Name: Saccharothrix hoggarensis Sa181
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13487

Type strain:

Species: Saccharothrix hoggarensis

Strain Designation: Sa181

Culture col. no.: DSM 45457, CCUG 60214

Strain history: <- N. Sabaou, LPBVB, Kouba, Algerien; Sa181

NCBI tax ID(s): 913853 (species)

SI-ID 396982

DSM 45457, CCUG 60214

Section

Saccharothrix hoggarensis Sa181 is an aerobe, spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from Saharan soil.

Gram-positive
rod-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Saccharothrix*
	Species	**Saccharothrix hoggarensis**
	Full Scientific Name (LPSN)	Saccharothrix hoggarensis Boubetra et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30577]	Gram stain	positive

[Ref.: #30577]	Cell length	1.25 µm

[Ref.: #30577]	Cell width	0.9 µm

[Ref.: #30577]	Cell shape	rod-shaped

[Ref.: #30577]	Motility	no

[Ref.: #69396]	Colony color	Brown beige (1011)
[Ref.: #69396]	Cultivation medium used	ISP 3

[Ref.: #69396]	Colony color	Ivory (1014)
[Ref.: #69396]	Cultivation medium used	ISP 4

[Ref.: #69396]	Colony color	Ivory (1014)
[Ref.: #69396]	Cultivation medium used	ISP 6

[Ref.: #69396]	Colony color	Ivory (1014)
[Ref.: #69396]	Cultivation medium used	suter with tyrosine

[Ref.: #69396]	Colony color	Ivory (1014)
[Ref.: #69396]	Cultivation medium used	suter without tyrosine

[Ref.: #69396]	Colony color	Oyster white (1013)
[Ref.: #69396]	Cultivation medium used	ISP 7

[Ref.: #69396]	Colony color	Sand yellow (1002)
[Ref.: #69396]	Cultivation medium used	ISP 2

[Ref.: #69396]	Colony color	Sand yellow (1002)
[Ref.: #69396]	Cultivation medium used	ISP 5

[Ref.: #30577]	Pigment production	yes
[Ref.: #69396]	Pigment production	no
[Ref.: #69396]	Pigment name	Melanin
[Ref.: #69396]	Pigment production	yes
[Ref.: #69396]	Pigmentation color	Sand yellow (1002), ivory (1014)
[Ref.: #69396]	Pigment name	soluble pigment

[Ref.: #69396]	Multicellular complex forming ability	no
[Ref.: #69396]	Multicellular complex name	Aerial mycelium
[Ref.: #69396]	Medium Name (multicellularity)	ISP 2

[Ref.: #69396]	Multicellular complex forming ability	no
[Ref.: #69396]	Multicellular complex name	Aerial mycelium
[Ref.: #69396]	Medium Name (multicellularity)	ISP 3

[Ref.: #69396]	Multicellular complex forming ability	no
[Ref.: #69396]	Multicellular complex name	Aerial mycelium
[Ref.: #69396]	Medium Name (multicellularity)	ISP 4

[Ref.: #69396]	Multicellular complex forming ability	no
[Ref.: #69396]	Multicellular complex name	Aerial mycelium
[Ref.: #69396]	Medium Name (multicellularity)	ISP 5

[Ref.: #69396]	Multicellular complex forming ability	yes
[Ref.: #69396]	Multicellular complex name	Aerial mycelium
[Ref.: #69396]	Multicellular complex color	Light ivory (1015)
[Ref.: #69396]	Medium Name (multicellularity)	ISP 6

[Ref.: #69396]	Multicellular complex forming ability	no
[Ref.: #69396]	Multicellular complex name	Aerial mycelium
[Ref.: #69396]	Medium Name (multicellularity)	ISP 7

[Ref.: #69396]	Multicellular complex forming ability	no
[Ref.: #69396]	Multicellular complex name	Aerial mycelium
[Ref.: #69396]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69396]	Multicellular complex forming ability	no
[Ref.: #69396]	Multicellular complex name	Aerial mycelium
[Ref.: #69396]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #17222]

Caption:

Medium 535 28°C

[Ref.: #17222]

Intellectual property rights:

[Ref.: #69396]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69396]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69396]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69396]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17222]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #17222]

Culture medium growth

[Ref.: #17222]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17222]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17222]	growth	28 °C
[Ref.: #30577]	growth	20-45 °C
[Ref.: #30577]	optimum	30 °C

[Ref.: #17222]	Temperature range	mesophilic
[Ref.: #30577]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30577]			optimum	7
[Ref.: #30577]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30577]

Oxygen tolerance

aerobe

[Ref.: #30577]

