Name: Clostridioides difficile CIP 109239
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134703

Type strain:

Species: Clostridioides difficile

Culture col. no.: CIP 109239

Strain history: CIP <- 2006, J.P. Carlier, Inst. Pasteur, Paris, France: strain AIP 162-05, Clostridium difficile <- Montpellier Hosp., Montpellier, France

NCBI tax ID(s): 1496 (species)

SI-ID 361808

CIP 109239

Other strains from Clostridioides difficile

Section

Clostridioides difficile CIP 109239 is an anaerobe, mesophilic, Gram-positive bacterium of the family Peptostreptococcaceae.

Gram-positive
rod-shaped
anaerobe
mesophilic
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Peptostreptococcaceae*
	Genus	*Clostridioides*
	Species	**Clostridioides difficile**
	Full Scientific Name (LPSN)	Clostridioides difficile (Hall and O'Toole 1935) Lawson et al. 2016

	Synonym	"Bacillus* difficilis"*
	Synonym	"Peptoclostridium* difficile"*
	Synonym	Clostridium difficile

Information on morphological and physiological properties Morphology

[Ref.: #33285]	Gram stain	positive

[Ref.: #33285]	Cell shape	rod-shaped

[Ref.: #33285]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #33285]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #33285]

Culture medium growth

[Ref.: #33285]

Culture medium composition

expand / minimize

[Ref.: #33285]

Culture medium

CIP Medium 20

[Ref.: #33285]

Culture medium growth

[Ref.: #33285]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #33285]

Culture medium

CIP Medium 45

[Ref.: #33285]

Culture medium growth

[Ref.: #33285]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #33285]			growth	37 °C

[Ref.: #33285]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #33285]

Oxygen tolerance

anaerobe

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #33285]		nitrate ChEBI	-	reduction
[Ref.: #33285]		nitrite ChEBI	+	reduction

	Metabolite production	Metabolite	Production
[Ref.: #33285]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #33285]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #33285]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #33285]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #33285]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #33285]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #33285]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #33285]	11740	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #33285]	Sample type/isolated from	Faeces
[Ref.: #33285]	Geographic location (country and/or sea, region)	Montpellier
[Ref.: #33285]	Country	France
[Ref.: #33285]	Country ISO 3 Code	FRA
[Ref.: #33285]	Continent	Europe
[Ref.: #33285]	Isolation date	2005

[Ref.: #33285]	Geographic location (country and/or sea, region)	Montpellier
[Ref.: #33285]	Country	France
[Ref.: #33285]	Country ISO 3 Code	FRA
[Ref.: #33285]	Continent	Europe
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #33285]

Biosafety level

Risk group (French classification)

Availability in culture collections External links

[Ref.: #33285]

Culture collection no.

CIP 109239

[Ref.: #92173]

SI-ID 361808

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#33285 Collection of Institut Pasteur ; Curators of the CIP; CIP 109239

#68382

Automatically annotated from API zym .

#92173

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID361808.1 )

* These data were automatically processed and therefore are not curated

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