Name: Olivibacter terrae KCTC 12644
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134297

Type strain:

Species: Olivibacter terrae

Culture col. no.: KCTC 12644, LMG 23494, Jip 13

Strain history: <- ST Lee, KAIST

NCBI tax ID(s): 398046 (species)

SI-ID 290305

LMG 23494, KCTC 12644

Section

Olivibacter terrae KCTC 12644 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Compost.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Olivibacter*
	Species	**Olivibacter terrae**
	Full Scientific Name (LPSN)	Olivibacter terrae Wang et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32314]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #32314]	Cell length	1.1 µm

[Ref.: #32314]	Cell width	0.7 µm

[Ref.: #32314]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #32314]	Motility	no

[Ref.: #32314]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #32314]	growth	15-30 °C
[Ref.: #32314]	optimum	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #32314]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32314]			optimum	7
[Ref.: #32314]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32314]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #32314]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32314]		NaCl		growth	0-4	%

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32314]	arabinose ChEBI	+	carbon source
[Ref.: #32314]	esculin ChEBI	+	hydrolysis
[Ref.: #32314]	gluconate ChEBI	+	carbon source
[Ref.: #32314]	glycogen ChEBI	+	carbon source
[Ref.: #32314]	mannose ChEBI	+	carbon source
[Ref.: #32314]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32314]	rhamnose ChEBI	+	carbon source
[Ref.: #32314]	ribose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #32314]	acid phosphatase	+	3.1.3.2
[Ref.: #32314]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32314]	alpha-galactosidase	+	3.2.1.22
[Ref.: #32314]	gelatinase	+
[Ref.: #32314]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32314]	Sample type/isolated from	Compost

[Ref.: #67771]	Sample type/isolated from	From compost, composed of cow dung and rice straw
[Ref.: #67771]	Geographic location (country and/or sea, region)	Chungwon Province
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered

#Biodegradation

#Composting

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB267714 (>99% sequence identity) for Olivibacter terrae subclade from Microbeatlas

Aquatic Samples	62
Soil Samples	86
Animal Samples	251
Plant Samples	59
Total Samples	458

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32314]	Olivibacter terrae gene for 16S rRNA, partial sequence	AB267714	1482	GenBank	398046 tax ID

[Ref.: #32314]

GC-content

40.6 mol%

Availability in culture collections External links

[Ref.: #32314]

Culture collection no.

KCTC 12644, LMG 23494, Jip 13

[Ref.: #91879]

SI-ID 290305

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Olivibacter jilunii sp. nov., isolated from DDT-contaminated soil.	Chen K, Tang SK, Wang GL, Nie GX, Li QF, Zhang JD, Li WJ, Li SP	Int J Syst Evol Microbiol	10.1099/ijs.0.042416-0	2012	*
Phylogeny	Olivibacter soli sp. nov., Olivibacter ginsengisoli sp. nov. and Olivibacter terrae sp. nov., from soil of a ginseng field and compost in South Korea.	Wang L, Ten LN, Lee HG, Im WT, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.65299-0	2008	*
Phylogeny	Olivibacter composti sp. nov., isolated from compost collected at a greenhouse.	Lin SY, Hameed A, Chiu KY, Liu YC, Hsu YH, Lai WA, Young CC	Int J Syst Evol Microbiol	10.1099/ijsem.0.001593	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32314

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28551 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91879

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID290305.1 )

#28551

IJSEM 1123 2008 ( DOI 10.1099/ijs.0.65299-0 , PubMed 18450700 )

* These data were automatically processed and therefore are not curated

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