Name: Sneathiella glossodoripedis IAM 15419
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134304

Type strain:

Species: Sneathiella glossodoripedis

Culture col. no.: IAM 15419, KCTC 12842, MKT 133, JCM 23214

Strain history: IAM 15419 <-- M. Kurahashi MKT133.

NCBI tax ID(s): 1236958 (strain), 418853 (species)

SI-ID 343466

IAM 15419, KCTC 12842, JCM 23214

Section

Sneathiella glossodoripedis IAM 15419 is an aerobe, Gram-negative, motile bacterium that was isolated from Foot epidermis of a nudibranch.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sneathiellales*
	Family	*Sneathiellaceae*
	Genus	*Sneathiella*
	Species	**Sneathiella glossodoripedis**
	Full Scientific Name (LPSN)	Sneathiella glossodoripedis Kurahashi et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32331]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.99

[Ref.: #32331]	Cell length	0.85 µm

[Ref.: #32331]	Cell width	0.25 µm

[Ref.: #32331]	Cell shape	rod-shaped

[Ref.: #32331]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %92.825

[Ref.: #32331]

Pigment production

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #32331]	growth	30-40 °C
[Ref.: #32331]	optimum	40 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #32331]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32331]

Oxygen tolerance

aerobe

[Ref.: #32331]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32331]		nitrate ChEBI	+	reduction

	Enzyme	Enzyme activity	EC number
[Ref.: #32331]	acid phosphatase	+	3.1.3.2
[Ref.: #32331]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32331]	catalase	+	1.11.1.6
[Ref.: #32331]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32331]	Sample type/isolated from	Foot epidermis of a nudibranch

[Ref.: #67770]	Sample type/isolated from	Foot epidermis of a nudibranch (Glossodoris cincta) in the sea off Aka Island
[Ref.: #67770]	Host species	Glossodoris cincta
[Ref.: #67770]	Geographic location (country and/or sea, region)	Okinawa
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Invertebrates (Other)	#Mollusca
#Host Body-Site	#Limb	#Foot
#Host Body-Site	#Organ	#Skin, Nail, Hair

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB289439 (>99% sequence identity) for Sneathiella glossodoripedis subclade from Microbeatlas

Aquatic Samples	3163
Soil Samples	490
Animal Samples	812
Plant Samples	89
Total Samples	4554

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32331]	Sneathiella glossodoripedis gene for 16S rRNA, partial sequence	AB289439	1426	GenBank	418853 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sneathiella glossodoripedis JCM 23214	GCA_000616095	contig	GenBank	1236958 tax ID
[Ref.: #66792]	Sneathiella glossodoripedis JCM 23214	1236958.3	wgs	PATRIC	1236958 tax ID	*
[Ref.: #66792]	Sneathiella glossodoripedis JCM 23214	2585427915	draft	JGI IMG/M	1236958 tax ID	*

[Ref.: #32331]	GC-content	56.9 mol%
[Ref.: #67770]	GC-content	56.9 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sneathiella glossodoripedis JCM 23214 PATRIC: 1236958.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sneathiella glossodoripedis JCM 23214 PATRIC: 1236958.3
[Ref.: #69480]	motile	yes	90.583	yes
[Ref.: #69480]	gram-positive	no	98.679	yes
[Ref.: #69480]	anaerobic	no	98.918	yes
[Ref.: #69480]	aerobic	yes	92.044	yes
[Ref.: #69480]	halophile	yes	81.555	no
[Ref.: #69480]	spore-forming	no	93.961	yes
[Ref.: #69480]	glucose-util	yes	76.324	no
[Ref.: #69480]	flagellated	yes	63.255	no
[Ref.: #69480]	thermophile	no	91.866	no
[Ref.: #69480]	glucose-ferment	no	92.044	no

Availability in culture collections External links

[Ref.: #32331]

Culture collection no.

IAM 15419, KCTC 12842, MKT 133, JCM 23214

[Ref.: #91884]

SI-ID 343466

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sneathiella sedimenti sp. nov., isolated from marine sediment.	Lee Y, Weerawongwiwat V, Kim JH, Yoon JH, Suh MK, Kim HS, Lee JS, Sukhoom A, Kim W	Int J Syst Evol Microbiol	10.1099/ijsem.0.005218	2022	*
Phylogeny	Sneathiella aquimaris sp. nov., isolated from aquaculture seawater.	Li G, Lai Q, Yan P, Gu L, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.004239	2020	*
Phylogeny	Sneathiella limimaris sp. nov., a marine alphaproteobacterium isolated from a tidal mudflat and emended description of the genus Sneathiella.	Lee SD	Int J Syst Evol Microbiol	10.1099/ijsem.0.003411	2019	*
Phylogeny	Sneathiella chungangensis sp. nov., isolated from a marine sand, and emended description of the genus Sneathiella.	Siamphan C, Kim H, Lee JS, Kim W	Int J Syst Evol Microbiol	10.1099/ijs.0.059386-0	2014	*
Phylogeny	Sneathiella glossodoripedis sp. nov., a marine alphaproteobacterium isolated from the nudibranch Glossodoris cincta, and proposal of Sneathiellales ord. nov. and Sneathiellaceae fam. nov.	Kurahashi M, Fukunaga Y, Harayama S, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.65328-0	2008	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32331

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28565 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91884

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID343466.1 )

#28565

IJSEM 548 2008 ( DOI 10.1099/ijs.0.65328-0 , PubMed 18319453 )

* These data were automatically processed and therefore are not curated

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