Name: Saccharothrix yanglingensis Hhs.015
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13489

Type strain:

Species: Saccharothrix yanglingensis

Strain Designation: Hhs.015

Culture col. no.: DSM 45665, CGMCC 4.5627, KCTC 19722

Strain history: <- L Huang, Northwest A&F Univ., China

NCBI tax ID(s): 1873460 (species)

SI-ID 397869

DSM 45665

Section

Saccharothrix yanglingensis Hhs.015 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from roots of cucumber seedlings.

Gram-positive
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Saccharothrix*
	Species	"Saccharothrix yanglingensis"
	Full Scientific Name (LPSN)	Saccharothrix yanglingensis Yan et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive

Multimedia content

[Ref.: #18032]

Caption:

Medium 554 28°C

[Ref.: #18032]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18032]

Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

[Ref.: #18032]

Culture medium growth

[Ref.: #18032]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18032]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #18032]			growth	28 °C
[Ref.: #67771]			growth	28 °C

[Ref.: #18032]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18032]	Sample type/isolated from	roots of cucumber seedlings
[Ref.: #18032]	Geographic location (country and/or sea, region)	Shaanxi Province,Yangling
[Ref.: #18032]	Country	China
[Ref.: #18032]	Country ISO 3 Code	CHN
[Ref.: #18032]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From root of cucumber seedlings
[Ref.: #67771]	Geographic location (country and/or sea, region)	Yangling, Shaanxi province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GQ284639 (>99% sequence identity) for Saccharothrix from Microbeatlas

Aquatic Samples	4
Soil Samples	8
Animal Samples	1
Plant Samples	24
Total Samples	37

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18032]	Saccharothrix yanglingensis 16S ribosomal RNA gene, partial sequence	GQ284639	1510	ENA	659496 tax ID

[Ref.: #18032]

GC-content

70.94 mol%

Availability in culture collections External links

[Ref.: #18032]

Culture collection no.

DSM 45665, CGMCC 4.5627, KCTC 19722

[Ref.: #82681]

SI-ID 397869

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Investigation on the Antifungal Ingredients of Saccharothrix Yanglingensis Hhs.015, an Antagonistic Endophytic Actinomycete Isolated from Cucumber Plant.	Wang H, Tian R, Tian Q, Yan X, Huang L, Ji Z	Molecules	10.3390/molecules24203686	2019	*
Metabolism	Transcriptome analysis of Valsa mali reveals its response mechanism to the biocontrol actinomycete Saccharothrix yanglingensis Hhs.015.	Liu C, Fan D, Li Y, Chen Y, Huang L, Yan X	BMC Microbiol	10.1186/s12866-018-1225-5	2018	*
Metabolism	Expression and characterization of a novel chitinase with antifungal activity from a rare actinomycete, Saccharothrix yanglingensis Hhs.015.	Lu Y, Wang N, He J, Li Y, Gao X, Huang L, Yan X	Protein Expr Purif	10.1016/j.pep.2017.10.013	2017	*
Metabolism	Study on Interactions between the Major Apple Valsa Canker Pathogen Valsa mali and Its Biocontrol Agent Saccharothrix yanglingensis Hhs.015 Using RT-qPCR.	Fan D, Li Y, Zhao L, Li Z, Huang L, Yan X	PLoS One	10.1371/journal.pone.0162174	2016	*
Phylogeny	Saccharothrix isguenensis sp. nov., an actinobacterium isolated from desert soil.	Bouznada K, Bouras N, Mokrane S, Chaabane Chaouch F, Zitouni A, Potter G, Sproer C, Klenk HP, Sabaou N	Int J Syst Evol Microbiol	10.1099/ijsem.0.001430	2016	*
Phylogeny	Saccharothrix yanglingensis sp. nov., an antagonistic endophytic actinomycete isolated from cucumber plant.	Yan X, Huang LL, Tu X, Gao XN, Kang ZS	Antonie Van Leeuwenhoek	10.1007/s10482-011-9631-9	2011	*
Biotechnology	Optimization of the fermentation process of actinomycete strain hhs.015.	Wang X, Huang L, Kang Z, Buchenauer H, Gao X	J Biomed Biotechnol	10.1155/2010/141876	2010	*
	A Novel Protein Elicitor BAR11 From Saccharothrix yanglingensis Hhs.015 Improves Plant Resistance to Pathogens and Interacts With Catalases as Targets.	Zhang Y, Yan X, Guo H, Zhao F, Huang L	Front Microbiol	10.3389/fmicb.2018.00700	2018	*
	Saccharothrix yanglingensis Strain Hhs.015 Is a Promising Biocontrol Agent on Apple Valsa Canker.	Li Z, Gao X, Kang Z, Huang L, Fan D, Yan X, Kang Z	Plant Dis	10.1094/PDIS-02-15-0190-RE	2015	*

References

#18032

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45665

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#82681

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397869.1 )

* These data were automatically processed and therefore are not curated

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