Shewanella decolorationis (CIP 108688, IAM 15094, CCTCC M 203093)

Name: Shewanella decolorationis (CIP 108688, IAM 15094, CCTCC M 203093)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134698

Type strain

Strain Designation S12

Culture col. no. CIP 108688 IAM 15094 CCTCC M 203093 NBRC 103170 KCTC 23987 2 more

NCBI tax ID(s) 256839

Special Collections JCM KCTC CIP

Links

Shewanella decolorationis S12 is an obligate aerobe, mesophilic, Gram-negative prokaryote of the family Shewanellaceae.

Gram-negative motile rod-shaped obligate aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 129189

IAM 15094,JCM 21555,NBRC 103170,CIP 108688

@ref 20215

Last LPSN update 2025-12-16 10:02:07

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Shewanellaceae

Genus Shewanella

Species Shewanella decolorationis

Full scientific name Shewanella decolorationis Xu et al. 2005

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
33262	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
33262	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
33262	CIP Medium 72			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
33262	positive	growth	25	mesophilic
33262	positive	growth	25-37	mesophilic
33262	negative	growth	5
33262	negative	growth	10
33262	negative	growth	41
67770	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

33262

Oxygen toleranceobligate aerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
33262	NaCl	positive	growth	0-4 %
33262	NaCl		growth	6 %
33262	NaCl		growth	8 %
33262	NaCl		growth	10 %

Observation

67770

Observationquinones: MK-7, Q-8, Q-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
33262	16947 ChEBI	citrate	-	carbon source
33262	4853 ChEBI	esculin	-	hydrolysis
33262	17632 ChEBI	nitrate	+	reduction
33262	17632 ChEBI	nitrate	-	respiration
33262	16301 ChEBI	nitrite	+	reduction

Antibiotic resistance

@ref	Metabolite	Is antibiotic	Is sensitive	Is resistant
33262	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
33262	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
33262	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
33262	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
33262	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
33262	caseinase	+	3.4.21.50
33262	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
33262	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
33262	gelatinase	+
33262	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
33262	lipase	+
68382	lipase (C 14)	-		from API zym
33262	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
33262	ornithine decarboxylase	+	4.1.1.17
33262	oxidase	+
33262	protease	+
68382	trypsin	+	3.4.21.4	from API zym
33262	tryptophan deaminase	-
33262	tween esterase	+
33262	urease	+	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
33262	-	+	+	+	-	+	+	-	+	+	+	+	-	-	-	+	-	+	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
33262	not determinedn.d.	+	-	-	-	-	-	-	+	-	+	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	-	+	+	+	-	+	-	-	-	+	-	+	+	+	-	-	+	+	-	+	+	+

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
33262		Guangzhou	China	CHN	Asia
67770	Activated sludge of a textile-printing wastewater treatment plant in Guangzhou		China	CHN	Asia
33262	Environment, Sludge of textile-printing waste-water treatment plant	Guangzhou	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AJ609571 (>99% sequence identity) for Shewanella decolorationis from Microbeatlas

Aquatic Samples	83
Soil Samples	8
Animal Samples	185
Plant Samples	1
Total Samples	277

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
33262	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
124043	ASM3016049v1 assembly for Shewanella decolorationis NBRC 103170	scaffold	GCA_030160495	256839.34	256839	70.72

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Shewanella decolorationis partial 16S rRNA gene, type strain CCTCC M 203093T	AJ609571	1448		1353536
124043	Shewanella decolorationis gene for 16S rRNA, partial sequence, strain: NBRC 103170.	AB681977	1468		256839

GC content

@ref	GC-content (mol%)	Method
67770	49.3	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Respiration and growth of Shewanella decolorationis S12 with an Azo compound as the sole electron acceptor.	Hong Y, Xu M, Guo J, Xu Z, Chen X, Sun G.	Appl Environ Microbiol	10.1128/aem.01415-06	2007
Genetics	Whole-Genome Sequencing Redefines Shewanella Taxonomy.	Thorell K, Meier-Kolthoff JP, Sjoling A, Martin-Rodriguez AJ.	Front Microbiol	10.3389/fmicb.2019.01861	2019
	Enhanced removal of chromium(vi) by Fe(iii)-reducing bacterium coated ZVI for wastewater treatment: batch and column experiments.	Zheng B, Ye Y, Hu B, Luo C, Zhu Y.	RSC Adv	10.1039/c9ra06516d	2019
Phylogeny	Shewanella decolorationis sp. nov., a dye-decolorizing bacterium isolated from activated sludge of a waste-water treatment plant.	Xu M, Guo J, Cen Y, Zhong X, Cao W, Sun G	Int J Syst Evol Microbiol	10.1099/ijs.0.63157-0	2005
Phylogeny	Shewanella seohaensis sp. nov., isolated from a tidal flat sediment.	Yoon JH, Park S, Jung YT, Lee JS	Antonie Van Leeuwenhoek	10.1007/s10482-012-9722-2	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#33262	Collection of Institut Pasteur ; Curators of the CIP; CIP 108688
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Shewanella decolorationis (CIP 108688, IAM 15094, CCTCC M 203093)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

API zym

API biotype100

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_030160495

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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