Nitratireductor basaltis (KCTC 22119, JCM 14935, J3)

Name: Nitratireductor basaltis (KCTC 22119, JCM 14935, J3)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134362

Type strain

Strain Designation J3

Culture col. no. KCTC 22119 JCM 14935 J3

NCBI tax ID(s) 1231186 472175

Special Collections JCM KCTC Literature strains

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Nitratireductor basaltis J3 is an aerobe, Gram-negative, rod-shaped prokaryote that was isolated from marine sediment.

Gram-negative rod-shaped aerobe 16S sequence

Name and taxonomic classification

SI-ID 286065

KCTC 22119,JCM 14935

@ref 20215

Last LPSN update 2025-12-16 10:02:02

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Phyllobacteriaceae

Genus Nitratireductor

Species Nitratireductor basaltis

Full scientific name Nitratireductor basaltis Kim et al. 2009

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
32617	negative	1.3 µm	0.65 µm	rod-shaped
67771	negative

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
32617	positive	growth	15-45
32617	positive	optimum	30	mesophilic
67770	positive	growth	30	mesophilic
67771	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
32617	positive	optimum	7.75
32617	positive	growth	5.5-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

67771

Oxygen toleranceaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32617	NaCl	positive	growth	0-8 %
32617	NaCl	positive	optimum	4 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32617	16808 ChEBI	2-dehydro-D-gluconate	+	carbon source
32617	22599 ChEBI	arabinose	+	carbon source
32617	17057 ChEBI	cellobiose	+	carbon source
32617	33984 ChEBI	fucose	+	carbon source
32617	24265 ChEBI	gluconate	+	carbon source
32617	17754 ChEBI	glycerol	+	carbon source
32617	17306 ChEBI	maltose	+	carbon source
32617	29864 ChEBI	mannitol	+	carbon source
32617	28053 ChEBI	melibiose	+	carbon source
32617	506227 ChEBI	N-acetylglucosamine	+	carbon source
32617	33942 ChEBI	ribose	+	carbon source
32617	30911 ChEBI	sorbitol	+	carbon source
32617	17992 ChEBI	sucrose	+	carbon source
32617	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32617	alpha-galactosidase	+	3.2.1.22
32617	catalase	+	1.11.1.6
32617	cytochrome oxidase	+	1.9.3.1

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	denitrification	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	cardiolipin biosynthesis	100	7 of 7
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	Entner Doudoroff pathway	100	10 of 10
66794	adipate degradation	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	valine metabolism	100	9 of 9
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	methylglyoxal degradation	100	5 of 5
66794	suberin monomers biosynthesis	100	2 of 2
66794	kanosamine biosynthesis II	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	ppGpp biosynthesis	100	4 of 4
66794	pentose phosphate pathway	90.91	10 of 11
66794	threonine metabolism	90	9 of 10
66794	serine metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	allantoin degradation	88.89	8 of 9
66794	ketogluconate metabolism	87.5	7 of 8
66794	photosynthesis	85.71	12 of 14
66794	phenylalanine metabolism	84.62	11 of 13
66794	leucine metabolism	84.62	11 of 13
66794	proline metabolism	81.82	9 of 11
66794	myo-inositol biosynthesis	80	8 of 10
66794	propionate fermentation	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	purine metabolism	78.72	74 of 94
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	citric acid cycle	78.57	11 of 14
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	degradation of sugar acids	76	19 of 25
66794	pyrimidine metabolism	75.56	34 of 45
66794	acetate fermentation	75	3 of 4
66794	degradation of pentoses	75	21 of 28
66794	glycogen biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	vitamin B6 metabolism	72.73	8 of 11
66794	d-xylose degradation	72.73	8 of 11
66794	NAD metabolism	72.22	13 of 18
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	glutathione metabolism	71.43	10 of 14
66794	heme metabolism	71.43	10 of 14
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	lipid metabolism	70.97	22 of 31
66794	degradation of sugar alcohols	68.75	11 of 16
66794	octane oxidation	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	cyanate degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	non-pathway related	65.79	25 of 38
66794	oxidative phosphorylation	64.84	59 of 91
66794	tyrosine metabolism	64.29	9 of 14
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	alanine metabolism	62.07	18 of 29
66794	methionine metabolism	61.54	16 of 26
66794	degradation of hexoses	61.11	11 of 18
66794	lipoate biosynthesis	60	3 of 5
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	lysine metabolism	59.52	25 of 42
66794	histidine metabolism	58.62	17 of 29
66794	arginine metabolism	58.33	14 of 24
66794	tryptophan metabolism	57.89	22 of 38
66794	nitrate assimilation	55.56	5 of 9
66794	cysteine metabolism	55.56	10 of 18
66794	metabolism of disaccharids	54.55	6 of 11
66794	urea cycle	53.85	7 of 13
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	ribulose monophosphate pathway	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	biotin biosynthesis	50	2 of 4
66794	glycine metabolism	50	5 of 10
66794	quinate degradation	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	cyclohexanol degradation	50	2 of 4
66794	butanoate fermentation	50	2 of 4
66794	lactate fermentation	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	3-phenylpropionate degradation	46.67	7 of 15
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	propanol degradation	42.86	3 of 7
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	creatinine degradation	40	2 of 5
66794	glycine betaine biosynthesis	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	polyamine pathway	39.13	9 of 23
66794	sulfate reduction	38.46	5 of 13
66794	carnitine metabolism	37.5	3 of 8
66794	carotenoid biosynthesis	36.36	8 of 22
66794	cholesterol biosynthesis	36.36	4 of 11
66794	ascorbate metabolism	36.36	8 of 22
66794	phenol degradation	35	7 of 20
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	arachidonic acid metabolism	33.33	6 of 18
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	starch degradation	30	3 of 10
66794	bile acid biosynthesis, neutral pathway	29.41	5 of 17
66794	alginate biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	vitamin B12 metabolism	20.59	7 of 34

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
32617	marine sediment
67770	Black sand collected from Soesoggak beach	Jeju Island	Republic of Korea	KOR	Asia
67771	From black sand	Soesoggak beach, Jeju Island	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU143347 (>99% sequence identity) for Mesorhizobium from Microbeatlas

Aquatic Samples	667
Soil Samples	65
Animal Samples	43
Plant Samples	22
Total Samples	797

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
32617	Nitratireductor basaltis strain J3 16S ribosomal RNA gene, partial sequence	EU143347	1342		1231186

GC content

@ref	GC-content (mol%)	Method
32617	56.7
67770	55.4-58	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nitratireductor basaltis sp. nov., isolated from black beach sand.	Kim KH, Roh SW, Chang HW, Nam YD, Yoon JH, Jeon CO, Oh HM, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.65784-0	2009
Phylogeny	Nitratireductor alexandrii sp. nov., from phycosphere microbiota of toxic marine dinoflagellate Alexandrium tamarense.	Jiang Z, Duan Y, Yang X, Yao B, Zeng T, Wang X, Feng Q, Qi M, Yang Q, Zhang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.004302	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28829	IJSEM 135 2009 ( DOI 10.1099/ijs.0.65784-0 , PubMed 19126737 )
#32617	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28829
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nitratireductor basaltis (KCTC 22119, JCM 14935, J3)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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