Pseudotamlana agarivorans (KCTC 22176, CCUG 55327, JW-26)

Name: Pseudotamlana agarivorans (KCTC 22176, CCUG 55327, JW-26)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134350

Type strain

Strain Designation JW-26

Culture col. no. KCTC 22176 CCUG 55327 JW-26

NCBI tax ID(s) 481183

Special Collections CCUG KCTC Literature strains

Links

Pseudotamlana agarivorans JW-26 is an aerobe, Gram-negative, rod-shaped prokaryote that was isolated from seawater.

Gram-negative rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 410160

KCTC 22176,CCUG 55327

@ref 20215

Last LPSN update 2025-12-16 10:02:02

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Pseudotamlana

Species Pseudotamlana agarivorans

Full scientific name Pseudotamlana agarivorans (Yoon et al. 2008) Huang et al. 2025

Synonyms (1)

Tamlana agarivorans

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
32567	negative	01-03 µm	0.6-1 µm	rod-shaped
67771				rod-shaped
67771	negative
125439	negative
125438
125438	negative

Colony morphology

60529

Incubation period1 day

Pigmentation

32567

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
32567	positive	growth	10-38
32567	positive	optimum	30
60529	positive	growth	30
67771	positive	growth	30

Culture pH

@ref	Ability	Type	PH
32567	positive	optimum	07-08
32567	positive	growth	05-08

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
32567	aerobe
60529	aerobe
67771	aerobe
125439	obligate aerobe

Spore formation

@ref	Spore formation
32567
125439
125438

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32567	NaCl	positive	growth	0.5-6 %
32567	NaCl	positive	optimum	2 %

Observation

@ref	Observation
32567	aggregates in chains
67771	quinones: MK-6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type
32567	seawater
60529	Seawater
67771	From tideland

Taxonmaps

69479

Global distribution of 16S sequence EU221275 (>99% sequence identity) for Tamlana from Microbeatlas

Aquatic Samples	260
Soil Samples	17
Animal Samples	63
Plant Samples	1
Total Samples	341

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM164283v1 assembly for Pseudotamlana agarivorans JW-26	contig	GCA_001642835	481183.3	2744054878	481183	68.62

Genome browser: GCA_001642835

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
32567	Tamlana agarivorans strain JW-26 16S ribosomal RNA gene, partial sequence	EU221275	1474		481183

GC content

67771

GC-content (mol%)36.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Tamlana agarivorans JW-26
NCBI: GCA_001642835

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.30	no
125439	motility	BacteriaNetⓘ	no	62.80	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	92.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Tamlana agarivorans strain JW-26
PATRIC: 481183.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.33	no
125438	anaerobic	anaerobicⓘ	no	96.33	yes
125438	spore-forming	spore-formingⓘ	no	93.80	yes
125438	aerobic	aerobicⓘ	yes	77.47	yes
125438	thermophilic	thermophileⓘ	no	97.48	yes
125438	flagellated	motile2+ⓘ	no	90.67	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tamlana haliotis sp. nov., isolated from the gut of the abalone Haliotis rubra.	Cao WR, Liu BT, Sun XK, Sun YY, Jiang MY, Du ZJ	Arch Microbiol	10.1007/s00203-021-02216-7	2021
Phylogeny	Tamlana carrageenivorans sp. nov., a carrageenan-degrading bacterium isolated from seawater.	Jung J, Bae SS, Chung D, Baek K	Int J Syst Evol Microbiol	10.1099/ijsem.0.003318	2019
Phylogeny	Tamlana agarivorans sp. nov., isolated from seawater off Jeju Island in Korea.	Yoon JH, Kang SJ, Lee MH, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.65704-0	2008

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#32567	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28782 (see below)
#60529	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55327
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudotamlana agarivorans (KCTC 22176, CCUG 55327, JW-26)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_001642835

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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