Name: Terriglobus saanensis SP1PR4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 135

Type strain:

Species: Terriglobus saanensis

Strain Designation: SP1PR4

Culture col. no.: DSM 23119, ATCC BAA-1853

Strain history: <- M. Männistö, Finnish Forest Res. Inst. (Metla), Rovaniemi; SP1PR4

NCBI tax ID(s): 870903 (species)

SI-ID 398494

DSM 23119

Section

Terriglobus saanensis SP1PR4 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from tundra soil from a wind-exposed mountain ridge.

Gram-negative
rod-shaped
aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Acidobacteriota*
	Class	*Terriglobia*
	Order	*Terriglobales*
	Family	*Acidobacteriaceae*
	Genus	*Terriglobus*
	Species	**Terriglobus saanensis**
	Full Scientific Name (LPSN)	Terriglobus saanensis Männistö et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #22970]	Gram stain	negative

[Ref.: #22970]	Cell length	1.5-3.0 µm

[Ref.: #22970]	Cell width	0.5-0.7 µm

[Ref.: #22970]	Cell shape	rod-shaped

[Ref.: #22970]	Motility	no

[Ref.: #22970]	Colony size	1.0 mm
[Ref.: #22970]	Colony color	light beige to light pink
[Ref.: #22970]	Colony shape	circular
[Ref.: #22970]	Cultivation medium used	R2A agar

[Ref.: #16717]	Incubation period	3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16717]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #16717]

Culture medium growth

[Ref.: #16717]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16717]

Culture medium composition

expand / minimize

[Ref.: #22970]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #22970]

Culture medium growth

		Temperature
[Ref.: #16717]	growth	20 °C
[Ref.: #22970]	growth	4.0-30.0 °C
[Ref.: #22970]	growth	4.0 °C
[Ref.: #22970]	optimum	25.0 °C

[Ref.: #16717]	Temperature range	psychrophilic
[Ref.: #22970]	Temperature range	psychrophilic
[Ref.: #22970]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #22970]			optimum	6.0
[Ref.: #22970]			growth	4.5-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #22970]

Oxygen tolerance

aerobe

[Ref.: #22970]

Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #22970]	2-dehydro-D-gluconate ChEBI	-	growth
[Ref.: #22970]	5-dehydro-D-gluconate ChEBI	-	growth
[Ref.: #22970]	acetate ChEBI	-	growth
[Ref.: #22970]	adipate ChEBI	-	growth
[Ref.: #22970]	alginate ChEBI	-	hydrolysis
[Ref.: #22970]	amygdalin ChEBI	-	growth
[Ref.: #22970]	arbutin ChEBI	-	growth
[Ref.: #22970]	cationic chitosan ChEBI	-	hydrolysis
[Ref.: #22970]	cellobiose ChEBI	+	growth
[Ref.: #22970]	cellulose ChEBI	-	hydrolysis
[Ref.: #22970]	chitin ChEBI	-	hydrolysis
[Ref.: #22970]	citrate ChEBI	-	growth
[Ref.: #22970]	D-alanine ChEBI	-	growth
[Ref.: #22970]	D-arabinose ChEBI	-	growth
[Ref.: #22970]	D-arabitol ChEBI	-	growth
[Ref.: #22970]	D-fructose ChEBI	+	growth
[Ref.: #22970]	D-fucose ChEBI	-	growth
[Ref.: #22970]	D-galactose ChEBI	+	growth
[Ref.: #22970]	D-glucose ChEBI	+	growth
[Ref.: #22970]	D-lyxose ChEBI	-	growth
[Ref.: #22970]	D-mannitol ChEBI	-	growth
[Ref.: #22970]	D-mannose ChEBI	+	growth
[Ref.: #22970]	D-ribose ChEBI	+	growth
[Ref.: #22970]	D-sorbitol ChEBI	-	growth
[Ref.: #22970]	D-tagatose ChEBI	-	growth
[Ref.: #22970]	D-trehalose ChEBI	-	growth
[Ref.: #22970]	D-xylose ChEBI	+	growth
[Ref.: #22970]	decanoate ChEBI	-	growth
[Ref.: #22970]	erythritol ChEBI	-	growth
[Ref.: #22970]	esculin ChEBI	+	hydrolysis
[Ref.: #22970]	formate ChEBI	-	growth
[Ref.: #22970]	galactitol ChEBI	-	growth
[Ref.: #22970]	gelatin ChEBI	-	hydrolysis
[Ref.: #22970]	gentiobiose ChEBI	+	growth
[Ref.: #22970]	gluconate ChEBI	-	growth
[Ref.: #22970]	glucose ChEBI	-	fermentation
[Ref.: #22970]	glucuronate ChEBI	-	growth
[Ref.: #22970]	glutamate ChEBI	-	growth
[Ref.: #22970]	glycerol ChEBI	-	growth
[Ref.: #22970]	glycine ChEBI	-	growth
[Ref.: #22970]	glycogen ChEBI	-	growth
[Ref.: #22970]	inulin ChEBI	-	growth
[Ref.: #22970]	L-alanine ChEBI	-	growth
[Ref.: #22970]	L-arabinose ChEBI	-	growth
[Ref.: #22970]	L-arabitol ChEBI	-	growth
[Ref.: #22970]	L-fucose ChEBI	-	growth
[Ref.: #22970]	L-ornithine ChEBI	-	growth
[Ref.: #22970]	L-rhamnose ChEBI	+	growth
[Ref.: #22970]	L-sorbose ChEBI	-	growth
[Ref.: #22970]	lactose ChEBI	+	growth
[Ref.: #22970]	laminarin ChEBI	+	hydrolysis
[Ref.: #22970]	lichenin ChEBI	-	hydrolysis
[Ref.: #22970]	malate ChEBI	-	growth
[Ref.: #22970]	maltose ChEBI	+	growth
[Ref.: #22970]	melezitose ChEBI	+	growth
[Ref.: #22970]	melibiose ChEBI	+	growth
[Ref.: #22970]	methyl alpha-D-glucopyranoside ChEBI	-	growth
[Ref.: #22970]	methyl alpha-D-mannoside ChEBI	-	growth
[Ref.: #22970]	methyl beta-D-xylopyranoside ChEBI	-	growth
[Ref.: #22970]	myo-inositol ChEBI	-	growth
[Ref.: #22970]	N-acetylglucosamine ChEBI	+	growth
[Ref.: #22970]	nitrate ChEBI	-	reduction
[Ref.: #22970]	pectin ChEBI	+	hydrolysis
[Ref.: #22970]	pullulan ChEBI	-	hydrolysis
[Ref.: #22970]	raffinose ChEBI	+	growth
[Ref.: #22970]	ribitol ChEBI	-	growth
[Ref.: #22970]	starch ChEBI	+	hydrolysis
[Ref.: #22970]	sucrose ChEBI	+	growth
[Ref.: #22970]	turanose ChEBI	+	growth
[Ref.: #22970]	xylan ChEBI	-	hydrolysis
[Ref.: #22970]	xylitol ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #22970]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #22970]	acid phosphatase	+	3.1.3.2
[Ref.: #22970]	alkaline phosphatase	+	3.1.3.1
[Ref.: #22970]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #22970]	alpha-fucosidase	+	3.2.1.51
[Ref.: #22970]	alpha-galactosidase	+	3.2.1.22
[Ref.: #22970]	alpha-glucosidase	+	3.2.1.20
[Ref.: #22970]	alpha-mannosidase	+	3.2.1.24
[Ref.: #22970]	arginine dihydrolase	-	3.5.3.6
[Ref.: #22970]	beta-galactosidase	+	3.2.1.23
[Ref.: #22970]	beta-glucosidase	+	3.2.1.21
[Ref.: #22970]	beta-glucuronidase	+	3.2.1.31
[Ref.: #22970]	catalase	+	1.11.1.6
[Ref.: #22970]	cystine arylamidase	-	3.4.11.3
[Ref.: #22970]	cytochrome oxidase	-	1.9.3.1
[Ref.: #22970]	esterase (C 4)	-
[Ref.: #22970]	esterase lipase (C 8)	-
[Ref.: #22970]	leucine arylamidase	+	3.4.11.1
[Ref.: #22970]	lipase (C 14)	-
[Ref.: #22970]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #22970]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #22970]	trypsin	-	3.4.21.4
[Ref.: #22970]	urease	-	3.5.1.5
[Ref.: #22970]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16717]	Sample type/isolated from	tundra soil from a wind-exposed mountain ridge
[Ref.: #16717]	Geographic location (country and/or sea, region)	Lapland, Kilpisjärvi, Mt. Saana (69° 03' N 20° 50' E)
[Ref.: #16717]	Country	Finland
[Ref.: #16717]	Country ISO 3 Code	FIN
[Ref.: #16717]	Continent	Europe
[Ref.: #16717]	Geographic location	69.0500°/20.8333°

