Name: Actinomycetospora corticicola 014-5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13503

Type strain:

Species: Actinomycetospora corticicola

Strain Designation: 014-5

Culture col. no.: DSM 45772, KACC 14253, NBRC 103689, JCM 17981, TBRC 8065

Strain history: KACC 14253 <-- NBRC 103689 <-- T. Tamura 014-5.

NCBI tax ID(s): 663602 (species)

SI-ID 400305

DSM 45772

Section

Actinomycetospora corticicola 014-5 is a mesophilic bacterium that was isolated from bark of mangrove tree, Kandelia candel.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Actinomycetospora*
	Species	**Actinomycetospora corticicola**
	Full Scientific Name (LPSN)	Actinomycetospora corticicola Tamura et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %90.95

[Ref.: #69431]	Colony color	Golden yellow (1004)
[Ref.: #69431]	Cultivation medium used	suter with tyrosine

[Ref.: #69431]	Colony color	Daffodil yellow (1007)
[Ref.: #69431]	Cultivation medium used	ISP 4

[Ref.: #69431]	Colony color	Rape yellow (1021)
[Ref.: #69431]	Cultivation medium used	ISP 7

[Ref.: #69431]	Colony color	Signal yellow (1003)
[Ref.: #69431]	Cultivation medium used	ISP 2

[Ref.: #69431]	Colony color	Signal yellow (1003)
[Ref.: #69431]	Cultivation medium used	ISP 3

[Ref.: #69431]	Colony color	Traffic yellow (1023)
[Ref.: #69431]	Cultivation medium used	ISP 5

[Ref.: #69431]	Colony color	Traffic yellow (1023)
[Ref.: #69431]	Cultivation medium used	ISP 6

[Ref.: #69431]	Colony color	Traffic yellow (1023)
[Ref.: #69431]	Cultivation medium used	suter without tyrosine

[Ref.: #69431]	Pigment production	yes
[Ref.: #69431]	Pigment name	Melanin
[Ref.: #69431]	Pigment production	yes
[Ref.: #69431]	Pigmentation color	Sand yellow (1002)
[Ref.: #69431]	Pigment name	soluble pigment

[Ref.: #69431]	Multicellular complex forming ability	no
[Ref.: #69431]	Multicellular complex name	Aerial mycelium
[Ref.: #69431]	Medium Name (multicellularity)	ISP 2

[Ref.: #69431]	Multicellular complex forming ability	no
[Ref.: #69431]	Multicellular complex name	Aerial mycelium
[Ref.: #69431]	Medium Name (multicellularity)	ISP 3

[Ref.: #69431]	Multicellular complex forming ability	no
[Ref.: #69431]	Multicellular complex name	Aerial mycelium
[Ref.: #69431]	Medium Name (multicellularity)	ISP 4

[Ref.: #69431]	Multicellular complex forming ability	no
[Ref.: #69431]	Multicellular complex name	Aerial mycelium
[Ref.: #69431]	Medium Name (multicellularity)	ISP 5

[Ref.: #69431]	Multicellular complex forming ability	no
[Ref.: #69431]	Multicellular complex name	Aerial mycelium
[Ref.: #69431]	Medium Name (multicellularity)	ISP 6

[Ref.: #69431]	Multicellular complex forming ability	no
[Ref.: #69431]	Multicellular complex name	Aerial mycelium
[Ref.: #69431]	Medium Name (multicellularity)	ISP 7

[Ref.: #69431]	Multicellular complex forming ability	no
[Ref.: #69431]	Multicellular complex name	Aerial mycelium
[Ref.: #69431]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69431]	Multicellular complex forming ability	no
[Ref.: #69431]	Multicellular complex name	Aerial mycelium
[Ref.: #69431]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #69431]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69431]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69431]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69431]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18186]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #18186]

Culture medium growth

[Ref.: #18186]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18186]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #18186]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #18186]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69431]		NaCl		growth	0-7.5	%

