Name: Brumimicrobium glaciale IC156
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134651

Type strain:

Species: Brumimicrobium glaciale

Strain Designation: IC156

Culture col. no.: CIP 107451, LMG 21434, ACAM 645

Strain history: CIP <- 2002, J. Bowman, Tasmania Univ., Tasmania, Australia: strain IC156

NCBI tax ID(s): 200475 (species)

SI-ID 86444

LMG 21434, CIP 107451

Section

Brumimicrobium glaciale IC156 is an obligate aerobe, psychrophilic, Gram-negative bacterium of the family Crocinitomicaceae.

Gram-negative
obligate aerobe
psychrophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Crocinitomicaceae*
	Genus	*Brumimicrobium*
	Species	**Brumimicrobium glaciale**
	Full Scientific Name (LPSN)	Brumimicrobium glaciale Bowman et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #33130]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.996

[Ref.: #33130]	Cell shape	rod-shaped

[Ref.: #33130]	Motility	no

[Ref.: #33130]

Hemolysis ability

[Ref.: #33130]	Pigment production	no
[Ref.: #33130]	Pigment name	Flexirubin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #33130]

Culture medium

Marine agar (MA)

[Ref.: #33130]

Culture medium growth

[Ref.: #33130]

Culture medium composition

expand / minimize

[Ref.: #33130]

Culture medium

CIP Medium 13

[Ref.: #33130]

Culture medium growth

[Ref.: #33130]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #33130]		growth	10 °C
[Ref.: #33130]		growth	5-15 °C
[Ref.: #33130]	no	growth	25 °C
[Ref.: #33130]	no	growth	30 °C
[Ref.: #33130]	no	growth	37 °C
[Ref.: #33130]	no	growth	41 °C
[Ref.: #33130]	no	growth	45 °C

[Ref.: #33130]	Temperature range	psychrophilic
[Ref.: #33130]	Temperature range	mesophilic
[Ref.: #33130]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #33130]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Salt	Tested relation		Salt conc.
[Ref.: #33130]	NaCl		growth	2-8	%
[Ref.: #33130]	NaCl	no	growth	0	%
[Ref.: #33130]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #33130]	citrate ChEBI	-	carbon source
[Ref.: #33130]	esculin ChEBI	-	hydrolysis
[Ref.: #33130]	hippurate ChEBI	+	hydrolysis
[Ref.: #33130]	malonate ChEBI	-	assimilation
[Ref.: #33130]	nitrate ChEBI	-	builds gas from
[Ref.: #33130]	nitrate ChEBI	+	reduction
[Ref.: #33130]	nitrite ChEBI	-	builds gas from
[Ref.: #33130]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #33130]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #33130]		acetoin ChEBI	-
[Ref.: #33130]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #33130]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #33130]	amylase	-
[Ref.: #33130]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #33130]	caseinase	-	3.4.21.50
[Ref.: #33130]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #33130]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #33130]	gelatinase	+/-
[Ref.: #33130]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #33130]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #33130]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #33130]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #33130]	oxidase	+
[Ref.: #33130]	phenylalanine ammonia-lyase	+	4.3.1.24
[Ref.: #33130]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #33130]	tryptophan deaminase	-
[Ref.: #33130]	tween esterase	-
[Ref.: #33130]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #33130]	10361	-	+	+	+	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #33130]	Sample type/isolated from	Environment, Sea ice
[Ref.: #33130]	Country	Antarctica
[Ref.: #33130]	Country ISO 3 Code	ATA
[Ref.: #33130]	Continent	Antarctica
[Ref.: #33130]	Isolation date	1997

[Ref.: #33130]	Country	Antarctica
[Ref.: #33130]	Country ISO 3 Code	ATA
[Ref.: #33130]	Continent	Antarctica
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #33130]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Brumimicrobium glaciale strain IC156	200475.3	wgs	PATRIC	200475 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Brumimicrobium glaciale strain IC156 PATRIC: 200475.3
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Brumimicrobium glaciale strain IC156 PATRIC: 200475.3
[Ref.: #69480]	motile	no	88.556	no
[Ref.: #69480]	gram-positive	no	98.327	no
[Ref.: #69480]	anaerobic	no	97.756	no
[Ref.: #69480]	aerobic	yes	91.868	no
[Ref.: #69480]	halophile	yes	51.792	no
[Ref.: #69480]	spore-forming	no	94.703	no
[Ref.: #69480]	glucose-util	yes	84.971	no
[Ref.: #69480]	flagellated	no	96.325	no
[Ref.: #69480]	thermophile	no	99.607	yes
[Ref.: #69480]	glucose-ferment	no	91.466	no

Availability in culture collections External links

[Ref.: #33130]

Culture collection no.

CIP 107451, LMG 21434, ACAM 645

[Ref.: #92137]

SI-ID 86444

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#33130 Collection of Institut Pasteur ; Curators of the CIP; CIP 107451

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#92137

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID86444.1 )

* These data were automatically processed and therefore are not curated

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Brumimicrobium glaciale strain IC156

Brumimicrobium glaciale strain IC156

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