Name: Methylomicrobium japanense NI
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134303

Type strain:

Species: Methylomicrobium japanense

Strain Designation: NI

Culture col. no.: VKM B-2462, FERM BP-5633, NBRC 103677

NCBI tax ID(s): 81932 (species)

Section

Methylomicrobium japanense NI is an aerobe, Gram-negative, motile bacterium that was isolated from marine sediment.

Gram-negative
motile
rod-shaped
aerobe
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Methylococcales*
	Family	*Methylococcaceae*
	Genus	*Methylomicrobium*
	Species	**Methylomicrobium japanense**
	Full Scientific Name (LPSN)	Methylomicrobium japanense Kalyuzhnaya et al. 2008

Synonym

"Methylotuvimicrobium japanense"

Information on morphological and physiological properties Morphology

[Ref.: #32326]	Gram stain	negative

[Ref.: #32326]	Cell length	2.3 µm

[Ref.: #32326]	Cell width	1.05 µm

[Ref.: #32326]	Cell shape	rod-shaped

[Ref.: #32326]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #32326]			growth	15-37 °C

	pH	Kind of pH		pH
[Ref.: #32326]			optimum	8.1

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32326]

Oxygen tolerance

aerobe

[Ref.: #32326]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32326]		NaCl		growth	0.174-8.7	%
[Ref.: #32326]		NaCl		optimum	3.48	%

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32326]	Sample type/isolated from	marine sediment
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

[Ref.: #32326]

GC-content

49.9 mol%

Availability in culture collections External links

[Ref.: #32326]

Culture collection no.

VKM B-2462, FERM BP-5633, NBRC 103677

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Classification of halo(alkali)philic and halo(alkali)tolerant methanotrophs provisionally assigned to the genera Methylomicrobium and Methylobacter and emended description of the genus Methylomicrobium.	Kalyuzhnaya MG, Khmelenina V, Eshinimaev B, Sorokin D, Fuse H, Lidstrom M, Trotsenko Y	Int J Syst Evol Microbiol	10.1099/ijs.0.65317-0	2008	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32326

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28560 (see below)

#28560

IJSEM 591 2008 ( DOI 10.1099/ijs.0.65317-0 , PubMed 18319461 )

* These data were automatically processed and therefore are not curated

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