Croceitalea dokdonensis (KCCM 42308, JCM 13826, DOKDO 023)

Name: Croceitalea dokdonensis (KCCM 42308, JCM 13826, DOKDO 023)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134349

Type strain

Culture col. no. KCCM 42308 JCM 13826 DOKDO 023

NCBI tax ID(s) 1300341 346188

Special Collections JCM Literature strains

Links

Croceitalea dokdonensis KCCM 42308 is an aerobe, Gram-negative, rod-shaped prokaryote that was isolated from rhizosphere of brown alga.

Gram-negative rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 393412

JCM 13826

@ref 20215

Last LPSN update 2025-12-16 10:02:02

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Croceitalea

Species Croceitalea dokdonensis

Full scientific name Croceitalea dokdonensis Lee et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
32564	negative	1.4-3.1 µm	0.4-0.6 µm	rod-shaped

Pigmentation

32564

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
32564	positive	growth	12-38
32564	positive	optimum	35
67770	positive	growth	35

Culture pH

@ref	Ability	Type	PH
32564	positive	optimum	8.5-9
32564	positive	growth	07-10

Physiology and metabolism

Oxygen tolerance

32564

Oxygen toleranceaerobe

Spore formation

32564

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32564	NaCl	positive	growth	0.8-5.4 %
32564	NaCl	positive	optimum	3.1 %

Observation

@ref	Observation
32564	aggregates in chains
67770	quinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32564	30089 ChEBI	acetate	+	carbon source
32564	16449 ChEBI	alanine	+	carbon source
32564	17057 ChEBI	cellobiose	+	carbon source
32564	23652 ChEBI	dextrin	+	carbon source
32564	28757 ChEBI	fructose	+	carbon source
32564	17234 ChEBI	glucose	+	carbon source
32564	17716 ChEBI	lactose	+	carbon source
32564	17306 ChEBI	maltose	+	carbon source
32564	37684 ChEBI	mannose	+	carbon source
32564	28053 ChEBI	melibiose	+	carbon source
32564	26271 ChEBI	proline	+	carbon source
32564	16634 ChEBI	raffinose	+	carbon source
32564	26986 ChEBI	threonine	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32564	catalase	+	1.11.1.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Algae	#Brown Algae
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type
32564	rhizosphere of brown alga
67770	Rhizosphere of the marine alga Ecklonia kurome

Taxonmaps

69479

Global distribution of 16S sequence DQ191182 (>99% sequence identity) for Croceitalea dokdonensis subclade from Microbeatlas

Aquatic Samples	511
Soil Samples	117
Animal Samples	155
Plant Samples	10
Total Samples	793

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM130641v1 assembly for Croceitalea dokdonensis DOKDO 023	contig	GCA_001306415	1300341.6	2645727520	1300341	76.34

Genome browser: GCA_001306415

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
32564	Croceitalea dokdonensis strain DOKDO 023 16S ribosomal RNA gene, partial sequence	DQ191182	1467		346188

GC content

@ref	GC-content (mol%)
32564	66.5
67770	66.5

Genome-based predictions

Literature

Title	Authors	Journal	DOI	Year
Genes for laminarin degradation are dispersed in the genomes of particle-associated Maribacter species.	Kalenborn S, Zuhlke D, Reintjes G, Riedel K, Amann RI, Harder J.	Front Microbiol	10.3389/fmicb.2024.1393588	2024
Genome-Based Taxonomic Classification of Bacteroidetes.	Hahnke RL, Meier-Kolthoff JP, Garcia-Lopez M, Mukherjee S, Huntemann M, Ivanova NN, Woyke T, Kyrpides NC, Klenk HP, Goker M.	Front Microbiol	10.3389/fmicb.2016.02003	2016
Genome sequence of the marine flavobacterium Croceitalea dokdonensis DOKDO 023 that contains proton- and sodium-pumping rhodopsins.	Kwon SK, Lee HG, Kwak MJ, Kim JF	Mar Genomics	10.1016/j.margen.2015.11.011	2015
Description of Croceitalea gen. nov. in the family Flavobacteriaceae with two species, Croceitalea eckloniae sp. nov. and Croceitalea dokdonensis sp. nov., isolated from the rhizosphere of the marine alga Ecklonia kurome.	Lee HS, Kwon KK, Yang SH, Bae SS, Park CH, Kim SJ, Lee JH	Int J Syst Evol Microbiol	10.1099/ijs.0.65697-0	2008

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#32564	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28780 (see below)
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Croceitalea dokdonensis (KCCM 42308, JCM 13826, DOKDO 023)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_001306415

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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