Name: Chryseobacterium marinum KCCM 42689
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134294

Type strain:

Species: Chryseobacterium marinum

Culture col. no.: KCCM 42689, NBRC 103143, IMCC 3228, CIP 110389

Strain history: CIP <- 2012, NBRC <- T.H. Choi, Inha Univ.: strain IMCC3228

NCBI tax ID(s): 442733 (species)

SI-ID 323269

NBRC 103143

Section

Chryseobacterium marinum KCCM 42689 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from marine sediment.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium marinum**
	Full Scientific Name (LPSN)	Chryseobacterium marinum (Lee et al. 2007) Kämpfer et al. 2009

	Synonym	Halpernia marina
	Synonym	Sejongia marina

Information on morphological and physiological properties Morphology

[Ref.: #32299]	Gram stain	negative
[Ref.: #120809]	Gram stain	negative

[Ref.: #32299]	Cell length	0.9 µm

[Ref.: #32299]	Cell width	0.65 µm

[Ref.: #32299]	Cell shape	rod-shaped
[Ref.: #120809]	Cell shape	rod-shaped

[Ref.: #32299]	Motility	no
[Ref.: #120809]	Motility	no

[Ref.: #32299]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #120809]

Culture medium

CIP Medium 13

[Ref.: #120809]

Culture medium growth

[Ref.: #120809]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #120809]

Culture medium

CIP Medium 72

[Ref.: #120809]

Culture medium growth

[Ref.: #120809]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #32299]			growth	03-25 °C
[Ref.: #32299]			optimum	15 °C

[Ref.: #32299]

Temperature range

psychrophilic

	pH	Kind of pH		pH
[Ref.: #32299]			optimum	7
[Ref.: #32299]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32299]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32299]		NaCl		growth	0-3.5	%
[Ref.: #32299]		NaCl		optimum	0.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32299]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #32299]	alanine ChEBI	+	carbon source
[Ref.: #32299]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #32299]	asparagine ChEBI	+	carbon source
[Ref.: #32299]	aspartate ChEBI	+	carbon source
[Ref.: #32299]	dextrin ChEBI	+	carbon source
[Ref.: #32299]	esculin ChEBI	+	hydrolysis
[Ref.: #32299]	glutamate ChEBI	+	carbon source
[Ref.: #32299]	L-alaninamide ChEBI	+	carbon source
[Ref.: #32299]	leucine ChEBI	+	carbon source
[Ref.: #32299]	maltose ChEBI	+	carbon source
[Ref.: #32299]	proline ChEBI	+	carbon source
[Ref.: #32299]	serine ChEBI	+	carbon source
[Ref.: #32299]	succinate ChEBI	+	carbon source
[Ref.: #32299]	threonine ChEBI	+	carbon source
[Ref.: #32299]	tween 40 ChEBI	+	carbon source
[Ref.: #32299]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #32299]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #32299]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #32299]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #32299]	gelatinase	+
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120809]	12567	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32299]	Sample type/isolated from	marine sediment

[Ref.: #120809]	Sample type/isolated from	Environment, Seawater
[Ref.: #120809]	Geographic location (country and/or sea, region)	Maxwell bay, King George Island
[Ref.: #120809]	Country	Antarctica
[Ref.: #120809]	Country ISO 3 Code	ATA
[Ref.: #120809]	Continent	Antarctica
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF554366 (>99% sequence identity) for Chryseobacterium marinum from Microbeatlas

Aquatic Samples	26
Soil Samples	23
Animal Samples	24
Plant Samples	1
Total Samples	74

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #120809]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32299]	Chryseobacterium marinum strain IMCC3228 16S ribosomal RNA gene, partial sequence	EF554366	1471	GenBank	442733 tax ID

[Ref.: #32299]

GC-content

35 mol%

Availability in culture collections External links

[Ref.: #32299]

Culture collection no.

KCCM 42689, NBRC 103143, IMCC 3228, CIP 110389

[Ref.: #91876]

SI-ID 323269

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Transfer of Sejongia antarctica, Sejongia jeonii and Sejongia marina to the genus Chryseobacterium as Chryseobacterium antarcticum comb. nov., Chryseobacterium jeonii comb. nov. and Chryseobacterium marinum comb. nov.	Kampfer P, Lodders N, Vaneechoutte M, Wauters G	Int J Syst Evol Microbiol	10.1099/ijs.0.009142-0	2009	*
Phylogeny	Sejongia marina sp. nov., isolated from Antarctic seawater.	Lee K, Lee HK, Choi TH, Cho JC	Int J Syst Evol Microbiol	10.1099/ijs.0.65279-0	2007	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32299

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28538 (see below)

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91876

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID323269.1 )

#120809 Collection of Institut Pasteur ; Curators of the CIP; CIP 110389

#28538

IJSEM 2917 2007 ( DOI 10.1099/ijs.0.65279-0 , PubMed 18048749 )

* These data were automatically processed and therefore are not curated

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