Name: Actinomycetospora chibensis TT04-21
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13500

Type strain:

Species: Actinomycetospora chibensis

Strain Designation: TT04-21

Culture col. no.: DSM 45769, KACC 14256, NBRC 103694, JCM 17978

Strain history: KACC 14256 <-- NBRC 103694 <-- T. Tamura TT04-21.

NCBI tax ID(s): 663606 (species)

Section

Actinomycetospora chibensis TT04-21 is a mesophilic bacterium that builds an aerial mycelium and was isolated from paddy field soil.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Actinomycetospora*
	Species	**Actinomycetospora chibensis**
	Full Scientific Name (PNU)	Actinomycetospora chibensis Tamura et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69429]	Colony color	Signal yellow (1003)
[Ref.: #69429]	Cultivation medium used	ISP 2

[Ref.: #69429]	Colony color	Signal yellow (1003)
[Ref.: #69429]	Cultivation medium used	ISP 3

[Ref.: #69429]	Colony color	Signal yellow (1003)
[Ref.: #69429]	Cultivation medium used	ISP 4

[Ref.: #69429]	Colony color	Signal yellow (1003)
[Ref.: #69429]	Cultivation medium used	ISP 5

[Ref.: #69429]	Colony color	Signal yellow (1003)
[Ref.: #69429]	Cultivation medium used	ISP 6

[Ref.: #69429]	Colony color	Traffic yellow (1023)
[Ref.: #69429]	Cultivation medium used	ISP 7

[Ref.: #69429]	Colony color	Traffic yellow (1023)
[Ref.: #69429]	Cultivation medium used	suter with tyrosine

[Ref.: #69429]	Colony color	Traffic yellow (1023), maize yellow (1006)
[Ref.: #69429]	Cultivation medium used	suter without tyrosine

[Ref.: #69429]	Pigment production	no
[Ref.: #69429]	Pigment name	Melanin
[Ref.: #69429]	Pigment production	no
[Ref.: #69429]	Pigment name	soluble pigment

[Ref.: #69429]	Multicellular complex forming ability	no
[Ref.: #69429]	Multicellular complex name	Aerial mycelium
[Ref.: #69429]	Medium Name (multicellularity)	ISP 2

[Ref.: #69429]	Multicellular complex forming ability	no
[Ref.: #69429]	Multicellular complex name	Aerial mycelium
[Ref.: #69429]	Medium Name (multicellularity)	ISP 3

[Ref.: #69429]	Multicellular complex forming ability	yes
[Ref.: #69429]	Multicellular complex name	Aerial mycelium
[Ref.: #69429]	Medium Name (multicellularity)	ISP 4

[Ref.: #69429]	Multicellular complex forming ability	no
[Ref.: #69429]	Multicellular complex name	Aerial mycelium
[Ref.: #69429]	Medium Name (multicellularity)	ISP 5

[Ref.: #69429]	Multicellular complex forming ability	no
[Ref.: #69429]	Multicellular complex name	Aerial mycelium
[Ref.: #69429]	Medium Name (multicellularity)	ISP 6

[Ref.: #69429]	Multicellular complex forming ability	no
[Ref.: #69429]	Multicellular complex name	Aerial mycelium
[Ref.: #69429]	Medium Name (multicellularity)	ISP 7

[Ref.: #69429]	Multicellular complex forming ability	no
[Ref.: #69429]	Multicellular complex name	Aerial mycelium
[Ref.: #69429]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69429]	Multicellular complex forming ability	no
[Ref.: #69429]	Multicellular complex name	Aerial mycelium
[Ref.: #69429]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #69429]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69429]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69429]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69429]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18183]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #18183]

Culture medium growth

[Ref.: #18183]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #18183]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #18183]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #18183]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69429]		NaCl		growth	0-5	%

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69429]	arabinose ChEBI	+	growth
[Ref.: #69429]	cellulose ChEBI	+	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69429]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69429]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69429]	inositol ChEBI	+	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69429]	mannose ChEBI	+	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69429]	raffinose ChEBI	+	growth
[Ref.: #69429]	rhamnose ChEBI	+	growth
[Ref.: #69429]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69429]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69429]	3922	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69429]	6106	not determinedn.d.	+/-	+/-	+	-	+	+/-	-	-	-	+/-	+/-	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18183]	Sample type/isolated from	paddy field soil
[Ref.: #18183]	Geographic location (country and/or sea, region)	Mobara, Chiba
[Ref.: #18183]	Country	Japan
[Ref.: #18183]	Country ISO 3 Code	JPN
[Ref.: #18183]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Paddy soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Mobara, Chiba Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Condition	#Anoxic (anaerobic)	-
#Condition	#Humid	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18183]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18183]	Actinomycetospora chibensis gene for 16S rRNA, partial sequence, strain: TT04-21	AB514517	1487	ENA	663606 tax ID

[Ref.: #18183]	GC-content	73 mol%
[Ref.: #67770]	GC-content	73 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #18183]

Culture collection no.

DSM 45769, KACC 14256, NBRC 103694, JCM 17978

[Ref.: #20218]

Associated Passport(s) in StrainInfo

865972, 865973

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomycetospora callitridis sp. nov., an endophytic actinobacterium isolated from the surface-sterilised root of an Australian native pine tree.	Kaewkla O, Franco CMM	Antonie Van Leeuwenhoek	10.1007/s10482-018-1162-1	2018	*
Phylogeny	Actinomycetospora rhizophila sp. nov., an actinomycete isolated from rhizosphere soil of a peace lily (Spathi phyllum Kochii).	He H, Zhang Y, Ma Z, Li C, Liu C, Zhou Y, Li L, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijs.0.000131	2015	*
Phylogeny	Description of Actinomycetospora chibensis sp. nov., Actinomycetospora chlora sp. nov., Actinomycetospora cinnamomea sp. nov., Actinomycetospora corticicola sp. nov., Actinomycetospora lutea sp. nov., Actinomycetospora straminea sp. nov. and Actinomycetospora succinea sp. nov. and emended description of the genus Actinomycetospora.	Tamura T, Ishida Y, Hamada M, Otoguro M, Yamamura H, Hayakawa M, Suzuki KI	Int J Syst Evol Microbiol	10.1099/ijs.0.024166-0	2010	*

References

#18183

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45769

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69429

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

* These data were automatically processed and therefore are not curated

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