Saccharopolyspora erythraea M-5-12559 | Type strain | DSM 40517, AS 4.166, ATCC 11635, CBS 727.72, HUT 6087, IAM 0045, IFO 13426, ISP 5517, JCM 4026, JCM 4748, KCC S-0026, NBRC 13426, NCIB 8594, NRRL 2338, NRRL B-16947, RIA 1387, VKM Ac-1189

Strain identifier

BacDive ID: 13444

Type strain:

Species: Saccharopolyspora erythraea

Strain Designation: M-5-12559

Culture col. no.: DSM 40517, AS 4.166, ATCC 11635, CBS 727.72, HUT 6087, IAM 0045, IFO 13426, ISP 5517, JCM 4026, JCM 4748, KCC S-0026, NBRC 13426, NCIB 8594, NRRL 2338, NRRL B-16947, RIA 1387, VKM Ac-1189

Strain history: <- E.B. Shirling, ISP <- C.E. Higgins, Lilly and Co., M-5-12559

Section

Name and taxonomic classification
Morphology
Culture and growth conditions
Physiology and metabolism
Isolation, sampling and environmental information
Safety information
Sequence information

External links

Saccharopolyspora erythraea M-5-12559 is a mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Actinobacteria
	Class	Actinobacteria
	Order	Pseudonocardiales
	Family	Pseudonocardiaceae
	Genus	Saccharopolyspora
	Species	Saccharopolyspora erythraea
	Full Scientific Name (PNU)	Saccharopolyspora erythraea (Waksman 1923) Labeda 1987

	Synonym	Actinomyces erythreus
	Synonym	Streptomyces erythraeus

Information on morphological and physiological propertiesMorphology

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditionsCulture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #9612]			growth	28 ̊C
[Ref.: #18604]			optimum	30 ̊C

[Ref.: #9612]	Temperature range	mesophilic
[Ref.: #18604]	Temperature range	mesophilic

Information on physiology and metabolismPhysiology and metabolism

[Ref.: #9612]	Name of produced compound	erythromycin complex (A, B, C)
[Ref.: #20216]	Name of produced compound	Erythromycin complex A
[Ref.: #20216]	Name of produced compound	Erythromycin complex B
[Ref.: #20216]	Name of produced compound	Erythromycin complex C

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18604]		NaCl		maximum	2.5	%

	Metabolite	Utilization activity
[Ref.: #18604]	arabinose ChEBI	+
[Ref.: #18604]	cellulose ChEBI	+
[Ref.: #18604]	fructose ChEBI	+
[Ref.: #18604]	glucose ChEBI	+
[Ref.: #18604]	mannitol ChEBI	+
[Ref.: #18604]	myo-inositol ChEBI	+
[Ref.: #18604]	raffinose ChEBI	+
[Ref.: #18604]	rhamnose ChEBI	+
[Ref.: #18604]	sucrose ChEBI	+
[Ref.: #18604]	xylose ChEBI	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18604]	244	not determinedn.d.	+	-	+	-	not determinedn.d.	+	+	+	+	+	+	-	+	-	+	-	+	-	-
[Ref.: #9612]	5101	-	+	-	+/-	-	+/-	-	-	-	-	-	-	-	-	-	+	+	-	-	-

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18604]	159	-	-	-	-	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #9612]	10512	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #9612]	Sample type/isolated from	soil
[Ref.: #9612]	Country	Philippines
[Ref.: #9612]	Country ISO 3 Code	PHL
[Ref.: #9612]	Continent	Asia

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsSafety information

[Ref.: #18604]	Biosafety level	1	German classification
[Ref.: #9612]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassSequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Saccharopolyspora erythraea gene for 16S ribosomal RNA, partial sequence, strain: JCM 4748	D44332	121	ENA	405948 tax ID	*
[Ref.: #20218]	Saccharopolyspora erythraea 16S rRNA (part.)	X53198	1327	ENA	405948 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Saccharopolyspora erythraea NRRL 2338	GCA_000062885	complete	GenBank	405948 tax ID	*
[Ref.: #66792]	Saccharopolyspora erythraea NRRL 2338 DSM 40517	GCA_002564065	contig	GenBank	405948 tax ID	*
[Ref.: #66792]	Saccharopolyspora erythraea NRRL 2338	GCA_000171635	contig	GenBank	405948 tax ID	*
[Ref.: #66792]	Saccharopolyspora erythraea NRRL 2338	405948.11	complete	PATRIC	405948 tax ID	*
[Ref.: #66792]	Saccharopolyspora erythraea NRRL 2338 (Prj:17885)	405948.14	wgs	PATRIC	405948 tax ID	*
[Ref.: #66792]	Saccharopolyspora erythraea NRRL 2338 strain DSM 40517	405948.30	wgs	PATRIC	405948 tax ID	*
[Ref.: #66792]	Saccharopolyspora erythraea DSM 40517	2630968997	permanent	JGI IMG/M	405948 tax ID	*

Availability in culture collectionsExternal links

[Ref.: #9612]

Culture collection no.

DSM 40517, AS 4.166, ATCC 11635, CBS 727.72, HUT 6087, IAM 0045, IFO 13426, ISP 5517, JCM 4026, JCM 4748, KCC S-0026, NBRC 13426, NCIB 8594, NRRL 2338, NRRL B-16947, RIA 1387, VKM Ac-1189

[Ref.: #20218]

Associated Passport(s) in StrainInfo

165685, 333999, 95801, 228899, 95809, 95810, 95811, 95813, 165687, 165688, 285852, 334003, 95815, 178016, 165689, 178018

References

#9612

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40517

#18604

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These References are textmined

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