	Pigment production	yes
[Ref.: #69433]	Pigmentation color	Ivory (1014)
[Ref.: #69433]	Pigment name	soluble pigment

[Ref.: #69433]	Multicellular complex forming ability	no
[Ref.: #69433]	Multicellular complex name	Aerial mycelium
[Ref.: #69433]	Medium Name (multicellularity)	ISP 2

[Ref.: #69433]	Multicellular complex forming ability	no
[Ref.: #69433]	Multicellular complex name	Aerial mycelium
[Ref.: #69433]	Medium Name (multicellularity)	ISP 3

[Ref.: #69433]	Multicellular complex forming ability	no
[Ref.: #69433]	Multicellular complex name	Aerial mycelium
[Ref.: #69433]	Medium Name (multicellularity)	ISP 4

[Ref.: #69433]	Multicellular complex forming ability	no
[Ref.: #69433]	Multicellular complex name	Aerial mycelium
[Ref.: #69433]	Medium Name (multicellularity)	ISP 5

[Ref.: #69433]	Multicellular complex forming ability	no
[Ref.: #69433]	Multicellular complex name	Aerial mycelium
[Ref.: #69433]	Medium Name (multicellularity)	ISP 6

[Ref.: #69433]	Multicellular complex forming ability	no
[Ref.: #69433]	Multicellular complex name	Aerial mycelium
[Ref.: #69433]	Medium Name (multicellularity)	ISP 7

[Ref.: #69433]	Multicellular complex forming ability	no
[Ref.: #69433]	Multicellular complex name	Aerial mycelium
[Ref.: #69433]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69433]	Multicellular complex forming ability	no
[Ref.: #69433]	Multicellular complex name	Aerial mycelium
[Ref.: #69433]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #69433]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69433]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69433]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69433]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18188]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #18188]

Culture medium growth

[Ref.: #18188]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18188]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #18188]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #18188]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69433]		NaCl		growth	0-10	%

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69433]	arabinose ChEBI	+	growth
[Ref.: #69433]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69433]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69433]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69433]	inositol ChEBI	+	growth
[Ref.: #69433]	mannose ChEBI	+	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69433]	raffinose ChEBI	+/-	growth
[Ref.: #69433]	rhamnose ChEBI	-	growth
[Ref.: #69433]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69433]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69433]	3926	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	+/-	+	-	-	+/-	+/-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69433]	6110	not determinedn.d.	+/-	+/-	+	-	+	+/-	-	-	-	+/-	+/-	-	-	-	+/-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18188]	Sample type/isolated from	paddy field soil
[Ref.: #18188]	Geographic location (country and/or sea, region)	Iriomote Island, Okinawa
[Ref.: #18188]	Country	Japan
[Ref.: #18188]	Country ISO 3 Code	JPN
[Ref.: #18188]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Paddy soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Iriomote Island, Okinawa Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Condition	#Anoxic (anaerobic)	-
#Condition	#Humid	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18188]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18188]	Actinomycetospora straminea gene for 16S rRNA, partial sequence, strain: IY07-55	AB514518	1487	ENA	663607 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Actinomycetospora straminea JCM 17983	GCA_028737255	contig	GenBank	663607 tax ID	*

[Ref.: #18188]	GC-content	74 mol%
[Ref.: #67770]	GC-content	74 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinomycetospora straminea JCM 17983 NCBI: GCA_028737255.1
[Ref.: #69480]	motile	no	83.503	no
[Ref.: #69480]	flagellated	no	98.026	no
[Ref.: #69480]	gram-positive	yes	72.605	no
[Ref.: #69480]	anaerobic	no	96.175	no
[Ref.: #69480]	aerobic	yes	87.103	no
[Ref.: #69480]	halophile	no	83.33	no
[Ref.: #69480]	spore-forming	no	87.6	no
[Ref.: #69480]	glucose-ferment	no	84.996	no
[Ref.: #69480]	thermophile	no	97.764	yes
[Ref.: #69480]	glucose-util	yes	85.357	yes

Availability in culture collections External links

[Ref.: #18188]

Culture collection no.

DSM 45774, KACC 14251, NBRC 105528, JCM 17983

[Ref.: #82697]

SI-ID 408290

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomycetospora callitridis sp. nov., an endophytic actinobacterium isolated from the surface-sterilised root of an Australian native pine tree.	Kaewkla O, Franco CMM	Antonie Van Leeuwenhoek	10.1007/s10482-018-1162-1	2018	*
Phylogeny	Actinomycetospora rhizophila sp. nov., an actinomycete isolated from rhizosphere soil of a peace lily (Spathi phyllum Kochii).	He H, Zhang Y, Ma Z, Li C, Liu C, Zhou Y, Li L, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijs.0.000131	2015	*
Phylogeny	Description of Actinomycetospora chibensis sp. nov., Actinomycetospora chlora sp. nov., Actinomycetospora cinnamomea sp. nov., Actinomycetospora corticicola sp. nov., Actinomycetospora lutea sp. nov., Actinomycetospora straminea sp. nov. and Actinomycetospora succinea sp. nov. and emended description of the genus Actinomycetospora.	Tamura T, Ishida Y, Hamada M, Otoguro M, Yamamura H, Hayakawa M, Suzuki KI	Int J Syst Evol Microbiol	10.1099/ijs.0.024166-0	2010	*

References

#18188

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45774

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69433

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#82697

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408290.1 )

* These data were automatically processed and therefore are not curated

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Actinomycetospora straminea JCM 17983

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