Sphingobacterium kitahiroshimense (JCM 14970, NCIMB 14398, 10C)

Name: Sphingobacterium kitahiroshimense (JCM 14970, NCIMB 14398, 10C)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134364

Type strain

Strain Designation 10C

Culture col. no. JCM 14970 NCIMB 14398 10C

NCBI tax ID(s) 470446

Special Collections JCM Literature strains

History JCM <-- H. Matsuyama 10C.

Links

Sphingobacterium kitahiroshimense 10C is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil.

Gram-negative rod-shaped aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 393329

JCM 14970,NCIMB 14398

@ref 20215

Last LPSN update 2026-05-29 08:38:18

Domain Bacteria

Phylum Bacteroidota

Class Sphingobacteriia

Order Sphingobacteriales

Family Sphingobacteriaceae

Genus Sphingobacterium

Species Sphingobacterium kitahiroshimense

Full scientific name Sphingobacterium kitahiroshimense Matsuyama et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
32622	negative	0.6-0.8 µm	0.5-0.6 µm	rod-shaped

Pigmentation

32622

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
32622	positive	growth	04-37
32622	positive	optimum	37
67770	positive	growth	25

Culture pH

@ref	Ability	Type	PH
32622	positive	optimum	7
32622	positive	growth	7

Physiology and metabolism

Oxygen tolerance

32622

Oxygen toleranceaerobe

Spore formation

32622

Spore formationno

Observation

32622

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32622	16449 ChEBI	alanine	+	carbon source
32622	17057 ChEBI	cellobiose	+	carbon source
32622	23652 ChEBI	dextrin	+	carbon source
32622	28757 ChEBI	fructose	+	carbon source
32622	28260 ChEBI	galactose	+	carbon source
32622	17234 ChEBI	glucose	+	carbon source
32622	29987 ChEBI	glutamate	+	carbon source
32622	17716 ChEBI	lactose	+	carbon source
32622	17306 ChEBI	maltose	+	carbon source
32622	37684 ChEBI	mannose	+	carbon source
32622	28053 ChEBI	melibiose	+	carbon source
32622	506227 ChEBI	N-acetylglucosamine	+	carbon source
32622	26271 ChEBI	proline	+	carbon source
32622	26546 ChEBI	rhamnose	+	carbon source
32622	17822 ChEBI	serine	+	carbon source
32622	17992 ChEBI	sucrose	+	carbon source
32622	26986 ChEBI	threonine	+	carbon source
32622	27082 ChEBI	trehalose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32622	acid phosphatase	+	3.1.3.2
32622	alkaline phosphatase	+	3.1.3.1
32622	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
32622	soil
67770	Soil from Kitahiroshima City	Hokkaido	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB361248 (>99% sequence identity) for Sphingobacterium from Microbeatlas

Aquatic Samples	2984
Soil Samples	3695
Animal Samples	6840
Plant Samples	2866
Total Samples	16385

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
32622	Sphingobacterium kitahiroshimense gene for 16S rRNA, partial sequence	AB361248	1490		470446

GC content

@ref	GC-content (mol%)	Method
32622	36.9
67770	36.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingobacterium kitahiroshimense sp. nov., isolated from soil.	Matsuyama H, Katoh H, Ohkushi T, Satoh A, Kawahara K, Yumoto I	Int J Syst Evol Microbiol	10.1099/ijs.0.65791-0	2008

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28833	IJSEM 1576 2008 ( DOI 10.1099/ijs.0.65791-0 , PubMed 18599698 )
#32622	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28833
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sphingobacterium kitahiroshimense (JCM 14970, NCIMB 14398, 10C)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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