Name: Marinobacter salicampi ISL-40
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134282

Type strain:

Species: Marinobacter salicampi

Strain Designation: ISL-40

Culture col. no.: KCTC 129725, CCUG 54357, KCTC 12972, CIP 109719

Strain history: CIP <- 2007, CCUG <- J.H. Yoon, KRIBB, Taejon, Korea: strain ISL-40

NCBI tax ID(s): 435907 (species)

SI-ID 309544

CCUG 54357, KCTC 12972, CIP 109719

Special Collections

Section

When using BacDive for research please cite our paper

Marinobacter salicampi ISL-40 is an aerobe, Gram-negative, motile bacterium that was isolated from Marine solar saltern.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Marinobacter*
	Species	**Marinobacter salicampi**
	Full Scientific Name (LPSN)	Marinobacter salicampi Yoon et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32252]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #122373]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %98.5

[Ref.: #32252]	Cell length	4 µm

[Ref.: #32252]	Cell width	0.6 µm

[Ref.: #32252]	Cell shape	rod-shaped
[Ref.: #122373]	Cell shape	rod-shaped

[Ref.: #32252]	Motility	yes
[Ref.: #122373]	Motility	yes

[Ref.: #60148]

Incubation period

7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #33320]

Culture medium

Marine agar (MA)

[Ref.: #33320]

Culture medium growth

[Ref.: #33320]

Culture medium composition

expand / minimize

[Ref.: #122373]

Culture medium

CIP Medium 13

[Ref.: #122373]

Culture medium growth

[Ref.: #122373]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #32252]	growth	04-39 °C
[Ref.: #32252]	optimum	30 °C
[Ref.: #33320]	growth	30 °C
[Ref.: #60148]	growth	30 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #32252]			optimum	7.5
[Ref.: #32252]			growth	5.5-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32252]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Salt		Salt conc.
[Ref.: #32252]	NaCl	growth	0-16	%
[Ref.: #32252]	NaCl	optimum	8	%
[Ref.: #60148]	NaCl	growth	6	%

[Ref.: #32252]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32252]	acetate ChEBI	+	carbon source
[Ref.: #32252]	malate ChEBI	+	carbon source
[Ref.: #32252]	nitrate ChEBI	+	reduction
[Ref.: #122373]	nitrate ChEBI	+	reduction
[Ref.: #122373]	nitrite ChEBI	-	reduction
[Ref.: #32252]	pyruvate ChEBI	+	carbon source
[Ref.: #32252]	succinate ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #122373]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #32252]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #32252]	catalase	+	1.11.1.6
[Ref.: #122373]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #32252]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122373]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #122373]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122373]	12059	-	+	+	+	-	+	+	+	-	-	+	+	-	-	-	-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #60148]	Sample type/isolated from	Marine solar saltern
[Ref.: #60148]	Sampling date	2005
[Ref.: #60148]	Country	Republic of Korea
[Ref.: #60148]	Country ISO 3 Code	KOR
[Ref.: #60148]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From saltern field
[Ref.: #67771]	Geographic location (country and/or sea, region)	the Yellow Sea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #122373]	Sample type/isolated from	Environment, Marine solar saltern
[Ref.: #122373]	Geographic location (country and/or sea, region)	Taejon
[Ref.: #122373]	Country	Republic of Korea
[Ref.: #122373]	Country ISO 3 Code	KOR
[Ref.: #122373]	Continent	Asia
[Ref.: #122373]	Isolation date	2005
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Condition	#Saline	-
#Engineered	#Industrial	#Industrial production
#Environmental	#Terrestrial	#Coast

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF486354 (>99% sequence identity) for Marinobacter salicampi subclade from Microbeatlas

Aquatic Samples	55
Soil Samples	5
Animal Samples	4
Plant Samples
Total Samples	64

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #122373]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32252]	Marinobacter salicampi strain ISL-40 16S ribosomal RNA gene, partial sequence	EF486354	1496	GenBank ENA	435907 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Marinobacter salicampi ISL-40	GCA_011074795	contig	GenBank ENA	435907 tax ID	*

[Ref.: #32252]

GC-content

58.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Marinobacter salicampi ISL-40 NCBI: GCA_011074795.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	98.5	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	97.44	yes
[Ref.: #125438]	aerobic	aerobicⓘ	yes	84.827	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	88.265	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	98.348	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	88.033	no

Availability in culture collections External links

[Ref.: #32252]

Culture collection no.

KCTC 129725, CCUG 54357, KCTC 12972, CIP 109719

[Ref.: #91868]

SI-ID 309544

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinobacter salicampi sp. nov., isolated from a marine solar saltern in Korea.	Yoon JH, Lee MH, Kang SJ, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.65197-0	2007	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32252

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28493 (see below)

#33320 ; Curators of the CIP;
#60148 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54357

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91868

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID309544.1 )

#122373 Collection of Institut Pasteur ; Curators of the CIP; CIP 109719

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#28493

IJSEM 2102 2007 ( DOI 10.1099/ijs.0.65197-0 , PubMed 17766879 )

* These data were automatically processed and therefore are not curated

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