Name: Streptoalloteichus tenebrarius A12253. 1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 13493

Type strain:

Species: Streptoalloteichus tenebrarius

Strain Designation: A12253. 1

Culture col. no.: DSM 40477, ATCC 17920, CBS 697.72, IFO 16176, ISP 5477, JCM 4838, NBRC 16176, NBRC 16177, NRRL B-12390T, RIA 1357, NRRL B-12390, BCRC 12593, IFO 13396, IFO 16175, IFO 16177, IFO 16188, LMG 5988, NBIMCC 841, NBRC 16175, NBRC 16188, NCIMB 11028, NRRL 3816, VKM Ac-1870

Strain history: KCC S-0838 <-- IFO 13396 <-- SAJ <-- ISP 5477 <-- C. H. Higgins A12253.1.

NCBI tax ID(s): 1933 (species)

SI-ID 13860

LMG 5988, ATCC 17920, DSM 40477, IFO 13396, JCM 4838, NCIB 11028, IFO 16176, CCRC 12593, IFO 16175, NCIMB 11028, NRRL 3816, NRRL B-12390, IFO 16188, VKM Ac-1870, CBS 697.72, NBRC 16175, NBRC 16188, NBRC 13396, BCRC 12593, NBRC 16176, NBIMCC 841, NBRC 16177

Special Collections

Section

Streptoalloteichus tenebrarius A12253. 1 is a spore-forming, Gram-positive, rod-shaped bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
Gram-positive
rod-shaped
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Streptoalloteichus*
	Species	**Streptoalloteichus tenebrarius**
	Full Scientific Name (LPSN)	Streptoalloteichus tenebrarius (ex Higgins and Kastner 1967) Tamura et al. 2008

Synonym

"Streptomyces tenebrarius"

Information on morphological and physiological properties Morphology

[Ref.: #32294]	Gram stain	positive

[Ref.: #32294]	Cell length	1.25 µm

[Ref.: #32294]	Cell width	0.75 µm

[Ref.: #32294]	Cell shape	rod-shaped

[Ref.: #32294]

Pigment production

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #9570]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #9570]	growth	28 °C
[Ref.: #18598]	optimum	28 °C
[Ref.: #32294]	growth	20-37 °C
[Ref.: #32294]	optimum	25 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32294]

Ability of spore formation

yes

[Ref.: #9570]

Name of produced compound

nebramycin

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32294]		NaCl		growth	0-8	%

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Observation

quinones: MK-10(H₆), MK-10(H₄), MK-9(H₆), MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18598]	arabinose ChEBI	-
[Ref.: #32294]	arabinose ChEBI	+	carbon source
[Ref.: #18598]	cellulose ChEBI	+/-
[Ref.: #18598]	fructose ChEBI	+
[Ref.: #18598]	glucose ChEBI	+
[Ref.: #32294]	maltose ChEBI	+	carbon source
[Ref.: #18598]	mannitol ChEBI	-
[Ref.: #18598]	myo-inositol ChEBI	+
[Ref.: #32294]	myo-inositol ChEBI	+	carbon source
[Ref.: #18598]	raffinose ChEBI	-
[Ref.: #18598]	rhamnose ChEBI	-
[Ref.: #32294]	salicin ChEBI	+	carbon source
[Ref.: #18598]	sucrose ChEBI	+/-
[Ref.: #18598]	xylose ChEBI	-
[Ref.: #32294]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #67770]		tobramycin ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #32294]	gelatinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18598]	241	not determinedn.d.	+	+	+	+	+	+	+	+	-	+	+	-	+	+	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9570]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hermisillo, Sonora
[Ref.: #67770]	Country	Mexico
[Ref.: #67770]	Country ISO 3 Code	MEX
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB297962 (>99% sequence identity) for Streptoalloteichus tenebrarius from Microbeatlas

Aquatic Samples	1
Soil Samples	8
Animal Samples
Plant Samples	1
Total Samples	10

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18598]	Biosafety level	1	German classification
[Ref.: #9570]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #9570]	Streptoalloteichus tenebrarius gene for 16S rRNA, partial sequence, strain: NBRC 16177	AB184722	1450	GenBank ENA	1933 tax ID
[Ref.: #67770]	Streptomyces tenebrarius gene for 16S rRNA, partial sequence, strain: NBRC 16175	AB184721	1469	GenBank ENA	1933 tax ID
[Ref.: #20218]	Streptomyces tenebrarius partial gene for 16S ribosomal RNA methylase, clone nebM	AJ550991	267	GenBank ENA	1933 tax ID	*
[Ref.: #20218]	Streptomyces tenebrarius gene for 16S rRNA, partial sequence	AB297962	1473	GenBank ENA	1933 tax ID	*
[Ref.: #20218]	Streptoalloteichus tenebrarius gene for 16S ribosomal RNA, partial sequence, strain: JCM 4838	D44400	120	GenBank ENA	1933 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptoalloteichus tenebrarius DSM 40477	2596583539	draft	JGI IMG/M	1933 tax ID	*
[Ref.: #66792]	Streptoalloteichus tenebrarius ATCC 17920	651716755	draft	JGI IMG/M	1933 tax ID	*
[Ref.: #66792]	Streptoalloteichus tenebrarius DSM 40477	651716781	draft	JGI IMG/M	1933 tax ID	*
[Ref.: #66792]	Streptoalloteichus tenebrarius DSM 40477	GCA_024171885	scaffold	GenBank ENA	1933 tax ID	*

[Ref.: #9570]	GC-content	71.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #32294]	GC-content	71.6 mol%

Availability in culture collections External links

[Ref.: #9570]

Culture collection no.

DSM 40477, ATCC 17920, CBS 697.72, IFO 16176, ISP 5477, JCM 4838, NBRC 16176, NBRC 16177, NRRL B-12390T, RIA 1357, NRRL B-12390, BCRC 12593, IFO 13396, IFO 16175, IFO 16177, IFO 16188, LMG 5988, NBIMCC 841, NBRC 16175, NBRC 16188, NCIMB 11028, NRRL 3816, VKM Ac-1870

[Ref.: #82685]

SI-ID 13860

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Structural Elucidation of Tenebrathin: Cytotoxic C-5-Substituted gamma-Pyrone with a Nitroaryl Side Chain from Streptoalloteichus tenebrarius.	Hoshino S, Mitsuhashi T, Kikuchi T, Wong CP, Morita H, Awakawa T, Fujita M, Abe I	Org Lett	10.1021/acs.orglett.9b02443	2019	*
Phylogeny	Classification of 'Streptomyces tenebrarius' Higgins and Kastner as Streptoalloteichus tenebrarius nom. rev., comb. nov., and emended description of the genus Streptoalloteichus.	Tamura T, Ishida Y, Otoguro M, Hatano K, Suzuki K	Int J Syst Evol Microbiol	10.1099/ijs.0.65272-0	2008	*

References

#9570

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40477

#18598

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#32294

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28534 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#82685

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13860.1 )

#28534

IJSEM 688 2008 ( DOI 10.1099/ijs.0.65272-0 , PubMed 18319479 )

* These data were automatically processed and therefore are not curated

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