Ability of spore formation

yes

	Salt		Salt conc.
[Ref.: #30577]	NaCl	growth	04-05	%
[Ref.: #30577]	NaCl	optimum	4.5	%
[Ref.: #69396]	NaCl	growth	0-2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30577]	acetate ChEBI	+	carbon source
[Ref.: #30577]	arabinose ChEBI	+	carbon source
[Ref.: #69396]	arabinose ChEBI	+	growth
[Ref.: #30577]	cellobiose ChEBI	+	carbon source
[Ref.: #69396]	cellulose ChEBI	+/-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30577]	esculin ChEBI	+	hydrolysis
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #30577]	fructose ChEBI	+	carbon source
[Ref.: #69396]	fructose ChEBI	+	growth
[Ref.: #30577]	galactose ChEBI	+	carbon source
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #30577]	glucose ChEBI	+	carbon source
[Ref.: #69396]	glucose ChEBI	+	growth
[Ref.: #30577]	glycerol ChEBI	+	carbon source
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69396]	inositol ChEBI	+	growth
[Ref.: #30577]	lactate ChEBI	+	carbon source
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30577]	maltose ChEBI	+	carbon source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69396]	mannose ChEBI	+/-	growth
[Ref.: #30577]	melibiose ChEBI	+	carbon source
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #30577]	proline ChEBI	+	carbon source
[Ref.: #30577]	propionate ChEBI	+	carbon source
[Ref.: #30577]	pyruvate ChEBI	+	carbon source
[Ref.: #69396]	raffinose ChEBI	+	growth
[Ref.: #30577]	rhamnose ChEBI	+	carbon source
[Ref.: #69396]	rhamnose ChEBI	+	growth
[Ref.: #30577]	ribose ChEBI	+	carbon source
[Ref.: #30577]	sorbitol ChEBI	+	carbon source
[Ref.: #30577]	succinate ChEBI	+	carbon source
[Ref.: #30577]	sucrose ChEBI	+	carbon source
[Ref.: #69396]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30577]	tween 80 ChEBI	+	carbon source
[Ref.: #30577]	urea ChEBI	+	carbon source
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #30577]	xylose ChEBI	+	carbon source
[Ref.: #69396]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #30577]	gelatinase	+
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne, API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69396]	3889	-	-	-	+	-	+	-	+	+	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69396]	6073	not determinedn.d.	+	+/-	+/-	+	+	+	+/-	+	+	+/-	+/-	+	+	-	+	+	+	+/-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17222]	Sample type/isolated from	Saharan soil
[Ref.: #17222]	Geographic location (country and/or sea, region)	Hoggar region, Tamanrasset (22° 47' 0'' N 5° 31' 0'' E)
[Ref.: #17222]	Country	Algeria
[Ref.: #17222]	Country ISO 3 Code	DZA
[Ref.: #17222]	Continent	Africa
[Ref.: #17222]	Geographic location	22.7833°/5.5167°

[Ref.: #62238]	Sample type/isolated from	Algerian Saharan soil
[Ref.: #62238]	Sampling date	2000
[Ref.: #62238]	Geographic location (country and/or sea, region)	Algerian Sahara
[Ref.: #62238]	Country	Algeria
[Ref.: #62238]	Country ISO 3 Code	DZA
[Ref.: #62238]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Desert
#Climate	#Hot	#Arid

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17222]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17222]	Saccharothrix hoggarensis strain SA181 16S ribosomal RNA gene, complete sequence	HQ399564	1505	ENA	913853 tax ID

Availability in culture collections External links

[Ref.: #17222]

Culture collection no.

DSM 45457, CCUG 60214

[Ref.: #82679]

SI-ID 396982

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharothrix isguenensis sp. nov., an actinobacterium isolated from desert soil.	Bouznada K, Bouras N, Mokrane S, Chaabane Chaouch F, Zitouni A, Potter G, Sproer C, Klenk HP, Sabaou N	Int J Syst Evol Microbiol	10.1099/ijsem.0.001430	2016	*
Phylogeny	Saccharothrix ecbatanensis sp. nov., an actinobacterium isolated from soil.	Mohammadipanah F, Hamedi J, Schumann P, Sproer C, Carmen Montero-Calasanz MD, Klenk HP	Int J Syst Evol Microbiol	10.1099/ijsem.0.000607	2015	*
Phylogeny	Saccharothrix hoggarensis sp. nov., an actinomycete isolated from Saharan soil.	Boubetra D, Zitouni A, Bouras N, Mathieu F, Lebrihi A, Schumann P, Sproer C, Klenk HP, Sabaou N	Int J Syst Evol Microbiol	10.1099/ijs.0.039099-0	2012	*

References

#17222

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45457

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30577

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26908 (see below)

#62238 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60214

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69396

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#82679

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396982.1 )

#26908

IJSEM 549 2013 ( DOI 10.1099/ijs.0.039099-0 , PubMed 22523169 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Saccharothrix hoggarensis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF