Pedobacter terricola (KCTC 12876, JCM 14594, DS-45T)

Name: Pedobacter terricola (KCTC 12876, JCM 14594, DS-45T)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134271

Type strain

Strain Designation DS-45T, DS-45

Culture col. no. KCTC 12876 JCM 14594 DS-45T DS-45

NCBI tax ID(s) 430684

Special Collections JCM KCTC Literature strains

History J.-H. Yoon DS-45. <- JH Yoon, KRIBB

Links

Pedobacter terricola DS-45T is an aerobe, Gram-negative, coccus-shaped bacterium that was isolated from soil.

Gram-negative coccus-shaped aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 309549

JCM 14594,KCTC 12876

@ref 20215

Last LPSN update 2026-02-09 11:32:09

Domain Bacteria

Phylum Bacteroidota

Class Sphingobacteriia

Order Sphingobacteriales

Family Sphingobacteriaceae

Genus Pedobacter

Species Pedobacter terricola

Full scientific name Pedobacter terricola Yoon et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
32219	negative	2.75 µm	0.45 µm	coccus-shaped
67771				rod-shaped
67771				coccus-shaped
67771	negative

Pigmentation

32219

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
32219	positive	growth	04-35
32219	positive	optimum	25
67770	positive	growth	25
67771	positive	growth	25

Culture pH

@ref	Ability	Type	PH
32219	positive	optimum	7
32219	positive	growth	5.5-8.0

Physiology and metabolism

Oxygen tolerance

67771

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation
32219
67771

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32219	NaCl	positive	growth	<7 %
32219	NaCl	positive	optimum	0.5 %

Observation

@ref	Observation
67770	quinones: MK-7
67771	quinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32219	17057 ChEBI	cellobiose	+	carbon source
32219	4853 ChEBI	esculin	+	hydrolysis
32219	17234 ChEBI	glucose	+	carbon source
32219	28087 ChEBI	glycogen	+	carbon source
32219	17716 ChEBI	lactose	+	carbon source
32219	25017 ChEBI	leucine	+	carbon source
32219	17306 ChEBI	maltose	+	carbon source
32219	37684 ChEBI	mannose	+	carbon source
32219	506227 ChEBI	N-acetylglucosamine	+	carbon source
32219	26546 ChEBI	rhamnose	+	carbon source
32219	27082 ChEBI	trehalose	+	carbon source
32219	53424 ChEBI	tween 20	+	carbon source
32219	53423 ChEBI	tween 40	+	carbon source
32219	53425 ChEBI	tween 60	+	carbon source
32219	53426 ChEBI	tween 80	+	carbon source
32219	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32219	acid phosphatase	+	3.1.3.2
32219	alkaline phosphatase	+	3.1.3.1
32219	catalase	+	1.11.1.6
32219	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
32219	soil
67770	Soil
67771	From soil	Dokdo	Republic of Korea	KOR	Asia

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
32219	Pedobacter terricola strain DS-45 16S ribosomal RNA gene, partial sequence	EF446147	1474		430684

GC content

@ref	GC-content (mol%)	Method
32219	36.8
67770	36.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pelobium manganitolerans gen. nov., sp. nov., isolated from sludge of a manganese mine.	Xia X, Wu S, Han Y, Liao S, Wang G	Int J Syst Evol Microbiol	10.1099/ijsem.0.001451	2016
Phylogeny	Pedobacter rivuli sp. nov., isolated from a freshwater stream.	Kang H, Kim H, Joung Y, Joh K	Int J Syst Evol Microbiol	10.1099/ijs.0.067579-0	2014
Phylogeny	Pedobacter hainanensis sp. nov., isolated from seaside soil.	Meng YY, Fu YB, Wang MY, Zhao Y, Liu QS, Du YG	Curr Microbiol	10.1007/s00284-013-0305-x	2013
Phylogeny	Pedobacter lentus sp. nov. and Pedobacter terricola sp. nov., isolated from soil.	Yoon JH, Kang SJ, Park S, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.65146-0	2007

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28461	IJSEM 2089 2007 ( DOI 10.1099/ijs.0.65146-0 , PubMed 17766877 )
#32219	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28461
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pedobacter terricola (KCTC 12876, JCM 14594, DS-45T)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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