Name: Salimicrobium luteum BY-5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134252

Type strain:

Species: Salimicrobium luteum

Strain Designation: BY-5

Culture col. no.: KCTC 3989, CIP 108918

Strain history: CIP <- 2005, J.H. Yoon, KRIBB, Taejon, Korea: strain BY-5, Yeomjeonicoccus luteus.

NCBI tax ID(s): 351205 (species)

SI-ID 311001

CIP 108918, KCTC 3989

Section

Salimicrobium luteum BY-5 is an aerobe, Gram-positive, coccus-shaped bacterium that was isolated from From sediment, marine solar saltern.

coccus-shaped
Gram-positive
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Salimicrobium*
	Species	**Salimicrobium luteum**
	Full Scientific Name (LPSN)	Salimicrobium luteum Yoon et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32122]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #120702]	Gram stain	positive

[Ref.: #32122]	Cell length	1.55 µm

[Ref.: #32122]	Cell shape	coccus-shaped
[Ref.: #120702]	Cell shape	coccus-shaped

[Ref.: #32122]	Motility	no
[Ref.: #120702]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #32122]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #38364]

Culture medium

Marine agar (MA)

[Ref.: #38364]

Culture medium growth

[Ref.: #38364]

Culture medium composition

expand / minimize

[Ref.: #120702]

Culture medium

CIP Medium 13

[Ref.: #120702]

Culture medium growth

[Ref.: #120702]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #32122]		growth	10-44 °C
[Ref.: #32122]		optimum	37 °C
[Ref.: #38364]		growth	37 °C
[Ref.: #67771]		growth	37 °C
[Ref.: #120702]		growth	22-37 °C
[Ref.: #120702]	no	growth	5 °C
[Ref.: #120702]	no	growth	10 °C
[Ref.: #120702]	no	growth	41 °C
[Ref.: #120702]	no	growth	45 °C

[Ref.: #32122]	Temperature range	mesophilic
[Ref.: #38364]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic
[Ref.: #120702]	Temperature range	psychrophilic
[Ref.: #120702]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #32122]			optimum	7.5-8
[Ref.: #32122]			growth	6.5-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32122]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #32122]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no

	Salt	Tested relation		Salt conc.
[Ref.: #32122]	NaCl		growth	02-27	%
[Ref.: #32122]	NaCl		optimum	10	%
[Ref.: #120702]	NaCl	no	growth	0	%
[Ref.: #120702]	NaCl	no	growth	2	%
[Ref.: #120702]	NaCl	no	growth	4	%
[Ref.: #120702]	NaCl	no	growth	6	%
[Ref.: #120702]	NaCl	no	growth	8	%

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32122]	cellobiose ChEBI	+	carbon source
[Ref.: #120702]	citrate ChEBI	-	carbon source
[Ref.: #120702]	esculin ChEBI	-	hydrolysis
[Ref.: #32122]	fructose ChEBI	+	carbon source
[Ref.: #32122]	galactose ChEBI	+	carbon source
[Ref.: #32122]	glucose ChEBI	+	carbon source
[Ref.: #120702]	hippurate ChEBI	-	hydrolysis
[Ref.: #32122]	maltose ChEBI	+	carbon source
[Ref.: #32122]	mannitol ChEBI	+	carbon source
[Ref.: #32122]	mannose ChEBI	+	carbon source
[Ref.: #120702]	nitrate ChEBI	-	reduction
[Ref.: #120702]	nitrite ChEBI	-	reduction
[Ref.: #32122]	pyruvate ChEBI	+	carbon source
[Ref.: #32122]	ribose ChEBI	+	carbon source
[Ref.: #32122]	sucrose ChEBI	+	carbon source
[Ref.: #32122]	trehalose ChEBI	+	carbon source
[Ref.: #32122]	tween 60 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #120702]		indole ChEBI	no

	Physiological tests	Metabolite	Methylred-test
[Ref.: #120702]		glucose ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #120702]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #32122]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120702]	amylase	-
[Ref.: #120702]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120702]	caseinase	-	3.4.21.50
[Ref.: #32122]	catalase	+	1.11.1.6
[Ref.: #120702]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #32122]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #120702]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #120702]	gelatinase	-
[Ref.: #120702]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #120702]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120702]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120702]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120702]	oxidase	-
[Ref.: #120702]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #120702]	tween esterase	+
[Ref.: #120702]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120702]	11547	-	+	+	+	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67771]	Sample type/isolated from	From sediment, marine solar saltern
[Ref.: #67771]	Geographic location (country and/or sea, region)	Byunsan
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #120702]	Sample type/isolated from	Environment, Marine solar saltern
[Ref.: #120702]	Geographic location (country and/or sea, region)	Byunsan
[Ref.: #120702]	Country	Republic of Korea
[Ref.: #120702]	Country ISO 3 Code	KOR
[Ref.: #120702]	Continent	Asia
[Ref.: #120702]	Isolation date	2004
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence DQ227305 (>99% sequence identity) for Salimicrobium from Microbeatlas

Aquatic Samples	49
Soil Samples	9
Animal Samples	45
Plant Samples	1
Total Samples	104

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #120702]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32122]	Salimicrobium luteum strain BY-5 16S ribosomal RNA gene, partial sequence	DQ227305	1491	GenBank	351205 tax ID

[Ref.: #32122]	GC-content	47.9 mol%
[Ref.: #67771]	GC-content	47.9 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #32122]

Culture collection no.

KCTC 3989, CIP 108918

[Ref.: #91842]

SI-ID 311001

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salimicrobium jeotgali sp. nov., isolated from salted, fermented seafood.	Choi EJ, Jin HM, Kim KH, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.062042-0	2014	*
Phylogeny	Salimicrobium salexigens sp. nov., a moderately halophilic bacterium from salted hides.	de la Haba RR, Yilmaz P, Sanchez-Porro C, Birbir M, Ventosa A	Syst Appl Microbiol	10.1016/j.syapm.2011.04.002	2011	*
Phylogeny	Reclassification of Marinococcus albus Hao et al. 1985 as Salimicrobium album gen. nov., comb. nov. and Bacillus halophilus Ventosa et al. 1990 as Salimicrobium halophilum comb. nov., and description of Salimicrobium luteum sp. nov.	Yoon JH, Kang SJ, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.65003-0	2007	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32122

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28367 (see below)

#38364 ; Curators of the CIP;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91842

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID311001.1 )

#120702 Collection of Institut Pasteur ; Curators of the CIP; CIP 108918

#28367

IJSEM 2406 2007 ( DOI 10.1099/ijs.0.65003-0 , PubMed 17911318 )

* These data were automatically processed and therefore are not curated

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