Name: Saccharothrix algeriensis SA 233
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 13485

Type strain:

Species: Saccharothrix algeriensis

Strain Designation: SA 233

Culture col. no.: DSM 44581, NRRL B-24137, JCM 13242, NBRC 101915

Strain history: DSM 44581 <-- NRRL B-24137 <-- A. Zitouni et al. SA 233.

NCBI tax ID(s): 173560 (species)

SI-ID 97720

NRRL B-24137, DSM 44581, JCM 13242, NBRC 101915

Special Collections

Section

Saccharothrix algeriensis SA 233 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from saharan soil.

Gram-positive
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Saccharothrix*
	Species	**Saccharothrix algeriensis**
	Full Scientific Name (LPSN)	Saccharothrix algeriensis Zitouni et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #29924]	Gram stain	positive

[Ref.: #29924]	Cell shape	rod-shaped

[Ref.: #29924]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90

[Ref.: #29924]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11878]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #11878]

Culture medium growth

[Ref.: #11878]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11878]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #11878]	growth	28 °C
[Ref.: #29924]	growth	18-45 °C
[Ref.: #29924]	optimum	31.5 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #29924]			optimum	7
[Ref.: #29924]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29924]

Oxygen tolerance

aerobe

[Ref.: #29924]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29924]		NaCl		growth	4	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29924]	acetate ChEBI	+	carbon source
[Ref.: #29924]	citrate ChEBI	+	carbon source
[Ref.: #29924]	esculin ChEBI	+	hydrolysis
[Ref.: #29924]	fructose ChEBI	+	carbon source
[Ref.: #29924]	galactose ChEBI	+	carbon source
[Ref.: #29924]	glucose ChEBI	+	carbon source
[Ref.: #29924]	glycerol ChEBI	+	carbon source
[Ref.: #29924]	maltose ChEBI	+	carbon source
[Ref.: #29924]	nitrate ChEBI	+	reduction
[Ref.: #29924]	pyruvate ChEBI	+	carbon source
[Ref.: #29924]	succinate ChEBI	+	carbon source
[Ref.: #29924]	trehalose ChEBI	+	carbon source
[Ref.: #29924]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29924]		catalase	+	1.11.1.6
[Ref.: #29924]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11878]	Sample type/isolated from	saharan soil
[Ref.: #11878]	Country	Algeria
[Ref.: #11878]	Country ISO 3 Code	DZA
[Ref.: #11878]	Continent	Africa

[Ref.: #67770]	Sample type/isolated from	Saharan soil at a palm grove
[Ref.: #67770]	Geographic location (country and/or sea, region)	Adrar
[Ref.: #67770]	Country	Algeria
[Ref.: #67770]	Country ISO 3 Code	DZA
[Ref.: #67770]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Desert
#Climate	#Hot	#Arid

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY054972 (>99% sequence identity) for Saccharothrix from Microbeatlas

Aquatic Samples
Soil Samples	4
Animal Samples	1
Plant Samples	1
Total Samples	6

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11878]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29924]	Saccharothrix algeriensis strain NRRL B-24137 16S ribosomal RNA gene, partial sequence	AY054972	1429	GenBank ENA	173560 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Saccharothrix algeriensis DSM 44581	GCA_016907655	contig	GenBank ENA	173560 tax ID	*
[Ref.: #66792]	Saccharothrix algeriensis strain DSM 44581	173560.4	wgs	PATRIC	173560 tax ID	*
[Ref.: #66792]	Saccharothrix algeriensis strain NRRL B-24137	173560.5	complete	PATRIC	173560 tax ID	*
[Ref.: #66792]	Saccharothrix algeriensis DSM 44581	2893654320	draft	JGI IMG/M	173560 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Saccharothrix algeriensis strain NRRL B-24137 PATRIC: 173560.5
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Saccharothrix algeriensis strain NRRL B-24137 PATRIC: 173560.5
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.349	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.117	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	79.176	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.324	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.6	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90	no

Availability in culture collections External links

[Ref.: #11878]

Culture collection no.

