Halomonas desiderata (CGMCC 1.6443, LMG 23896, DQD2-30)

Name: Halomonas desiderata (CGMCC 1.6443, LMG 23896, DQD2-30)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134359

Type strain

Strain Designation DQD2-30

Culture col. no. CGMCC 1.6443 LMG 23896 DQD2-30

NCBI tax ID(s) 52021

Special Collections Literature strains

Links

Halomonas desiderata DQD2-30 is an aerobe, Gram-negative, motile prokaryote that was isolated from soil.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 293008

LMG 23896,CGMCC 1.6443

@ref 20215

Last LPSN update 2026-02-09 11:32:10

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Halomonadaceae

Genus Halomonas

Species Halomonas desiderata

Full scientific name Halomonas desiderata Berendes et al. 1997

Synonyms (2)

Halomonas daqingensis
Billgrantia desiderata

BacDive ID	Other strains from **Halomonas desiderata** (1)	Type strain
6028	H. desiderata FB 2, FB2, DSM 9502, CIP 105505 (type strain)

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
32595	negative	1-1.2 µm	0.7-0.8 µm	rod-shaped
125439	negative				98.7
125438	negative				99.469

Pigmentation

32595

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
32595	positive	growth	10-50
32595	positive	optimum	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
32595	positive	optimum	9
32595	positive	growth	08-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

32595

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
32595
125439		99.5

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32595	NaCl	positive	growth	01-15 %
32595	NaCl	positive	optimum	05-10 %

Observation

32595

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32595	23652 ChEBI	dextrin	+	carbon source
32595	28260 ChEBI	galactose	+	carbon source
32595	24265 ChEBI	gluconate	+	carbon source
32595	17234 ChEBI	glucose	+	carbon source
32595	25115 ChEBI	malate	+	carbon source
32595	15792 ChEBI	malonate	+	carbon source
32595	17306 ChEBI	maltose	+	carbon source
32595	29864 ChEBI	mannitol	+	carbon source
32595	37684 ChEBI	mannose	+	carbon source
32595	17632 ChEBI	nitrate	+	reduction
32595	30911 ChEBI	sorbitol	+	carbon source
32595	30031 ChEBI	succinate	+	carbon source
32595	17992 ChEBI	sucrose	+	carbon source
32595	27082 ChEBI	trehalose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
32595	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
32595	35581 ChEBI	indole	+

Enzymes

@ref	Value	Activity	Ec
32595	catalase	+	1.11.1.6
32595	cytochrome oxidase	+	1.9.3.1
32595	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

32595

Sample typesoil

Taxonmaps

69479

Global distribution of 16S sequence EF121854 (>99% sequence identity) for Halomonas from Microbeatlas

Aquatic Samples	32
Soil Samples	25
Animal Samples	46
Plant Samples	4
Total Samples	107

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2617270887 annotated assembly for Billgrantia desiderata CGMCC 1.6443	scaffold	GCA_900108215	419596.3	2617270887	52021	67.38

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
32595	Halomonas daqingensis strain DQD2-30 16S ribosomal RNA gene, partial sequence	EF121854	1420		419596

GC content

32595

GC-content (mol%)67

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Halomonas desiderata CGMCC 1.6443
NCBI: GCA_900108215

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.50	no
125439	motility	BacteriaNetⓘ	yes	89.10	no
125439	gram_stain	BacteriaNetⓘ	negative	98.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	56.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Halomonas daqingensis CGMCC 1.6443
NCBI: GCA_900108215.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.47	yes
125438	anaerobic	anaerobicⓘ	no	95.40	yes
125438	aerobic	aerobicⓘ	yes	82.42	no
125438	spore-forming	spore-formingⓘ	no	85.81	yes
125438	thermophilic	thermophileⓘ	no	97.50	yes
125438	flagellated	motile2+ⓘ	yes	82.79	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas bachuensis sp. nov., Isolated from Gobi Soil.	Xiao Z, Shen J, Wang Z, Dong F, Zhao JY	Curr Microbiol	10.1007/s00284-020-02268-w	2020
Phylogeny	Halomonas lactosivorans sp. nov., isolated from salt-lake sediment.	Ming H, Ji WL, Li M, Zhao ZL, Cheng LJ, Niu MM, Zhang LY, Wang Y, Nie GX	Int J Syst Evol Microbiol	10.1099/ijsem.0.004209	2020
Phylogeny	Halomonas saliphila sp. nov., a moderately halophilic bacterium isolated from a saline soil.	Gan L, Long X, Zhang H, Hou Y, Tian J, Zhang Y, Tian Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002644	2018
Phylogeny	Halomonas daqingensis sp. nov., a moderately halophilic bacterium isolated from an oilfield soil.	Wu G, Wu XQ, Wang YN, Chi CQ, Tang YQ, Kida K, Wu XL, Luan ZK	Int J Syst Evol Microbiol	10.1099/ijs.0.65746-0	2008
Phylogeny	Halomonas alkalisoli sp. nov., a novel haloalkalophilic species from saline-alkaline soil, and reclassification of Halomonas daqingensis Wu et al. 2008 as a later heterotypic synonym of Halomonas desiderata Berendes et al. 1996.	Shang J, Xu L, Yang R, Zhao Y, Tang SK, Sun JQ	Syst Appl Microbiol	10.1016/j.syapm.2022.126351	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28808	IJSEM 2859 2008 ( DOI 10.1099/ijs.0.65746-0 , PubMed 19060072 )
#32595	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28808
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halomonas desiderata (CGMCC 1.6443, LMG 23896, DQD2-30)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900108215

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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