Brumimicrobium glaciale (CIP 107451, LMG 21434, ACAM 645)

Name: Brumimicrobium glaciale (CIP 107451, LMG 21434, ACAM 645)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134651

Type strain

Strain Designation IC156

Culture col. no. CIP 107451 LMG 21434 ACAM 645 IC156

NCBI tax ID(s) 200475

Special Collections CIP

History CIP <- 2002, J. Bowman, Tasmania Univ., Tasmania, Australia: strain IC156 CIP <- 2002, J. Bowman, Tasmania Univ., Tasmania, Australia: strain IC156

Links

Brumimicrobium glaciale IC156 is an obligate aerobe, Gram-negative, rod-shaped bacterium of the family Crocinitomicaceae.

Gram-negative rod-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 86444

LMG 21434,CIP 107451

@ref 20215

Last LPSN update 2026-05-29 08:38:22

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Crocinitomicaceae

Genus Brumimicrobium

Species Brumimicrobium glaciale

Full scientific name Brumimicrobium glaciale Bowman et al. 2003

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
33130	negative	rod-shaped
125439	negative		95.546
125438			92.5
125438	negative		96.981

Colony morphology

33130

Hemolysis ability1

Pigmentation

@ref	Production	Name
33130		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
33130	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
33130	CIP Medium 13			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
33130	positive	growth	10
33130	positive	growth	5-15
33130	negative	growth	25
33130	negative	growth	30
33130	negative	growth	37
33130	negative	growth	41
33130	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
33130	obligate aerobe
125439	obligate aerobe	98.697

Spore formation

@ref	Spore formation	Confidence
125439		96.366
125438		91.994

Halophily

@ref	Salt	Growth	Tested relation	Concentration
33130	NaCl	positive	growth	2-8 %
33130	NaCl		growth	0 %
33130	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
33130	16947 ChEBI	citrate	-	carbon source
33130	4853 ChEBI	esculin	-	hydrolysis
33130	606565 ChEBI	hippurate	+	hydrolysis
33130	15792 ChEBI	malonate	-	assimilation
33130	17632 ChEBI	nitrate	-	builds gas from
33130	17632 ChEBI	nitrate	+	reduction
33130	16301 ChEBI	nitrite	-	builds gas from
33130	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
33130	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
33130	15688 ChEBI	acetoin	-
33130	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
33130	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
33130	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
33130	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
33130	caseinase	-	3.4.21.50
33130	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
33130	gamma-glutamyltransferase	-	2.3.2.2
33130	gelatinase	+/-
33130	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
33130	lipase	-
68382	lipase (C 14)	-		from API zym
33130	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
33130	ornithine decarboxylase	-	4.1.1.17
33130	oxidase	+
33130	phenylalanine ammonia-lyase	+	4.3.1.24
33130	protease	-
68382	trypsin	-	3.4.21.4	from API zym
33130	tryptophan deaminase	-
33130	tween esterase	-
33130	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
33130	-	+	+	+	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Isolation date
33130		Antarctica	ATA	Antarctica
33130	Environment, Sea ice	Antarctica	ATA	Antarctica	1997

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
33130	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM415293v1 assembly for Brumimicrobium glaciale IC156	contig	GCA_004152935	200475.3	2890416668	200475	76.3

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Brumimicrobium glaciale strain ACAM 645 16S ribosomal RNA gene, partial sequence.	AF521195	1371		200475

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM415293v1 assembly for Brumimicrobium glaciale IC156
BV-BRC: 200475.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.70	no
125439	gram_stain	BacteriaNetⓘ	negative	95.55	no
125439	spore_formation	BacteriaNetⓘ	no	96.37	no
125439	motility	BacteriaNetⓘ	no	79.71	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Brumimicrobium glaciale strain IC156
PATRIC: 200475.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.98	no
125438	anaerobic	anaerobicⓘ	no	97.12	no
125438	spore-forming	spore-formingⓘ	no	91.99	no
125438	aerobic	aerobicⓘ	yes	88.69	yes
125438	thermophilic	thermophileⓘ	no	95.43	yes
125438	flagellated	motile2+ⓘ	no	92.50	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#33130	Collection of Institut Pasteur ; Curators of the CIP; CIP 107451
#68382	Automatically annotated from API zym .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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