Saccharomonospora iraqiensis subsp. paurometabolica (DSM 44619, CCRC 16315, CCTCC AA 001018)

Name: Saccharomonospora iraqiensis subsp. paurometabolica (DSM 44619, CCRC 16315, CCTCC AA 001018)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13434

Type strain

Culture col. no. DSM 44619 CCRC 16315 CCTCC AA 001018 YIM 90007 KCTC 9971 3 more

NCBI tax ID(s) 882084 208085

Special Collections DSMZ JCM KCTC Wink compendium CIP

History DSMZ <- W.-J. Li, YIM JCM <-- DSM 44619 <-- W.-J. Li YIM 90007. CIP <- 2003, W.J. Li, Yunnan Univ., Kunming, China: strain YIM 90007 <- DSMZ <- CCTCC <- CCRC

Links

Saccharomonospora iraqiensis subsp. paurometabolica DSM 44619 is an obligate aerobe, Gram-positive, filament-shaped bacterium that was isolated from soil in hypersaline habitat.

Gram-positive filament-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 107674

KCTC 9971,CCRC 16315,DSM 44619,BCRC 16315,JCM 13241,CIP 107982

@ref 20215

Last LPSN update 2026-05-29 08:28:02

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Saccharomonospora

Species Saccharomonospora iraqiensis subsp. paurometabolica

Full scientific name Saccharomonospora iraqiensis subsp. paurometabolica (Li et al. 2003) Nouioui et al. 2018

Synonyms (1)

Saccharomonospora paurometabolica

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
121641	positive	filament-shaped
125438	positive		94.225
125439			93.606
125439	positive		98.528

Colony morphology

121641

Hemolysis ability1

Multicellular morphology

@ref	Forms multicellular complex	Medium name
19684		ISP 2
19684		ISP 3
19684		ISP 4
19684		ISP 5
19684		ISP 6
19684		ISP 7

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
11932	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65; with strain-specific modifications) Composition: NaCl 100.0 g/l Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
33867	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
121641	CIP Medium 116	Medium recipe at CIP
121641	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
11932	positive	growth	28
19684	positive	optimum	28
33867	positive	growth	30
67770	positive	growth	37
121641	positive	growth	10-37
121641	negative	growth	41
121641	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
121641	obligate aerobe
125438	aerobe	92.213
125439	obligate aerobe	97.005

Halophily

@ref	Salt	Growth	Tested relation	Concentration
121641	NaCl	positive	growth	0-6 %
121641	NaCl		growth	8 %
121641	NaCl		growth	10 %

Observation

67770

Observationquinones: MK-9(H₄), MK-9(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
121641	16947 ChEBI	citrate	-	carbon source
121641	4853 ChEBI	esculin	+	hydrolysis
121641	606565 ChEBI	hippurate	-	hydrolysis
121641	17632 ChEBI	nitrate	+	reduction
121641	17632 ChEBI	nitrate	-	respiration
121641	16301 ChEBI	nitrite	-	reduction

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
121641	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
121641	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
121641	15688 ChEBI	acetoin	-
121641	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
121641	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
121641	amylase	+
68382	beta-galactosidase	-	3.2.1.23	from API zym
121641	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
121641	caseinase	+	3.4.21.50
121641	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
121641	DNase	+
68382	esterase lipase (C 8)	+		from API zym
121641	gamma-glutamyltransferase	+	2.3.2.2
121641	gelatinase	+/-
121641	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
121641	lipase	+
121641	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
121641	ornithine decarboxylase	-	4.1.1.17
121641	oxidase	-
121641	phenylalanine ammonia-lyase	-	4.3.1.24
121641	protease	+
68382	trypsin	-	3.4.21.4	from API zym
121641	tryptophan deaminase	-
121641	tween esterase	+
121641	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
19684	not determinedn.d.	+	-	+	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-
121641	-	+	+	+	+	+	-	-	-	+	+	+	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
121641	not determinedn.d.	+	+	+	+	+	-	-	-	-	+	+	+	-	-	-	+	+	-	+	+	+	+	-	+	-	-	+	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	+	+	-	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	+	+	-	-	-	+	-	+	-	+	+	+	+	-	+	+	-	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
11932	soil in hypersaline habitat	Xinjiang province	China	CHN	Asia
67770	Soil	Xinjang Province	China	CHN	Asia
121641	Environment, Soil, hypersaline	Xinjiang	China	CHN	Asia	2000

Taxonmaps

69479

Global distribution of 16S sequence AF540959 (>99% sequence identity) for Saccharomonospora from Microbeatlas

Aquatic Samples	6
Soil Samples	15
Animal Samples	32
Plant Samples	1
Total Samples	54

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11932	1	Risk group (German classification) According to TRBA 466
19684	1	Risk group (German classification) According to TRBA 466
121641	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM23103v3 assembly for Saccharomonospora iraqiensis subsp. paurometabolica YIM 90007	scaffold	GCA_000231035	882084.3	2510461000	882084	0

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
11932	Saccharomonospora asparaginophila 16S ribosomal RNA gene, partial sequence	AF540959	1474		882084

GC content

@ref	GC-content (mol%)	Method
11932	71
67770	71	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM23103v3 assembly for Saccharomonospora iraqiensis subsp. paurometabolica YIM 90007
NCBI: GCA_000231035

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.01	no
125439	gram_stain	BacteriaNetⓘ	positive	98.53	no
125439	motility	BacteriaNetⓘ	no	93.61	no
125439	spore_formation	BacteriaNetⓘ	yes	72.94	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Saccharomonospora paurometabolica YIM 90007
PATRIC: 882084.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	94.23	no
125438	anaerobic	anaerobicⓘ	no	97.15	yes
125438	aerobic	aerobicⓘ	yes	92.21	yes
125438	spore-forming	spore-formingⓘ	yes	74.49	no
125438	thermophilic	thermophileⓘ	no	87.46	yes
125438	flagellated	motile2+ⓘ	no	89.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
	Taxogenomic and Comparative Genomic Analysis of the Genus Saccharomonospora Focused on the Identification of Biosynthetic Clusters PKS and NRPS.	Ramirez-Duran N, de la Haba RR, Vera-Gargallo B, Sanchez-Porro C, Alonso-Carmona S, Sandoval-Trujillo H, Ventosa A.	Front Microbiol	10.3389/fmicb.2021.603791	2021
Phylogeny	Saccharomonospora saliphila sp. nov., a halophilic actinomycete from an Indian soil.	Syed DG, Tang SK, Cai M, Zhi XY, Agasar D, Lee JC, Kim CJ, Jiang CL, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.65449-0	2008
Phylogeny	Saccharomonospora paurometabolica sp. nov., a moderately halophilic actinomycete isolated from soil in China.	Li WJ, Tang SK, Stackebrandt E, Kroppenstedt RM, Schumann P, Xu LH, Jiang CL	Int J Syst Evol Microbiol	10.1099/ijs.0.02633-0	2003

References

#11932	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44619
#19684	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#33867	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121641	Collection of Institut Pasteur ; Curators of the CIP; CIP 107982
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Saccharomonospora iraqiensis subsp. paurometabolica (DSM 44619, CCRC 16315, CCTCC AA 001018)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000231035

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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