Bordetella holmesii (CIP 106630, Hol B1)

Name: Bordetella holmesii (CIP 106630, Hol B1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134581

Type strain

Strain Designation Hol B1

Culture col. no. CIP 106630 Hol B1

NCBI tax ID(s) 35814

Special Collections CIP

History CIP <- 2000, N. Guiso, Inst. Pasteur, Paris, France: strain Hol B1 <- Tenon Hosp., Paris, France

Links

Bordetella holmesii Hol B1 is an obligate aerobe, Gram-negative, rod-shaped bacterium of the family Alcaligenaceae.

Gram-negative rod-shaped obligate aerobe Bacteria

Name and taxonomic classification

SI-ID 67586

CIP 106630

@ref 20215

Last LPSN update 2026-05-29 08:38:21

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Bordetella

Species Bordetella holmesii

Full scientific name Bordetella holmesii Weyant et al. 1995

BacDive ID	Other strains from **Bordetella holmesii** (9)	Type strain
381	B. holmesii 5589, F5101, DSM 13416, ATCC 51541, CCM 4585, ... (type strain)
135543	B. holmesii 149013, G8341, CIP 104396, ATCC 700053
138611	B. holmesii G8350, CIP 104397
139052	B. holmesii 92A 2997, G7702, CIP 104395, ATCC 700052, ...
147591	B. holmesii CCUG 33848, LMG 15047
152732	B. holmesii CCUG 47500
154454	B. holmesii CCUG 53681
155710	B. holmesii CCUG 59107
155745	B. holmesii CCUG 59194

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
32990	negative	rod-shaped

Colony morphology

32990

Hemolysis ability0

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
32990	MEDIUM 21 - for Bordetella		Distilled water make up to (1000.000 ml);Horse blood (250.000 ml);Bordetgengou agar (30.000 g)
32990	CIP Medium 21			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
32990	positive	growth	37
32990	positive	growth	25-37
32990	negative	growth	5
32990	negative	growth	15
32990	negative	growth	41
32990	negative	growth	45

Physiology and metabolism

Oxygen tolerance

32990

Oxygen toleranceobligate aerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32990	NaCl	positive	growth	0-2 %
32990	NaCl		growth	4 %
32990	NaCl		growth	6 %
32990	NaCl		growth	8 %
32990	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32990	16947 ChEBI	citrate	-	carbon source
32990	4853 ChEBI	esculin	-	hydrolysis
32990	17234 ChEBI	glucose	-	degradation
32990	606565 ChEBI	hippurate	-	hydrolysis
32990	15792 ChEBI	malonate	-	assimilation
32990	17632 ChEBI	nitrate	-	reduction
32990	17632 ChEBI	nitrate	-	respiration
32990	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
32990	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
32990	15688 ChEBI	acetoin	-
32990	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
32990	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
32990	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
32990	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
32990	caseinase	-	3.4.21.50
32990	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
32990	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
32990	gamma-glutamyltransferase	-	2.3.2.2
32990	gelatinase	-
32990	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
32990	lipase	-
68382	lipase (C 14)	-		from API zym
32990	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
32990	ornithine decarboxylase	-	4.1.1.17
32990	oxidase	-
32990	phenylalanine ammonia-lyase	-	4.3.1.24
32990	protease	-
68382	trypsin	-	3.4.21.4	from API zym
32990	tryptophan deaminase	-
32990	tween esterase	-
32990	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
32990	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
32990	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
32990			Paris	France	FRA	Europe
32990	Human, Blood	Homo sapiens	Paris	France	FRA	Europe	1996

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
32990	2	Risk group (French classification)

Sequence information

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#32990	Collection of Institut Pasteur ; Curators of the CIP; CIP 106630
#68382	Automatically annotated from API zym .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us