DSM 44581, NRRL B-24137, JCM 13242, NBRC 101915

[Ref.: #82677]

SI-ID 97720

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Metabolism	Saccharothrix algeriensis NRRL B-24137, the first non-Streptomyces actinobacterium, produces holomycin after cystine feeding.	Merrouche R, Yekkour A, Coppel Y, Bouras N, Zitouni A, Mathieu F, Sabaou N	Arch Microbiol	10.1007/s00203-020-01971-3	2020	*
Metabolism	A new dithiolopyrrolone antibiotic triggered by a long fermentation of Saccharothrix algeriensis NRRL B-24137 in sorbic acid-amended medium.	Merrouche R, Yekkour A, Coppel Y, Bouras N, Zitouni A, Lebrihi A, Mathieu F, Sabaou N	Lett Appl Microbiol	10.1111/lam.13207	2019	*
Metabolism	Effective biosynthesis of benzoyl-pyrrothine dithiolopyrrolone antibiotic by cinnamic acid-precursor addition in culture of Saccharothrix algeriensis NRRL B-24137.	Merrouche R, Yekkour A, Coppel Y, Bouras N, Lamari L, Zitouni A, Mathieu F, Lebrihi A, Sabaou N	Lett Appl Microbiol	10.1111/lam.13101	2019	*
Metabolism	The final acylation step in aromatic dithiolopyrrolone biosyntheses: identification and characterization of the first bacterium N-benzoyltransferase from Saccharothrix algeriensis NRRL B-24137.	Saker S, Chacar S, Mathieu F	Enzyme Microb Technol	10.1016/j.enzmictec.2015.02.005	2015	*
Enzymology	Identification and characterization of the biosynthetic gene cluster of thiolutin, a tumor angiogenesis inhibitor, in Saccharothrix algeriensis NRRL B-24137.	Huang S, Tong MH, Qin Z, Deng Z, Deng H, Yu Y	Anticancer Agents Med Chem	10.2174/1871520614666141027145200	2015	*
Metabolism	Identification of two putative acyltransferase genes potentially implicated in dithiolopyrrolone biosyntheses in Saccharothrix algeriensis NRRL B-24137.	Saker S, Lebrihi A, Mathieu F	Appl Biochem Biotechnol	10.1007/s12010-014-0896-0	2014	*
Enzymology	Enzymatic synthesis of dithiolopyrrolone antibiotics using cell-free extract of Saccharothrix algeriensis NRRL B-24137 and biochemical characterization of two pyrrothine N-acyltransferases in this extract.	Saker S, Almousa Almaksour Z, Chorin AC, Lebrihi A, Mathieu F	J Microbiol Biotechnol	10.4014/jmb.1309.09035	2014	*
Metabolism	New dithiolopyrrolone antibiotics induced by adding sorbic acid to the culture medium of Saccharothrix algeriensis NRRL B-24137.	Merrouche R, Bouras N, Coppel Y, Mathieu F, Sabaou N, Lebrihi A	FEMS Microbiol Lett	10.1111/j.1574-6968.2011.02246.x	2011	*
Enzymology	Dithiolopyrrolone antibiotic formation induced by adding valeric acid to the culture broth of Saccharothrix algeriensis.	Merrouche R, Bouras N, Coppel Y, Mathieu F, Monje MC, Sabaou N, Lebrihi A	J Nat Prod	10.1021/np900808u	2010	*
Metabolism	Expression of pyrrothine N-acyltransferase activities in Saccharothrix algeriensis NRRL B-24137: new insights into dithiolopyrrolone antibiotic biosynthetic pathway.	Chorin AC, Bijeire L, Monje MC, Baziard G, Lebrihi A, Mathieu F	J Appl Microbiol	10.1111/j.1365-2672.2009.04496.x	2009	*
Metabolism	Effect of amino acids containing sulfur on dithiolopyrrolone antibiotic productions by Saccharothrix algeriensis NRRL B-24137.	Bouras N, Mathieu F, Sabaou N, Lebrihi A	J Appl Microbiol	10.1111/j.1365-2672.2005.02762.x	2006	*
Phylogeny	Saccharothrix algeriensis sp. nov., isolated from Saharan soil.	Zitouni A, Lamari L, Boudjella H, Badji B, Sabaou N, Gaouar A, Mathieu F, Lebrihi A, Labeda DP	Int J Syst Evol Microbiol	10.1099/ijs.0.02679-0	2004	*
	Saccharothrix Algeriensis NRRL B-24137 Potentiates Chemical Fungicide Carbendazim in Treating Fusarium Oxysporum f.sp. Vasinfectum-Induced Cotton Wilt Disease.	Asif R, Siddique MH, Zakki SA, Rasool MH, Waseem M, Hayat S, Muzammil S	Dose Response	10.1177/1559325820960346	2020	*

References

#11878

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44581

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29924

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26295 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82677

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID97720.1 )

#26295

IJSEM 1377 2004 ( DOI 10.1099/ijs.0.02679-0 , PubMed 15280317 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Saccharothrix algeriensis in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Saccharothrix algeriensis strain NRRL B-24137

Saccharothrix algeriensis strain NRRL B-24137

Change proposal

Change proposal