Salimicrobium luteum (KCTC 3989, CIP 108918, BY-5)

Name: Salimicrobium luteum (KCTC 3989, CIP 108918, BY-5)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134252

Type strain

Strain Designation BY-5

Culture col. no. KCTC 3989 CIP 108918 BY-5

NCBI tax ID(s) 351205

Special Collections KCTC CIP Literature strains

History <- JH Yoon, KRIBB CIP <- 2005, J.H. Yoon, KRIBB, Taejon, Korea: strain BY-5, Yeomjeonicoccus luteus.

Links

Salimicrobium luteum BY-5 is an aerobe, Gram-positive, coccus-shaped bacterium that was isolated from From sediment, marine solar saltern.

Gram-positive coccus-shaped aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 311001

CIP 108918,KCTC 3989

@ref 20215

Last LPSN update 2026-02-09 11:32:09

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Salimicrobium

Species Salimicrobium luteum

Full scientific name Salimicrobium luteum Yoon et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell shape
32122	positive	1.55 µm	coccus-shaped
67771
67771	positive
120702	positive		coccus-shaped

Pigmentation

32122

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
38364	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
120702	CIP Medium 13			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
32122	positive	growth	10-44
32122	positive	optimum	37
38364	positive	growth	37
67771	positive	growth	37
120702	positive	growth	22-37
120702	negative	growth	5
120702	negative	growth	10
120702	negative	growth	41
120702	negative	growth	45

Culture pH

@ref	Ability	Type	PH
32122	positive	optimum	7.5-8
32122	positive	growth	6.5-8

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
32122	aerobe
67771	aerobe

Spore formation

@ref	Spore formation
32122
67771

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32122	NaCl	positive	growth	02-27 %
32122	NaCl	positive	optimum	10 %
120702	NaCl		growth	0 %
120702	NaCl		growth	2 %
120702	NaCl		growth	4 %
120702	NaCl		growth	6 %
120702	NaCl		growth	8 %

Observation

67771

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32122	17057 ChEBI	cellobiose	+	carbon source
120702	16947 ChEBI	citrate	-	carbon source
120702	4853 ChEBI	esculin	-	hydrolysis
32122	28757 ChEBI	fructose	+	carbon source
32122	28260 ChEBI	galactose	+	carbon source
32122	17234 ChEBI	glucose	+	carbon source
120702	606565 ChEBI	hippurate	-	hydrolysis
32122	17306 ChEBI	maltose	+	carbon source
32122	29864 ChEBI	mannitol	+	carbon source
32122	37684 ChEBI	mannose	+	carbon source
120702	17632 ChEBI	nitrate	-	reduction
120702	16301 ChEBI	nitrite	-	reduction
32122	15361 ChEBI	pyruvate	+	carbon source
32122	33942 ChEBI	ribose	+	carbon source
32122	17992 ChEBI	sucrose	+	carbon source
32122	27082 ChEBI	trehalose	+	carbon source
32122	53425 ChEBI	tween 60	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120702	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Methylred-test
120702	17234 ChEBI	glucose	-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
120702	alcohol dehydrogenase	-	1.1.1.1
32122	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
120702	amylase	-
68382	beta-galactosidase	+	3.2.1.23	from API zym
120702	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
120702	caseinase	-	3.4.21.50
32122	catalase	+	1.11.1.6
120702	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
32122	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
120702	gamma-glutamyltransferase	-	2.3.2.2
120702	gelatinase	-
120702	lecithinase	-
68382	leucine arylamidase	-	3.4.11.1	from API zym
120702	lipase	-
68382	lipase (C 14)	-		from API zym
120702	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
120702	ornithine decarboxylase	-	4.1.1.17
120702	oxidase	-
120702	protease	-
68382	trypsin	-	3.4.21.4	from API zym
120702	tween esterase	+
120702	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120702	-	+	+	+	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
67771	From sediment, marine solar saltern	Byunsan	Republic of Korea	KOR	Asia
120702	Environment, Marine solar saltern	Byunsan	Republic of Korea	KOR	Asia	2004

Taxonmaps

69479

Global distribution of 16S sequence DQ227305 (>99% sequence identity) for Salimicrobium from Microbeatlas

Aquatic Samples	49
Soil Samples	9
Animal Samples	45
Plant Samples	1
Total Samples	104

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
120702	1	Risk group (French classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
32122	Salimicrobium luteum strain BY-5 16S ribosomal RNA gene, partial sequence	DQ227305	1491		351205

GC content

@ref	GC-content (mol%)	Method
32122	47.9
67771	47.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salimicrobium jeotgali sp. nov., isolated from salted, fermented seafood.	Choi EJ, Jin HM, Kim KH, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.062042-0	2014
Phylogeny	Salimicrobium salexigens sp. nov., a moderately halophilic bacterium from salted hides.	de la Haba RR, Yilmaz P, Sanchez-Porro C, Birbir M, Ventosa A	Syst Appl Microbiol	10.1016/j.syapm.2011.04.002	2011
Phylogeny	Reclassification of Marinococcus albus Hao et al. 1985 as Salimicrobium album gen. nov., comb. nov. and Bacillus halophilus Ventosa et al. 1990 as Salimicrobium halophilum comb. nov., and description of Salimicrobium luteum sp. nov.	Yoon JH, Kang SJ, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.65003-0	2007

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28367	IJSEM 2406 2007 ( DOI 10.1099/ijs.0.65003-0 , PubMed 17911318 )
#32122	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28367
#38364	; Curators of the CIP;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120702	Collection of Institut Pasteur ; Curators of the CIP; CIP 108918
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Salimicrobium luteum (KCTC 3989, CIP 108918, BY-5)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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