Pelagicoccus litoralis (MBIC 08273, IAM 15423, KCTC 13125)

Name: Pelagicoccus litoralis (MBIC 08273, IAM 15423, KCTC 13125)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134248

Type strain

Strain Designation H-MN57T, H-MN57

Culture col. no. MBIC 08273 IAM 15423 KCTC 13125 H-MN57T NBRC 103622 2 more

NCBI tax ID(s) 415223

Special Collections JCM KCTC Literature strains

History KCTC <- JW Yoon, IAM, Tokyo Univ. <- M Nozawa, MBI

Links

Pelagicoccus litoralis H-MN57T is an aerobe, spore-forming, Gram-negative bacterium that was isolated from seawater.

spore-forming Gram-negative coccus-shaped aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 309486

IAM 15423,KCTC 13125,NBRC 103622,JCM 23204

@ref 20215

Last LPSN update 2026-05-29 08:38:17

Domain Bacteria

Phylum Verrucomicrobiota

Class Opitutia

Order Opitutales

Family Pelagicoccaceae

Genus Pelagicoccus

Species Pelagicoccus litoralis

Full scientific name Pelagicoccus litoralis Yoon et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
32104	negative	1.1 µm	1.1 µm	coccus-shaped
67771				coccus-shaped
67771	negative

Pigmentation

32104

Productionno

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
32104	positive	growth	04-30
32104	positive	optimum	26
67771	positive	growth	25-27

Culture pH

@ref	Ability	Type	PH	PH range
32104	positive	optimum	7.75
32104	positive	growth	6.5-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
32104	aerobe
67771	aerobe

Spore formation

@ref	Spore formation
32104
67771

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32104	NaCl	positive	growth	0-4 %
32104	NaCl	positive	optimum	2 %

Observation

67771

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32104	58143 ChEBI	5-dehydro-D-gluconate	+	carbon source
32104	4853 ChEBI	esculin	+	hydrolysis
32104	28053 ChEBI	melibiose	+	carbon source
32104	17992 ChEBI	sucrose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32104	alkaline phosphatase	+	3.1.3.1
32104	catalase	+	1.11.1.6
32104	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
32104	seawater
67771	From seawater	Kamaishi, Iwate	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB286017 (>99% sequence identity) for Pelagicoccus litoralis from Microbeatlas

Aquatic Samples	158
Soil Samples	4
Animal Samples	0
Plant Samples	0
Total Samples	162

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
32104	Pelagicoccus litoralis gene for 16S rRNA, partial sequence	AB286017	1496		415223

GC content

@ref	GC-content (mol%)
32104	54.1
67771	56.4

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pelagicoccus mobilis gen. nov., sp. nov., Pelagicoccus albus sp. nov. and Pelagicoccus litoralis sp. nov., three novel members of subdivision 4 within the phylum 'Verrucomicrobia', isolated from seawater by in situ cultivation.	Yoon J, Yasumoto-Hirose M, Matsuo Y, Nozawa M, Matsuda S, Kasai H, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.64970-0	2007

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28349	IJSEM 1377 2007 ( DOI 10.1099/ijs.0.64970-0 , PubMed 17625161 )
#32104	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28349
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pelagicoccus litoralis (MBIC 08273, IAM 15423, KCTC 13125)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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