Brevibacterium iodinum (CIP 59.15, ATCC 9897, CCTM La 2749)

Name: Brevibacterium iodinum (CIP 59.15, ATCC 9897, CCTM La 2749)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134750

Type strain

Culture col. no. CIP 59.15 ATCC 9897 CCTM La 2749 NCIMB 8179 NCDO 753 2 more

NCBI tax ID(s) 31943

Special Collections CIP

Links

Brevibacterium iodinum CIP 59.15 is an obligate aerobe, mesophilic, Gram-positive prokaryote that was isolated from Food, Milk.

Gram-positive rod-shaped obligate aerobe mesophilic genome sequence

Name and taxonomic classification

SI-ID 311075

LMG 2200,ATCC 9897,CCUG 757,LMG 2201,NCDO 753,NCIB 8179,NCMB 419,NCTC 9742,NCIMB 8179,NCIMB 419,CIP 59.15

@ref 20215

Last LPSN update 2025-12-16 10:02:08

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Brevibacteriaceae

Genus Brevibacterium

Species Brevibacterium iodinum

Full scientific name Brevibacterium iodinum (ex Davis 1939) Collins et al. 1981

Synonyms (1)

"Arthrobacter iodinum"

BacDive ID	Other strains from **Brevibacterium iodinum** (4)	Type strain
1840	B. iodinum DSM 20626, ATCC 49514, NCDO 613, JCM 2591, ... (type strain)
1839	B. iodinum Delft, DSM 433, DSM 50269, IMG 1583
144238	B. iodinum CCUG 23894, IMRU 26, ATCC 15728, LMG 2202
144239	B. iodinum CCUG 23895, ATCC 15729, LMG 2203

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125438			90.5
125438	positive		90.633
33392	positive	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Composition	Medium link
33392	MEDIUM 3 - Columbia agar	Columbia agar (39.000 g);distilled water (1000.000 ml)
33392	CIP Medium 72		Medium recipe at CIP
33392	CIP Medium 3		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
33392	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
33392	obligate aerobe
125438	aerobe	90.972

Spore formation

@ref	Spore formation	Confidence
125439		93.3

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
33392	17632 ChEBI	nitrate	+	reduction
33392	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
33392	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
33392	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
33392	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
33392	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
33392	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation

33392

Sample typeFood, Milk

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
33392	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	55312_A01 assembly for Brevibacterium iodinum NCTC9742	contig	GCA_900445875	31943.4	2808606793	31943	76.7

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Brevibacterium iodinum NCTC9742
NCBI: GCA_900445875

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	93.30	no
125439	motility	BacteriaNetⓘ	no	52.80	no
125439	gram_stain	BacteriaNetⓘ	positive	88.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	70.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Brevibacterium iodinum strain NCTC9742
PATRIC: 31943.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.63	no
125438	anaerobic	anaerobicⓘ	no	98.44	yes
125438	spore-forming	spore-formingⓘ	no	74.22	no
125438	aerobic	aerobicⓘ	yes	90.97	no
125438	thermophilic	thermophileⓘ	no	97.00	no
125438	flagellated	motile2+ⓘ	no	90.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Diversity and evolution of the phenazine biosynthesis pathway.	Mavrodi DV, Peever TL, Mavrodi OV, Parejko JA, Raaijmakers JM, Lemanceau P, Mazurier S, Heide L, Blankenfeldt W, Weller DM, Thomashow LS.	Appl Environ Microbiol	10.1128/aem.02009-09	2010
Metabolism	Functional analysis of genes for biosynthesis of pyocyanin and phenazine-1-carboxamide from Pseudomonas aeruginosa PAO1.	Mavrodi DV, Bonsall RF, Delaney SM, Soule MJ, Phillips G, Thomashow LS.	J Bacteriol	10.1128/jb.183.21.6454-6465.2001	2001
Phylogeny	Identification of Brevibacterium from clinical sources.	Pitcher DG, Malnick H.	J Clin Pathol	10.1136/jcp.37.12.1395	1984

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#33392	Collection of Institut Pasteur ; Curators of the CIP; CIP 59.15
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Brevibacterium iodinum (CIP 59.15, ATCC 9897, CCTM La 2749)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900445875

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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