[Ref.: #22970]	Enrichment culture	1/4 strength R2A medium
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Tundra

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HM214537 (>99% sequence identity) for Terriglobus saanensis subclade from Microbeatlas

Aquatic Samples	94
Soil Samples	550
Animal Samples	124
Plant Samples	89
Total Samples	857

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16717]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16717]	Terriglobus saanensis strain SP1PR4 16S ribosomal RNA gene, partial sequence	HM214537	1492	ENA	401053 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Terriglobus saanensis SP1PR4	GCA_000179915	complete	GenBank	401053 tax ID	*
[Ref.: #66792]	Terriglobus saanensis SP1PR4	401053.4	complete	PATRIC	401053 tax ID	*
[Ref.: #66792]	Terriglobus saanensis SP1PR4, DSM 23119	649633100	complete	JGI IMG/M	401053 tax ID	*

[Ref.: #16717]

GC-content

57.3 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Terriglobus saanensis SP1PR4 SP1PR4 NCBI: GCA_000179915.2
[Ref.: #69480]	motile	no	71.892	no
[Ref.: #69480]	flagellated	no	93.801	yes
[Ref.: #69480]	gram-positive	no	97.326	yes
[Ref.: #69480]	anaerobic	no	99.101	yes
[Ref.: #69480]	aerobic	yes	86.087	yes
[Ref.: #69480]	halophile	no	91.544	no
[Ref.: #69480]	spore-forming	no	92.811	no
[Ref.: #69480]	thermophile	no	98.994	yes
[Ref.: #69480]	glucose-util	yes	81.096	no
[Ref.: #69480]	glucose-ferment	no	90.284	yes

Availability in culture collections External links

[Ref.: #16717]

Culture collection no.

DSM 23119, ATCC BAA-1853

[Ref.: #69818]

SI-ID 398494

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Terriglobus tenax sp. nov., an exopolysaccharide-producing acidobacterium isolated from rhizosphere soil of a medicinal plant.	Whang KS, Lee JC, Lee HR, Han SI, Chung SH	Int J Syst Evol Microbiol	10.1099/ijs.0.053769-0	2013	*
Phylogeny	Terriglobus aquaticus sp. nov., isolated from an artificial reservoir.	Baik KS, Choi JS, Kwon J, Park SC, Hwang YM, Kim MS, Kim EM, Seo DC, Cho JS, Seong CN	Int J Syst Evol Microbiol	10.1099/ijs.0.050724-0	2013	*
Genetics	Complete genome sequence of Terriglobus saanensis type strain SP1PR4(T), an Acidobacteria from tundra soil.	Rawat SR, Mannisto MK, Starovoytov V, Goodwin L, Nolan M, Hauser L, Land M, Davenport KW, Woyke T, Haggblom MM	Stand Genomic Sci	10.4056/sigs.3036810	2012	*
Metabolism	Comparative genomic and physiological analysis provides insights into the role of Acidobacteria in organic carbon utilization in Arctic tundra soils.	Rawat SR, Mannisto MK, Bromberg Y, Haggblom MM	FEMS Microbiol Ecol	10.1111/j.1574-6941.2012.01381.x	2012	*
Phylogeny	Terriglobus saanensis sp. nov., an acidobacterium isolated from tundra soil.	Mannisto MK, Rawat S, Starovoytov V, Haggblom MM	Int J Syst Evol Microbiol	10.1099/ijs.0.026005-0	2010	*

References

#16717

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23119

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22970

Minna K. Männistö, Suman Rawat,Valentin Starovoytov,Max M. Häggblom: Terriglobus saanensis sp. nov., an acidobacterium isolated from tundra soil. IJSEM 61: 1823 - 1828 2011 ( DOI 10.1099/ijs.0.026005-0 , PubMed 21186292 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69818

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398494.1 )

* These data were automatically processed and therefore are not curated

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Terriglobus saanensis SP1PR4 SP1PR4

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