Actinomycetospora chiangmaiensis | Type strain | DSM 45062, JCM 15998, NBRC 104400, YIM 0006, CCTCC AA 205017, TBRC 8064 | BacDiveID:13499

Strain identifier

BacDive ID: 13499

Type strain:

Species: Actinomycetospora chiangmaiensis

Culture col. no.: DSM 45062, JCM 15998, NBRC 104400, YIM 0006, CCTCC AA 205017, TBRC 8064

Strain history: DSM 45062 <-- J. Wiese <-- Y. Jiang YIM 0006.

NCBI tax ID(s): 1120948 (strain), 402650 (species)

SI-ID 389478

DSM 45062, JCM 15998, LMG 28635, NBRC 104400

Special Collections

Section

Actinomycetospora chiangmaiensis DSM 45062 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil sample from tropical rain forest.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Actinomycetospora*
	Species	**Actinomycetospora chiangmaiensis**
	Full Scientific Name (LPSN)	Actinomycetospora chiangmaiensis Jiang et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32109]	Gram stain	positive

[Ref.: #32109]	Motility	no

[Ref.: #20161]	Colony color	Melon yellow (1028)
[Ref.: #20161]	Incubation period	10-14 days
[Ref.: #20161]	Cultivation medium used	ISP 2

[Ref.: #20161]	Colony color	Melon yellow (1028)
[Ref.: #20161]	Incubation period	10-14 days
[Ref.: #20161]	Cultivation medium used	ISP 3

[Ref.: #20161]	Colony color	Melon yellow (1028)
[Ref.: #20161]	Incubation period	10-14 days
[Ref.: #20161]	Cultivation medium used	ISP 4

[Ref.: #20161]	Colony color	Melon yellow (1028)
[Ref.: #20161]	Incubation period	10-14 days
[Ref.: #20161]	Cultivation medium used	ISP 5

[Ref.: #20161]	Colony color	Melon yellow (1028)
[Ref.: #20161]	Incubation period	10-14 days
[Ref.: #20161]	Cultivation medium used	ISP 6

[Ref.: #20161]	Colony color	Melon yellow (1028)
[Ref.: #20161]	Incubation period	10-14 days
[Ref.: #20161]	Cultivation medium used	ISP 7

Pigment production

yes

[Ref.: #20161]	Multicellular complex forming ability	no
[Ref.: #20161]	Medium Name (multicellularity)	ISP 2

[Ref.: #20161]	Multicellular complex forming ability	no
[Ref.: #20161]	Medium Name (multicellularity)	ISP 3

[Ref.: #20161]	Multicellular complex forming ability	no
[Ref.: #20161]	Medium Name (multicellularity)	ISP 4

[Ref.: #20161]	Multicellular complex forming ability	no
[Ref.: #20161]	Medium Name (multicellularity)	ISP 5

[Ref.: #20161]	Multicellular complex forming ability	no
[Ref.: #20161]	Medium Name (multicellularity)	ISP 6

[Ref.: #20161]	Multicellular complex forming ability	no
[Ref.: #20161]	Medium Name (multicellularity)	ISP 7

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

BHI MEDIUM (DSMZ Medium 215)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

ISP 2

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

ISP 3

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

ISP 4

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

ISP 5

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

ISP 6

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

ISP 7

Culture medium growth

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #12307]			growth	28 °C
[Ref.: #20161]			optimum	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

Oxygen tolerance

aerobe

[Ref.: #32109]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

Observation

quinones: MK-9(H₄), MK-8(H₄)

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #20161]		arabinose ChEBI	-
[Ref.: #32109]		asparagine ChEBI	+	carbon source
[Ref.: #20161]		cellulose ChEBI	-
[Ref.: #20161]		fructose ChEBI	+
[Ref.: #32109]		fructose ChEBI	+	carbon source
[Ref.: #20161]		glucose ChEBI	+
[Ref.: #32109]		glucose ChEBI	+	carbon source
[Ref.: #32109]		glycerol ChEBI	+	carbon source
[Ref.: #32109]		glycine ChEBI	+	carbon source
[Ref.: #32109]		histidine ChEBI	+	carbon source
[Ref.: #32109]		lactose ChEBI	+	carbon source
[Ref.: #20161]		mannitol ChEBI	+
[Ref.: #20161]		myo-inositol ChEBI	+
[Ref.: #20161]		raffinose ChEBI	-
[Ref.: #20161]		rhamnose ChEBI	-
[Ref.: #32109]		rhamnose ChEBI	+	carbon source
[Ref.: #32109]		ribose ChEBI	+	carbon source
[Ref.: #32109]		sorbitol ChEBI	+	carbon source
[Ref.: #20161]		sucrose ChEBI	+
[Ref.: #32109]		sucrose ChEBI	+	carbon source
[Ref.: #20161]		xylose ChEBI	-
[Ref.: #32109]		xylose ChEBI	+	carbon source
		Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #68382]		acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]		alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]		alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]		alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]		alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]		alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]		alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]		beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]		beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]		beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]		cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]		esterase (C 4)	+		* from API zym
[Ref.: #68382]		esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]		leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]		lipase (C 14)	+		* from API zym
[Ref.: #68382]		N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]		naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68382]		trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]		valine arylamidase	+		* from API zym
		Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #20161]	942	not determinedn.d.	-	+	+	+	+	+	-	-	-	+	-	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12307]	Sample type/isolated from	soil sample from tropical rain forest
[Ref.: #12307]	Geographic location (country and/or sea, region)	Chiang Mai
[Ref.: #12307]	Country	Thailand
[Ref.: #12307]	Country ISO 3 Code	THA
[Ref.: #12307]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil from a tropical rainforest
[Ref.: #67770]	Geographic location (country and/or sea, region)	Chiang Mai
[Ref.: #67770]	Country	Thailand
[Ref.: #67770]	Country ISO 3 Code	THA
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil
#Climate	#Hot	#Tropical