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69431]	arabinose ChEBI	+/-	growth
[Ref.: #69431]	cellulose ChEBI	+/-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69431]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69431]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69431]	inositol ChEBI	+/-	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69431]	mannose ChEBI	+	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69431]	raffinose ChEBI	+/-	growth
[Ref.: #69431]	rhamnose ChEBI	+/-	growth
[Ref.: #69431]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69431]	xylose ChEBI	+/-	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69431]	3924	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69431]	6108	not determinedn.d.	-	+/-	+	-	+	+/-	-	-	-	+/-	+/-	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18186]	Sample type/isolated from	bark of mangrove tree, Kandelia candel
[Ref.: #18186]	Geographic location (country and/or sea, region)	Iriomote Isalnd, Okinawa
[Ref.: #18186]	Country	Japan
[Ref.: #18186]	Country ISO 3 Code	JPN
[Ref.: #18186]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Bark of a mangrove tree, Kandelia candel
[Ref.: #67770]	Host species	Kandelia candel
[Ref.: #67770]	Geographic location (country and/or sea, region)	Iriomote Island, Okinawa Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Mangrove
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Bark

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB514513 (>99% sequence identity) for Actinomycetospora from Microbeatlas

Aquatic Samples	22
Soil Samples	61
Animal Samples	100
Plant Samples	24
Total Samples	207

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18186]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18186]	Actinomycetospora corticicola gene for 16S rRNA, partial sequence, strain: 014-5	AB514513	1485	ENA	663602 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Actinomycetospora corticicola DSM 45772	GCA_013409505	contig	GenBank	663602 tax ID
[Ref.: #66792]	Actinomycetospora corticicola strain DSM 45772	663602.3	wgs	PATRIC	663602 tax ID	*
[Ref.: #66792]	Actinomycetospora corticicola DSM 45772	2844856562	draft	JGI IMG/M	663602 tax ID	*

[Ref.: #18186]	GC-content	74 mol%
[Ref.: #67770]	GC-content	74 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinomycetospora corticicola strain DSM 45772 PATRIC: 663602.3
[Ref.: #69481]	spore-forming	yes	82	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinomycetospora corticicola strain DSM 45772 PATRIC: 663602.3
[Ref.: #69480]	gram-positive	yes	85.489	no
[Ref.: #69480]	anaerobic	no	99.146	no
[Ref.: #69480]	halophile	no	88.378	no
[Ref.: #69480]	spore-forming	yes	60.322	no
[Ref.: #69480]	glucose-util	yes	89.092	yes
[Ref.: #69480]	flagellated	no	97.969	no
[Ref.: #69480]	thermophile	no	98.834	yes
[Ref.: #69480]	aerobic	yes	93.204	no
[Ref.: #69480]	glucose-ferment	no	92.013	no
[Ref.: #69480]	motile	no	89.685	no

Availability in culture collections External links

[Ref.: #18186]

Culture collection no.

DSM 45772, KACC 14253, NBRC 103689, JCM 17981, TBRC 8065

[Ref.: #82695]

SI-ID 400305

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomycetospora atypica sp. nov., a novel soil actinomycete and emended description of the genus Actinomycetospora.	Zhang Y, Liu C, Zhang J, Shen Y, Li C, He H, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-014-0143-2	2014	*
Phylogeny	Actinomycetospora rishiriensis sp. nov., isolated from a lichen.	Yamamura H, Ashizawa H, Nakagawa Y, Hamada M, Ishida Y, Otoguro M, Tamura T, Hayakawa M	Int J Syst Evol Microbiol	10.1099/ijs.0.028753-0	2010	*
Phylogeny	Description of Actinomycetospora chibensis sp. nov., Actinomycetospora chlora sp. nov., Actinomycetospora cinnamomea sp. nov., Actinomycetospora corticicola sp. nov., Actinomycetospora lutea sp. nov., Actinomycetospora straminea sp. nov. and Actinomycetospora succinea sp. nov. and emended description of the genus Actinomycetospora.	Tamura T, Ishida Y, Hamada M, Otoguro M, Yamamura H, Hayakawa M, Suzuki KI	Int J Syst Evol Microbiol	10.1099/ijs.0.024166-0	2010	*
Phylogeny	Actinomycetospora soli sp. nov., isolated from the rhizosphere soil of Averrhoa carambola L.	Chantavorakit T, Duangmal K	Int J Syst Evol Microbiol	10.1099/ijsem.0.005277	2022	*

References

#18186

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45772

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69431

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82695

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400305.1 )

* These data were automatically processed and therefore are not curated

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Actinomycetospora corticicola strain DSM 45772

Actinomycetospora corticicola strain DSM 45772

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