Name: Gluconobacter japonicus BCC 14458
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134355

Type strain:

Species: Gluconobacter japonicus

Culture col. no.: BCC 14458, NBRC 3271

NCBI tax ID(s): 1307947 (strain), 376620 (species)

SI-ID 2866

LMG 1373, IFO 3271, NBRC 3271, BCRC 17085, CCRC 17085, BCC 14458

Section

Gluconobacter japonicus BCC 14458 is a mesophilic, Gram-negative, motile bacterium of the family Acetobacteraceae.

Gram-negative
motile
rod-shaped
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Gluconobacter*
	Species	**Gluconobacter japonicus**
	Full Scientific Name (LPSN)	Gluconobacter japonicus Malimas et al. 2009

	Synonym	Gluconobacter japonicus subsp. nephelii
	Synonym	Gluconobacter nephelii

Information on morphological and physiological properties Morphology

[Ref.: #32591]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.995

[Ref.: #32591]	Cell length	1.0-2.0 µm

[Ref.: #32591]	Cell width	0.8-1 µm

[Ref.: #32591]	Cell shape	rod-shaped

[Ref.: #32591]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #32591]			growth	25-35 °C
[Ref.: #32591]			optimum	25 °C

[Ref.: #32591]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #32591]			optimum	5.5
[Ref.: #32591]			growth	3.0-5.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.98

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32591]	2-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #32591]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #32591]	arabinose ChEBI	+	carbon source
[Ref.: #32591]	ethanol ChEBI	+	carbon source
[Ref.: #32591]	fructose ChEBI	+	carbon source
[Ref.: #32591]	galactose ChEBI	+	carbon source
[Ref.: #32591]	glucose ChEBI	+	carbon source
[Ref.: #32591]	glycerol ChEBI	+	carbon source
[Ref.: #32591]	mannitol ChEBI	+	carbon source
[Ref.: #32591]	mannose ChEBI	+	carbon source
[Ref.: #32591]	melibiose ChEBI	+	carbon source
[Ref.: #32591]	raffinose ChEBI	+	carbon source
[Ref.: #32591]	rhamnose ChEBI	+	carbon source
[Ref.: #32591]	sorbitol ChEBI	+	carbon source
[Ref.: #32591]	sucrose ChEBI	+	carbon source
[Ref.: #32591]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence AB253435 (>99% sequence identity) for Gluconobacter from Microbeatlas

Aquatic Samples	376
Soil Samples	546
Animal Samples	2369
Plant Samples	531
Total Samples	3822

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32591]	Gluconobacter japonicus gene for 16S rRNA, partial sequence, strain: NBRC 3271	AB253435	1406	GenBank	376620 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Gluconobacter japonicus NBRC 3271	GCA_002723975	contig	GenBank	376620 tax ID	*
[Ref.: #66792]	Gluconobacter japonicus strain NBRC 3271	376620.10		PATRIC	376620 tax ID	*

[Ref.: #32591]

GC-content

55.1-56.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Gluconobacter japonicus NBRC 3271 NCBI: GCA_002723975.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gluconobacter japonicus NBRC 3271 NCBI: GCA_002723975.1
[Ref.: #69480]	flagellated	no	74.547	no
[Ref.: #69480]	gram-positive	no	95.955	yes
[Ref.: #69480]	anaerobic	no	99.224	no
[Ref.: #69480]	halophile	no	89.339	no
[Ref.: #69480]	spore-forming	no	94.548	no
[Ref.: #69480]	glucose-util	yes	90.202	yes
[Ref.: #69480]	aerobic	yes	87.355	no
[Ref.: #69480]	motile	yes	76.97	no
[Ref.: #69480]	glucose-ferment	no	88.07	no
[Ref.: #69480]	thermophile	no	96.293	no

Availability in culture collections External links

[Ref.: #32591]

Culture collection no.

BCC 14458, NBRC 3271

[Ref.: #91909]

SI-ID 2866

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Characterization of 3 phylogenetically distinct membrane-bound d-gluconate dehydrogenases of Gluconobacter spp. and their biotechnological application for efficient 2-keto-d-gluconate production.	Kataoka N, Saichana N, Matsutani M, Toyama H, Matsushita K, Yakushi T	Biosci Biotechnol Biochem	10.1093/bbb/zbac024	2022	*
Metabolism	Efficient Production of 2,5-Diketo-d-Gluconate via Heterologous Expression of 2-Ketogluconate Dehydrogenase in Gluconobacter japonicus.	Kataoka N, Matsutani M, Yakushi T, Matsushita K	Appl Environ Microbiol	10.1128/AEM.04176-14	2015	*
Phylogeny	Gluconobacter japonicus sp. nov., an acetic acid bacterium in the Alphaproteobacteria.	Malimas T, Yukphan P, Takahashi M, Muramatsu Y, Kaneyasu M, Potacharoen W, Tanasupawat S, Nakagawa Y, Tanticharoen M, Yamada Y	Int J Syst Evol Microbiol	10.1099/ijs.0.65740-0	2009	*
Metabolism	Development of efficient 5-ketogluconate production system by Gluconobacter japonicus.	Kataoka N, Naoki K, Ano Y, Matsushita K, Yakushi T	Appl Microbiol Biotechnol	10.1007/s00253-022-12242-0	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32591

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28804 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91909

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID2866.1 )

#28804

IJSEM 466 2009 ( DOI 10.1099/ijs.0.65740-0 , PubMed 19244423 )

* These data were automatically processed and therefore are not curated

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Gluconobacter japonicus NBRC 3271

Gluconobacter japonicus NBRC 3271

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