Mogibacterium diversum (CIP 107383, JCM 11205, ATCC 700923)

Name: Mogibacterium diversum (CIP 107383, JCM 11205, ATCC 700923)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 135033

Type strain

Strain Designation HM-7

Culture col. no. CIP 107383 JCM 11205 ATCC 700923 CCUG 47132 KCTC 15026 1 more

NCBI tax ID(s) 114527

Special Collections CCUG JCM KCTC CIP

Links

Mogibacterium diversum HM-7 is an obligate anaerobe, mesophilic, rod-shaped prokaryote that was isolated from Human tongue plaque.

rod-shaped obligate anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 87713

KCTC 15026,ATCC 700923,JCM 11205,CCUG 47132,CIP 107383

@ref 20215

Last LPSN update 2025-12-16 10:02:12

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Peptostreptococcales

Family Anaerovoracaceae

Genus Mogibacterium

Species Mogibacterium diversum

Full scientific name Mogibacterium diversum Nakazawa et al. 2002

Morphology

Cell morphology

@ref	Cell shape	Motility
67771	rod-shaped
67771
125438
33785	rod-shaped

Colony morphology

57525

Incubation period2-3 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition
33785	MEDIUM 20 - for Anaerobic bacteria		Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
33785	CIP Medium 20

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
33785	positive	growth	37	mesophilic
57525	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic
67771	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
57525	obligate anaerobe
67771	anaerobe
125438	anaerobe

Spore formation

67771

Spore formationno

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Oral cavity and airways	#Plaque
#Host	#Human	-

Isolation

@ref	Sample type
57525	Human tongue plaque
67770	Human tongue plaque
67771	From human tongue plaque
33785	Human, Tongue plaque

Taxonmaps

69479

Global distribution of 16S sequence LC096235 (>99% sequence identity) for Mogibacterium from Microbeatlas

Aquatic Samples	585
Soil Samples	207
Animal Samples	33004
Plant Samples	131
Total Samples	33927

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
33785	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM299892v1 assembly for Mogibacterium diversum CCUG 47132	complete	GCA_002998925	114527.3	2788500273	114527	96.54

Genome browser: GCA_002998925

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
67770	Mogibacterium diversum gene for 16S rRNA	AB037874	1455	114527
67771	Mogibacterium diversum gene for 16S ribosomal RNA, partial sequence, strain: JCM 11205	LC096235	1455	114527
67771	Mogibacterium diversum strain HM-7 16S ribosomal RNA, partial sequence	NR_027191	1455	114527

GC content

@ref	GC-content (mol%)	Method
67770	42	high performance liquid chromatography (HPLC)
67771	42.0	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Mogibacterium diversum CCUG 47132
NCBI: GCA_002998925

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	88.70	no
125439	gram_stain	BacteriaNetⓘ	variable	78.10	no
125439	motility	BacteriaNetⓘ	yes	80.90	no
125439	spore_formation	BacteriaNetⓘ	yes	69.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mogibacterium diversum CCUG 47132
NCBI: GCA_002998925.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	77.40	yes
125438	anaerobic	anaerobicⓘ	yes	90.08	yes
125438	aerobic	aerobicⓘ	no	98.41	no
125438	spore-forming	spore-formingⓘ	no	77.00	yes
125438	thermophilic	thermophileⓘ	no	94.21	yes
125438	flagellated	motile2+ⓘ	no	93.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Using Nanopore Sequencing to Obtain Complete Bacterial Genomes from Saliva Samples.	Baker JL.	mSystems	10.1128/msystems.00491-22	2022
Genetics	Shotgun metagenomic analysis of saliva microbiome suggests Mogibacterium as a factor associated with chronic bacterial osteomyelitis.	Yahara H, Yanamoto S, Takahashi M, Hamada Y, Asaka T, Kitagawa Y, Moridera K, Noguchi K, Maruoka Y, Yahara K.	PLoS One	10.1371/journal.pone.0302569	2024
Phylogeny	Taxonomic characterization of Mogibacterium diversum sp. nov. and Mogibacterium neglectum sp. nov., isolated from human oral cavities.	Nakazawa F, Poco SE, Sato M, Ikeda T, Kalfas S, Sundqvist G, Hoshino E	Int J Syst Evol Microbiol	10.1099/00207713-52-1-115	2002

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#33785	Collection of Institut Pasteur ; Curators of the CIP; CIP 107383
#57525	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47132
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mogibacterium diversum (CIP 107383, JCM 11205, ATCC 700923)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002998925

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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