Actinomycetospora corticicola (DSM 45772, KACC 14253, NBRC 103689)

Name: Actinomycetospora corticicola (DSM 45772, KACC 14253, NBRC 103689)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13503

Type strain

Strain Designation 014-5

Culture col. no. DSM 45772 KACC 14253 NBRC 103689 014-5 TBRC 8065 1 more

NCBI tax ID(s) 663602

Special Collections DSMZ JCM Wink compendium

History <- S.-W. Kwon, KACC; KACC 14253 <- T. Tamura; 014-5 KACC 14253 <-- NBRC 103689 <-- T. Tamura 014-5.

Links

Actinomycetospora corticicola 014-5 is a mesophilic prokaryote that was isolated from bark of mangrove tree, Kandelia candel.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 400305

NBRC 103689,JCM 17981,DSM 45772

@ref 20215

Last LPSN update 2026-02-09 11:21:09

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Actinomycetospora

Species Actinomycetospora corticicola

Full scientific name Actinomycetospora corticicola Tamura et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.5

Colony morphology

@ref	Colony color	Medium used
69431	Golden yellow (1004)	suter with tyrosine
69431	Daffodil yellow (1007)	ISP 4
69431	Rape yellow (1021)	ISP 7
69431	Signal yellow (1003)	ISP 2
69431	Signal yellow (1003)	ISP 3
69431	Traffic yellow (1023)	ISP 5
69431	Traffic yellow (1023)	ISP 6
69431	Traffic yellow (1023)	suter without tyrosine

Multicellular morphology

@ref	Complex name	Medium name
69431	Aerial mycelium	ISP 2
69431	Aerial mycelium	ISP 3
69431	Aerial mycelium	ISP 4
69431	Aerial mycelium	ISP 5
69431	Aerial mycelium	ISP 6
69431	Aerial mycelium	ISP 7
69431	Aerial mycelium	suter with tyrosine
69431	Aerial mycelium	suter without tyrosine

Pigmentation

@ref	Production	Color	Name
69431			melanin pigment
69431		Sand yellow (1002)	soluble pigment

Multimedia

@ref:	69431
multimedia content:	DSM_45772_image3.jpeg
multimedia.multimedia content:	DSM_45772_image3.jpeg
caption:	Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

@ref:	69431
multimedia content:	DSM_45772_image4.jpeg
multimedia.multimedia content:	DSM_45772_image4.jpeg
caption:	Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
18186	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
18186	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	91.514
125439	obligate aerobe	96.5

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69431	NaCl	positive	growth	0-7.5 %

Observation

67770

Observationquinones: MK-8(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69431	22599 ChEBI	arabinose	+/-	growth
69431	62968 ChEBI	cellulose	+/-	growth
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
69431	28757 ChEBI	fructose	+	growth
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
69431	17234 ChEBI	glucose	+	growth
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
69431	17268 ChEBI	inositol	+/-	growth
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
69431	37684 ChEBI	mannose	+	growth
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
69431	16634 ChEBI	raffinose	+/-	growth
69431	26546 ChEBI	rhamnose	+/-	growth
69431	17992 ChEBI	sucrose	+	growth
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
69431	18222 ChEBI	xylose	+/-	growth

Enzymes

@ref	Value	Activity	Ec
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase lipase (C 8)	+		from API zym
68379	gelatinase	-		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68379	urease	-	3.5.1.5	from API Coryne

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
69431	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69431	not determinedn.d.	-	+/-	+	-	+	+/-	-	-	-	+/-	+/-	-	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Mangrove
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Bark

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
18186	bark of mangrove tree, Kandelia candel		Iriomote Isalnd, Okinawa	Japan	JPN	Asia
67770	Bark of a mangrove tree, Kandelia candel	Kandelia candel	Iriomote Island, Okinawa Pref.	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB514513 (>99% sequence identity) for Actinomycetospora from Microbeatlas

Aquatic Samples	22
Soil Samples	61
Animal Samples	100
Plant Samples	24
Total Samples	207

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18186	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM1340950v1 assembly for Actinomycetospora corticicola DSM 45772	contig	GCA_013409505	663602.3	2844856562	663602	77.92
124043	ASM3954215v1 assembly for Actinomycetospora corticicola JCM 17981	scaffold	GCA_039542155			663602	72.12

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
18186	Actinomycetospora corticicola gene for 16S rRNA, partial sequence, strain: 014-5	AB514513	1485		663602

GC content

@ref	GC-content (mol%)	Method
18186	74
67770	74	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Actinomycetospora corticicola DSM 45772
NCBI: GCA_013409505

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	52.40	no
125439	motility	BacteriaNetⓘ	no	77.20	no
125439	gram_stain	BacteriaNetⓘ	positive	99.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinomycetospora corticicola strain DSM 45772
PATRIC: 663602.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.85	no
125438	anaerobic	anaerobicⓘ	no	97.32	no
125438	spore-forming	spore-formingⓘ	yes	69.73	no
125438	aerobic	aerobicⓘ	yes	91.51	no
125438	thermophilic	thermophileⓘ	no	94.50	yes
125438	flagellated	motile2+ⓘ	no	84.06	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomycetospora atypica sp. nov., a novel soil actinomycete and emended description of the genus Actinomycetospora.	Zhang Y, Liu C, Zhang J, Shen Y, Li C, He H, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-014-0143-2	2014
Phylogeny	Actinomycetospora rishiriensis sp. nov., isolated from a lichen.	Yamamura H, Ashizawa H, Nakagawa Y, Hamada M, Ishida Y, Otoguro M, Tamura T, Hayakawa M	Int J Syst Evol Microbiol	10.1099/ijs.0.028753-0	2010
Phylogeny	Description of Actinomycetospora chibensis sp. nov., Actinomycetospora chlora sp. nov., Actinomycetospora cinnamomea sp. nov., Actinomycetospora corticicola sp. nov., Actinomycetospora lutea sp. nov., Actinomycetospora straminea sp. nov. and Actinomycetospora succinea sp. nov. and emended description of the genus Actinomycetospora.	Tamura T, Ishida Y, Hamada M, Otoguro M, Yamamura H, Hayakawa M, Suzuki KI	Int J Syst Evol Microbiol	10.1099/ijs.0.024166-0	2010
Phylogeny	Actinomycetospora soli sp. nov., isolated from the rhizosphere soil of Averrhoa carambola L.	Chantavorakit T, Duangmal K	Int J Syst Evol Microbiol	10.1099/ijsem.0.005277	2022

References

#18186	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45772
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69431	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinomycetospora corticicola (DSM 45772, KACC 14253, NBRC 103689)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_013409505

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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