Name: Prosthecobacter fluviatilis HAQ-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134363

Type strain:

Species: Prosthecobacter fluviatilis

Strain Designation: HAQ-1

Culture col. no.: JCM 14805, KACC 12649, KCTC 22182

Strain history: <- M Taketa, Yokohama National Univ., Japan

NCBI tax ID(s): 445931 (species)

Section

Prosthecobacter fluviatilis HAQ-1 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from metal-rich aquatic environment.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Verrucomicrobiota*
	Class	*Verrucomicrobiia*
	Order	*Verrucomicrobiales*
	Family	*Verrucomicrobiaceae*
	Genus	*Prosthecobacter*
	Species	**Prosthecobacter fluviatilis**
	Full Scientific Name (LPSN)	Prosthecobacter fluviatilis Takeda et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32619]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #32619]	Cell length	1.8-8 µm

[Ref.: #32619]	Cell width	0.3-0.7 µm

[Ref.: #32619]	Cell shape	rod-shaped

[Ref.: #32619]	Motility	no

[Ref.: #32619]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #32619]	growth	10-38 °C
[Ref.: #32619]	optimum	30 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #32619]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32619]			optimum	6.5-7
[Ref.: #32619]			growth	6.5-7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32619]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #32619]

Ability of spore formation

[Ref.: #32619]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-6
[Ref.: #67771]	Observation	quinones: MK-6(H2)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32619]	cellobiose ChEBI	+	carbon source
[Ref.: #32619]	galactose ChEBI	+	carbon source
[Ref.: #32619]	glucose ChEBI	+	carbon source
[Ref.: #32619]	maltose ChEBI	+	carbon source
[Ref.: #32619]	mannose ChEBI	+	carbon source
[Ref.: #32619]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32619]	ribose ChEBI	+	carbon source
[Ref.: #32619]	sucrose ChEBI	+	carbon source
[Ref.: #32619]	xylose ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32619]	Sample type/isolated from	metal-rich aquatic environment

[Ref.: #67770]	Sample type/isolated from	River water
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From river water
[Ref.: #67771]	Geographic location (country and/or sea, region)	Yamada river, Fukuoka
[Ref.: #67771]	Country	Japan
[Ref.: #67771]	Country ISO 3 Code	JPN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB305640 (>99% sequence identity) for Prosthecobacter fluviatilis from Microbeatlas

Aquatic Samples	18
Soil Samples	3
Animal Samples	3
Plant Samples	4
Total Samples	28

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32619]	Prosthecobacter fluviatilis gene for 16S ribosomal RNA, partial sequence	AB305640	1472	GenBank	445931 tax ID

[Ref.: #32619]	GC-content	62.9 mol%
[Ref.: #67771]	GC-content	62.9 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #32619]

Culture collection no.

JCM 14805, KACC 12649, KCTC 22182

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Prosthecobacter algae sp. nov., isolated from activated sludge using algal metabolites.	Lee J, Park B, Woo SG, Lee J, Park J	Int J Syst Evol Microbiol	10.1099/ijs.0.052787-0	2013	*
Phylogeny	Prosthecobacter fluviatilis sp. nov., which lacks the bacterial tubulin btubA and btubB genes.	Takeda M, Yoneya A, Miyazaki Y, Kondo K, Makita H, Kondoh M, Suzuki I, Koizumi J	Int J Syst Evol Microbiol	10.1099/ijs.0.65787-0	2008	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32619

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28831 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#28831

IJSEM 1561 2008 ( DOI 10.1099/ijs.0.65787-0 , PubMed 18599695 )

* These data were automatically processed and therefore are not curated

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