Saccharopolyspora thermophila (DSM 44575, AS 4.1511, IFO 16346)

Name: Saccharopolyspora thermophila (DSM 44575, AS 4.1511, IFO 16346)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13457

Type strain

Strain Designation 216

Culture col. no. DSM 44575 AS 4.1511 IFO 16346 JCM 10664 NBRC 16346 3 more

NCBI tax ID(s) 89367

Special Collections DSMZ JCM KCTC

History DSMZ <- IFO JCM <-- Z. Liu 216.

Links

Saccharopolyspora thermophila 216 is a bacterium that was isolated from grassland soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 50683

DSM 44575,IFO 16346,JCM 10664,AS 4.1511,KCTC 19903,NBRC 16346,CGMCC 4.1511

@ref 20215

Last LPSN update 2026-05-29 08:28:03

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Saccharopolyspora

Species Saccharopolyspora thermophila

Full scientific name Saccharopolyspora thermophila Lu et al. 2001

Synonyms (1)

Saccharopolyspora subtropica

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125439		91.318
125439		98.701	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
11872	CYC-MEDIUM (modified following Cross and Attwell,1973) (DSMZ Medium 550)		Medium recipe at MediaDive	Name: CYC-MEDIUM (modified following Cross and Attwell,1973) (DSMZ Medium 550) Composition: Czapek Dox agar 48.0 g/l Agar 20.0 g/l Casamino acids 6.1 g/l Yeast extract 2.0 g/l Tryptophan 0.02 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
11872	positive	growth	45
67770	positive	growth	50

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.632

Observation

67770

Observationquinones: MK-9(H₆), MK-9(H₁₀)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Grassland
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
11872	grassland soil	Nanning, Guangxi Province	China	CHN	Asia
67770	Grassland soil	Nanning, Guangxi Province, south China	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11872	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3952497v1 assembly for Saccharopolyspora thermophila JCM 10664	scaffold	GCA_039524975	89367	70.55

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
11872	Saccharopolyspora thermophila strain 216 16S ribosomal RNA gene, partial sequence	AF127526	1441		89367
67770	Saccharopolyspora thermophila gene for 16S ribosomal RNA, partial sequence, strain: JCM 10664	LC076550	1478		89367

GC content

@ref	GC-content (mol%)	Method
11872	73.1
67770	67	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3952497v1 assembly for Saccharopolyspora thermophila JCM 10664
NCBI: GCA_039524975

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.63	no
125439	gram_stain	BacteriaNetⓘ	positive	98.70	no
125439	spore_formation	BacteriaNetⓘ	yes	79.83	no
125439	motility	BacteriaNetⓘ	no	91.32	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharopolyspora flava sp. nov. and Saccharopolyspora thermophila sp.nov., novel actinomycetes from soil.	Lu Z, Liu Z, Wang L, Zhang Y, Qi W, Goodfellow M	Int J Syst Evol Microbiol	10.1099/00207713-51-2-319	2001

References

#11872	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44575
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Saccharopolyspora thermophila (DSM 44575, AS 4.1511, IFO 16346)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039524975

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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