Luteolibacter algae (KCTC 22040, A5J-41-2, MBIC 08320)

Name: Luteolibacter algae (KCTC 22040, A5J-41-2, MBIC 08320)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134330

Type strain

Strain Designation A5J-41-2

Culture col. no. KCTC 22040 A5J-41-2 MBIC 08320

NCBI tax ID(s) 454151

Special Collections KCTC Literature strains

History KCTC <- JW Yoon, Tokyo Univ. <- K Adachi, MBI

Links

Luteolibacter algae A5J-41-2 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Red alga.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 27419

KCTC 22040,NBRC 103931

@ref 20215

Last LPSN update 2026-05-29 08:38:18

Domain Bacteria

Phylum Verrucomicrobiota

Class Verrucomicrobiia

Order Verrucomicrobiales

Family Verrucomicrobiaceae

Genus Luteolibacter

Species Luteolibacter algae

Full scientific name Luteolibacter algae Yoon et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
32455	negative	1.25 µm	0.6 µm	rod-shaped
67771				rod-shaped
67771	negative

Pigmentation

32455

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
32455	positive	growth	04-37
32455	positive	optimum	25
67771	positive	growth	20-30

Culture pH

@ref	Ability	Type	PH	PH range
32455	positive	growth	6.5-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67771	aerobe
125439	facultative anaerobe	90.579

Spore formation

@ref	Spore formation	Confidence
32455
125439		98.213

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32455	NaCl	positive	growth	<3 %

Observation

67771

Observationquinones: MK-9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32455	62064 ChEBI	2,3-butanediol	+	carbon source
32455	22599 ChEBI	arabinose	+	carbon source
32455	17057 ChEBI	cellobiose	+	carbon source
32455	23652 ChEBI	dextrin	+	carbon source
32455	15740 ChEBI	formate	+	carbon source
32455	28757 ChEBI	fructose	+	carbon source
32455	28260 ChEBI	galactose	+	carbon source
32455	24175 ChEBI	galacturonate	+	carbon source
32455	17234 ChEBI	glucose	+	carbon source
32455	17716 ChEBI	lactose	+	carbon source
32455	37684 ChEBI	mannose	+	carbon source
32455	28053 ChEBI	melibiose	+	carbon source
32455	53426 ChEBI	tween 80	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32455	alkaline phosphatase	+	3.1.3.1
32455	catalase	+	1.11.1.6
32455	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Algae	#Red algae

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
32455	Red alga
67771	From unidentified red alga, Estuary of Taira River	Nagasaki	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB331893 (>99% sequence identity) for Luteolibacter algae subclade from Microbeatlas

Aquatic Samples	1934
Soil Samples	300
Animal Samples	144
Plant Samples	20
Total Samples	2398

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4268304v1 assembly for Luteolibacter algae KCTC 22040	scaffold	GCA_042683045	454151	67.26

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
32455	Luteolibacter algae gene for 16S rRNA, partial sequence, strain: A5J-41-2	AB331893	1481		454151

GC content

32455

GC-content (mol%)55.9

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4268304v1 assembly for Luteolibacter algae KCTC 22040
NCBI: GCA_042683045

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	90.58	no
125439	motility	BacteriaNetⓘ	no	71.12	no
125439	gram_stain	BacteriaNetⓘ	negative	80.50	no
125439	spore_formation	BacteriaNetⓘ	no	98.21	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Luteolibacter yonseiensis sp. nov., isolated from activated sludge using algal metabolites.	Park J, Baek GS, Woo SG, Lee J, Yang J, Lee J	Int J Syst Evol Microbiol	10.1099/ijs.0.046664-0	2012
Phylogeny	Luteolibacter luojiensis sp. nov., isolated from Arctic tundra soil, and emended description of the genus Luteolibacter.	Jiang F, Li W, Xiao M, Dai J, Kan W, Chen L, Li W, Fang C, Peng F	Int J Syst Evol Microbiol	10.1099/ijs.0.037309-0	2011
Phylogeny	Description of Persicirhabdus sediminis gen. nov., sp. nov., Roseibacillus ishigakijimensis gen. nov., sp. nov., Roseibacillus ponti sp. nov., Roseibacillus persicicus sp. nov., Luteolibacter pohnpeiensis gen. nov., sp. nov. and Luteolibacter algae sp. nov., six marine members of the phylum 'Verrucomicrobia', and emended descriptions of the class Verrucomicrobiae, the order Verrucomicrobiales and the family Verrucomicrobiaceae.	Yoon J, Matsuo Y, Adachi K, Nozawa M, Matsuda S, Kasai H, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.65520-0	2008

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28677	IJSEM 998 2008 ( DOI 10.1099/ijs.0.65520-0 , PubMed 18398209 )
#32455	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28677
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Luteolibacter algae (KCTC 22040, A5J-41-2, MBIC 08320)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_042683045

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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