Chryseobacterium marinum (KCCM 42689, NBRC 103143, IMCC 3228)

Name: Chryseobacterium marinum (KCCM 42689, NBRC 103143, IMCC 3228)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134294

Type strain

Culture col. no. KCCM 42689 NBRC 103143 IMCC 3228 CIP 110389

NCBI tax ID(s) 442733

Special Collections Literature strains CIP

History CIP <- 2012, NBRC <- T.H. Choi, Inha Univ.: strain IMCC3228

Links

Chryseobacterium marinum KCCM 42689 is an aerobe, Gram-negative, rod-shaped prokaryote that was isolated from marine sediment.

Gram-negative rod-shaped aerobe 16S sequence

Name and taxonomic classification

SI-ID 323269

NBRC 103143

@ref 20215

Last LPSN update 2026-02-09 11:32:09

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Weeksellaceae

Genus Chryseobacterium

Species Chryseobacterium marinum

Full scientific name Chryseobacterium marinum (Lee et al. 2007) Kämpfer et al. 2009

Synonyms (2)

Halpernia marina
Sejongia marina

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
32299	negative	0.9 µm	0.65 µm	rod-shaped
120809	negative			rod-shaped

Pigmentation

32299

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link
120809	CIP Medium 13		Medium recipe at CIP
120809	CIP Medium 72		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
32299	positive	growth	03-25
32299	positive	optimum	15	psychrophilic

Culture pH

@ref	Ability	Type	PH	PH range
32299	positive	optimum	7
32299	positive	growth	06-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

32299

Oxygen toleranceaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32299	NaCl	positive	growth	0-3.5 %
32299	NaCl	positive	optimum	0.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32299	28644 ChEBI	2-oxopentanoate	+	carbon source
32299	16449 ChEBI	alanine	+	carbon source
32299	40585 ChEBI	alpha-cyclodextrin	+	carbon source
32299	22653 ChEBI	asparagine	+	carbon source
32299	35391 ChEBI	aspartate	+	carbon source
32299	23652 ChEBI	dextrin	+	carbon source
32299	4853 ChEBI	esculin	+	hydrolysis
32299	29987 ChEBI	glutamate	+	carbon source
32299	21217 ChEBI	L-alaninamide	+	carbon source
32299	25017 ChEBI	leucine	+	carbon source
32299	17306 ChEBI	maltose	+	carbon source
32299	26271 ChEBI	proline	+	carbon source
32299	17822 ChEBI	serine	+	carbon source
32299	30031 ChEBI	succinate	+	carbon source
32299	26986 ChEBI	threonine	+	carbon source
32299	53423 ChEBI	tween 40	+	carbon source
32299	53426 ChEBI	tween 80	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32299	acid phosphatase	+	3.1.3.2
68382	acid phosphatase	-	3.1.3.2	from API zym
32299	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
32299	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
32299	gelatinase	+
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68382	trypsin	-	3.4.21.4	from API zym
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120809	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
32299	marine sediment
120809	Environment, Seawater	Maxwell bay, King George Island	Antarctica	ATA	Antarctica

Taxonmaps

69479

Global distribution of 16S sequence EF554366 (>99% sequence identity) for Chryseobacterium marinum from Microbeatlas

Aquatic Samples	26
Soil Samples	23
Animal Samples	24
Plant Samples	1
Total Samples	74

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
120809	1	Risk group (French classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
32299	Chryseobacterium marinum strain IMCC3228 16S ribosomal RNA gene, partial sequence	EF554366	1471		442733
124043	Chryseobacterium marinum gene for 16S rRNA, partial sequence, strain: NBRC 103143.	AB681952	1442		442733

GC content

32299

GC-content (mol%)35

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Carotenoids from heterotrophic bacteria isolated from Fildes Peninsula, King George Island, Antarctica.	Vila E, Hornero-Mendez D, Azziz G, Lareo C, Saravia V.	Biotechnol Rep (Amst)	10.1016/j.btre.2019.e00306	2019
Phylogeny	Transfer of Sejongia antarctica, Sejongia jeonii and Sejongia marina to the genus Chryseobacterium as Chryseobacterium antarcticum comb. nov., Chryseobacterium jeonii comb. nov. and Chryseobacterium marinum comb. nov.	Kampfer P, Lodders N, Vaneechoutte M, Wauters G	Int J Syst Evol Microbiol	10.1099/ijs.0.009142-0	2009
Phylogeny	Sejongia marina sp. nov., isolated from Antarctic seawater.	Lee K, Lee HK, Choi TH, Cho JC	Int J Syst Evol Microbiol	10.1099/ijs.0.65279-0	2007

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28538	IJSEM 2917 2007 ( DOI 10.1099/ijs.0.65279-0 , PubMed 18048749 )
#32299	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28538
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120809	Collection of Institut Pasteur ; Curators of the CIP; CIP 110389
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Chryseobacterium marinum (KCCM 42689, NBRC 103143, IMCC 3228)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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