Saccharomonospora saliphila (DSM 45087, CCTCC AB 207003, KCTC 19234)

Name: Saccharomonospora saliphila (DSM 45087, CCTCC AB 207003, KCTC 19234)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13435

Type strain

Culture col. no. DSM 45087 CCTCC AB 207003 KCTC 19234 YIM 90502 JCM 15627

NCBI tax ID(s) 882085 369829

Special Collections DSMZ JCM KCTC Wink compendium Literature strains

History <- S.-K. Tang; YIM 90502 KCTC 19234 <-- W.-J. Li YIM 90502. <- SK Tang, Yunnan Inst. Microbiol., China

Links

Saccharomonospora saliphila DSM 45087 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from saline alkaline soil.

spore-forming Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 129303

KCTC 19234,JCM 15627

@ref 20215

Last LPSN update 2026-02-09 11:21:08

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Saccharomonospora

Species Saccharomonospora saliphila

Full scientific name Saccharomonospora saliphila Dastager et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Confidence
32409	positive
67771	positive
125438	positive	91.198
125439	positive	96.8

Pigmentation

32409

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
19914	positive	optimum	37
32409	positive	growth	28-40
32409	positive	optimum	28
67770	positive	growth	28
67771	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67771	aerobe
125438	aerobe	90.272
125439	obligate aerobe	98.1

Spore formation

32409

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32409	NaCl	positive	optimum	10 %

Observation

67770

Observationquinones: MK-9(H₄), MK-8(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32409	17057 ChEBI	cellobiose	+	carbon source
32409	28757 ChEBI	fructose	+	carbon source
32409	28260 ChEBI	galactose	+	carbon source
32409	17234 ChEBI	glucose	+	carbon source
32409	17306 ChEBI	maltose	+	carbon source
32409	16634 ChEBI	raffinose	+	carbon source
32409	30911 ChEBI	sorbitol	+	carbon source
32409	17992 ChEBI	sucrose	+	carbon source
32409	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
32409	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	+	3.2.1.31	from API zym
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	+		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68382	trypsin	+	3.4.21.4	from API zym
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
19914	not determinedn.d.	+	+	+	+	+	+	+	+	-	+	+	-	+	+	+	+	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Condition	#Alkaline	-
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
12329	saline alkaline soil	Karnataka Province, Gulbarga	India	IND	Asia
67770	Muddy soil	Gulbarga, Karnataka Province	India	IND	Asia
67771	From salina soil		India	IND	Asia

Taxonmaps

69479

Global distribution of 16S sequence DQ367416 (>99% sequence identity) for Saccharomonospora saliphila subclade from Microbeatlas

Aquatic Samples	182
Soil Samples	445
Animal Samples	1896
Plant Samples	150
Total Samples	2673

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
12329	1	Risk group (German classification) According to TRBA 466
19914	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID
67770	ASM38379v1 assembly for Saccharomonospora saliphila YIM 90502	scaffold	GCA_000383795	882085.3	2517093016	882085

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
12329	Saccharomonospora saliphila YIM 90502 16S ribosomal RNA gene, partial sequence	DQ367416	1529		882085

GC content

@ref	GC-content (mol%)	Method
12329	71.8
67770	71.8	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Saccharomonospora saliphila YIM 90502
NCBI: GCA_000383795

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	53.90	no
125439	motility	BacteriaNetⓘ	no	73.00	no
125439	gram_stain	BacteriaNetⓘ	positive	96.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Saccharomonospora saliphila YIM 90502
PATRIC: 882085.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.20	no
125438	anaerobic	anaerobicⓘ	no	96.27	yes
125438	aerobic	aerobicⓘ	yes	90.27	no
125438	spore-forming	spore-formingⓘ	yes	81.66	yes
125438	thermophilic	thermophileⓘ	no	89.09	yes
125438	flagellated	motile2+ⓘ	no	88.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Comparative genomics reveals new evolutionary and ecological patterns of selenium utilization in bacteria.	Peng T, Lin J, Xu YZ, Zhang Y.	ISME J	10.1038/ismej.2015.246	2016
Phylogeny	Saccharomonospora saliphila sp. nov., a halophilic actinomycete from an Indian soil.	Syed DG, Tang SK, Cai M, Zhi XY, Agasar D, Lee JC, Kim CJ, Jiang CL, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.65449-0	2008

References

#12329	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45087
#19914	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28633	IJSEM 570 2008 ( DOI 10.1099/ijs.0.65449-0 , PubMed 18319456 )
#32409	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28633
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Saccharomonospora saliphila (DSM 45087, CCTCC AB 207003, KCTC 19234)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000383795

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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