What are isolation sources categories?

Global distribution of 16S sequence AM398646 (>99% sequence identity) for Actinomycetospora chiangmaiensis from Microbeatlas

Aquatic Samples	82
Soil Samples	537
Animal Samples	303
Plant Samples	72
Total Samples	994

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12307]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #20161]	Biosafety level	1	German classification

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12307]	Actinostreptospora chiangmaiensis partial 16S rRNA gene, type strain YIM 0006T	AM398646	1476	GenBank ENA	402650 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Actinomycetospora chiangmaiensis DSM 45062	GCA_000379625	scaffold	GenBank ENA	1120948 tax ID
[Ref.: #66792]	Actinomycetospora chiangmaiensis DSM 45062	1120948.3	wgs	PATRIC	1120948 tax ID	*
[Ref.: #66792]	Actinomycetospora chiangmaiensis DSM 45062	2515154015	draft	JGI IMG/M	1120948 tax ID	*

[Ref.: #12307]	GC-content	69.03 mol%
[Ref.: #32109]	GC-content	69 mol%
[Ref.: #67770]	GC-content	69 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	74 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinomycetospora chiangmaiensis DSM 45062 DSM 45062 NCBI: GCA_000379625.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinomycetospora chiangmaiensis DSM 45062 PATRIC: 1120948.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.049	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.539	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	76.584	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.418	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.9	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	86.691	yes

Availability in culture collections External links

Culture collection no.

DSM 45062, JCM 15998, NBRC 104400, YIM 0006, CCTCC AA 205017, TBRC 8064

SI-ID 389478

*

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Actinobacterial Degradation of 2-Hydroxyisobutyric Acid Proceeds via Acetone and Formyl-CoA by Employing a Thiamine-Dependent Lyase Reaction.	Rohwerder T, Rohde MT, Jehmlich N, Purswani J	Front Microbiol	10.3389/fmicb.2020.00691	2020	*
Phylogeny	Actinomycetospora endophytica sp. nov., isolated from wild orchid (Podochilus microphyllus Lindl.) in Thailand.	Sakdapetsiri C, Ngaemthao W, Suriyachadkun C, Duangmal K, Kitpreechavanich V	Int J Syst Evol Microbiol	10.1099/ijsem.0.002938	2018	*
Phylogeny	Actinomycetospora atypica sp. nov., a novel soil actinomycete and emended description of the genus Actinomycetospora.	Zhang Y, Liu C, Zhang J, Shen Y, Li C, He H, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-014-0143-2	2014	*
Phylogeny	Actinomycetospora iriomotensis sp. nov., a novel actinomycete isolated from a lichen sample.	Yamamura H, Ashizawa H, Nakagawa Y, Hamada M, Ishida Y, Otoguro M, Tamura T, Hayakawa M	J Antibiot (Tokyo)	10.1038/ja.2011.15	2011	*
Phylogeny	Actinomycetospora rishiriensis sp. nov., isolated from a lichen.	Yamamura H, Ashizawa H, Nakagawa Y, Hamada M, Ishida Y, Otoguro M, Tamura T, Hayakawa M	Int J Syst Evol Microbiol	10.1099/ijs.0.028753-0	2010	*
Phylogeny	Actinomycetospora chiangmaiensis gen. nov., sp. nov., a new member of the family Pseudonocardiaceae.	Jiang Y, Wiese J, Tang SK, Xu LH, Imhoff JF, Jiang CL	Int J Syst Evol Microbiol	10.1099/ijs.0.64976-0	2008	*
Phylogeny	Actinomycetospora soli sp. nov., isolated from the rhizosphere soil of Averrhoa carambola L.	Chantavorakit T, Duangmal K	Int J Syst Evol Microbiol	10.1099/ijsem.0.005277	2022	*

References

#12307

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45062

#20161

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32109

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28354 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82691

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389478.1 )

#28354

IJSEM 408 2008 ( DOI 10.1099/ijs.0.64976-0 , PubMed 18218940 )

* These data were automatically processed and therefore are not curated

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